Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00088 ATGGATTGCAAGGAGCTCAATTTAAACGAAGATTGTGGTGGCTGTGGTAGCGGGGGAAAGAATGGGGGAGATGGGTTTATAGACAGGAGCAAAGTGAGGATTTTGCTGTGCGATAACGATTCAAAAAGTTCAGAAGAGGTTTTCAAGCTTCTTTTGAAATGTTCCTACCAGGTCATTTCCGTGAGTTCAGCTAGGCAGGTCATTGATGCTTTGAATGCGGAGGGACCTGAAATTGATATCATACTATCGGAAGTTGACCTGCCAATGGCCAAAGGTATGAAAATGTTGAAGTATATCACTCGGGATAAAGAGCTCCGGCGCATTCCTGTTATCATGATGTCAACACAAGATGAGGTCCCTATTGTTGTTAAGTGCTTGAGGCTTGGAGCAGCTGACTATCTTGTAAAGCCTTTACGGACAAATGAGCTATTAAACTTGTGGACCCACATGTGGAGAAGAAGACGCATGCTTGGACTGGCAGAAAAAAACATTTTGAATTATGAATTTGATATGGTGGCATCAGACCCAAGTGATGCTAATACGAATAGTACTACTTTGTTCTCGGATGACACTGATGACAAATCACGTAGGAGCACAAATCCAGATATGGGAATTGCTGCAACCCATCAGGAAGATGAGGTAGACTGTTTGGGCTTCTTTTCTTTAGGGGGGGAAGAGATGCTGTTAAGGAAAAATAAATATTTTATGTTGACTACAGTTTTGGATAAATGCTGCTCCTTGGAGTGCGACTTAGACATTTGTAAAATATTGCAAGTTATCTTGATTGTTGAGATGTATATGAACTTAATGACGAATTCCCTCAATTTGAGACCTGGTATTGCCACCGCACTTGTAGAGCCTCCTGCTGTTCATACAGTGAAACATCAGCCAGATGTACCTGGAATCAGTGAGCGCCGAACAGGGCAACCTTCATCATGTCCTAGAAAGAGTGAACTAAAGATTGGGGAATCATCCGCATTCTTTACCTATGTCAAATCAAGAACTGTGAAAAATAAGGCAGTAGATGTTGAAGATAATGCTAAACGACTTTTGCTGGATGAAAATCATCAAGAAACTAGTCAGCGTGCAGTTCGCCTTCCCCCAATACAAGAAAATGGGGAGGCCTTGGAAAGCCATTCCCAAGGAGACGAATTCCCAAGCAGTAGTTTTCCTGATTCTTTTTCTGTGGAGAGATCTTGTACACCACCTGCTGGCACAGAAGTTCACAGGGAAAGAAACATCAATGAAGAAAATTGCTCTCAAACCCTCATGCATCCTCGAGATGGATCTCAAGTTGATATGCCAGGCCTACCTGTGCAAACACAAACTGCTTATCCTTTTTATATGCCAGAAGGTATGATGTCGGCGCAACTGTACCAAAAGAACCTGCATGATATGCAAAATCATGCGGCAATGATGTCACAGTATGGACATTTTCATCATTGCCCTCCCAATGTAAGTGGCGTGGCATCTTATCCTTATTACCCTATGAATATATGTTTACAACCTGGTCAAATGCCAGCTACTACTACTCATACTCATTCATGGCCGTCTTTTGGGAATTCATCTTCCAATGAAGCAAAATCGAACAAATTTGATAGAAGAGAGGCAGCACTGATTAAATTTAGGCAGAAAAGGAAAGAGCGCTGTTTTGATAAGAAGATTAGGTATGTTAATAGGAAACGGCTTGCAGAGAGGAGGCCTCGTGTTCGAGGTCAGTTTGTGAGAAAGGTAAATGGTGTCAATGTAGATCTTAATGGACAACCTGCATCTGTTGATGATGTCGAGGATGAAGACGAGGAGGAGGAGCTACTATCAAGGGATTCTTCTCATGAGGATGATGGTTCAGGATATTAG 1857 42.22 MDCKELNLNEDCGGCGSGGKNGGDGFIDRSKVRILLCDNDSKSSEEVFKLLLKCSYQVISVSSARQVIDALNAEGPEIDIILSEVDLPMAKGMKMLKYITRDKELRRIPVIMMSTQDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILNYEFDMVASDPSDANTNSTTLFSDDTDDKSRRSTNPDMGIAATHQEDEVDCLGFFSLGGEEMLLRKNKYFMLTTVLDKCCSLECDLDICKILQVILIVEMYMNLMTNSLNLRPGIATALVEPPAVHTVKHQPDVPGISERRTGQPSSCPRKSELKIGESSAFFTYVKSRTVKNKAVDVEDNAKRLLLDENHQETSQRAVRLPPIQENGEALESHSQGDEFPSSSFPDSFSVERSCTPPAGTEVHRERNINEENCSQTLMHPRDGSQVDMPGLPVQTQTAYPFYMPEGMMSAQLYQKNLHDMQNHAAMMSQYGHFHHCPPNVSGVASYPYYPMNICLQPGQMPATTTHTHSWPSFGNSSSNEAKSNKFDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGVNVDLNGQPASVDDVEDEDEEEELLSRDSSHEDDGSGY 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 735922 743882 + Lsi02G000880.1 Lsi02g00088 654830

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00088 618 MobiDBLite consensus disorder prediction 591 607 - -
Lsi02g00088 618 MobiDBLite consensus disorder prediction 511 530 - -
Lsi02g00088 618 ProSiteProfiles Response regulatory domain profile. 33 151 IPR001789 GO:0000160
Lsi02g00088 618 Pfam CCT motif 535 577 IPR010402 GO:0005515
Lsi02g00088 618 ProSiteProfiles CCT domain profile. 535 577 IPR010402 GO:0005515
Lsi02g00088 618 MobiDBLite consensus disorder prediction 177 204 - -
Lsi02g00088 618 MobiDBLite consensus disorder prediction 583 618 - -
Lsi02g00088 618 SUPERFAMILY CheY-like 30 158 IPR011006 -
Lsi02g00088 618 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 589 IPR045279 GO:0009736
Lsi02g00088 618 Gene3D - 32 240 - -
Lsi02g00088 618 MobiDBLite consensus disorder prediction 381 400 - -
Lsi02g00088 618 MobiDBLite consensus disorder prediction 294 317 - -
Lsi02g00088 618 Pfam Response regulator receiver domain 34 145 IPR001789 GO:0000160
Lsi02g00088 618 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR1 4 589 - -
Lsi02g00088 618 MobiDBLite consensus disorder prediction 374 414 - -
Lsi02g00088 618 SMART REC_2 32 147 IPR001789 GO:0000160
Lsi02g00088 618 MobiDBLite consensus disorder prediction 511 527 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00088 K12127 TOC1, APRR1; pseudo-response regulator 1 - pvy:116113656 655.981
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01374 Lsi-Chr1:11925848 Lsi02g00088 Lsi-Chr2:735922 1.09E-06 dispersed
Lsi02g00088 Lsi-Chr2:735922 Lsi08g01621 Lsi-Chr8:24136876 1.11E-19 dispersed
Lsi08g01015 Lsi-Chr8:18728509 Lsi02g00088 Lsi-Chr2:735922 1.58E-10 dispersed
Lsi08g01017 Lsi-Chr8:18737338 Lsi02g00088 Lsi-Chr2:735922 1.45E-08 dispersed
Lsi02g00088 Lsi-Chr2:735922 Lsi05g01569 Lsi-Chr5:23459437 1.82E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g586 . . . . . . . . . . . . . Car11g00166 . . Cpe04g01485 . . . . . . . . . . . . . . . . . . Lsi02g00088 . Chy12g01526 Cme12g01975 . . . . . . . . Sed08g2087 . Cmo11g00182 . . . . . . Bhi08g01139 Tan05g2421 Cmetu12g2014 Lac10g0096 Hepe07g2494 . . Cla04g01184 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003640 0 1 1 1 1 1 3 1 1 1 1 1 3 1 1 3 1 2 2 1 1 2 4 2 2 1 2 3 2 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24732 PF00072 Response_reg 9.70E-17 CL0304 Lsi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00088 Lsi_Chr02 FPKM 53.58564 54.487259 64.424591 63.001499 52.963863 58.010395 54.527225 67.620285 64.721893 65.024826