Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00091 ATGGCGCTGTTTAGAAAATTATTCTACAGGAAGCCTCCAGATCGGCTTCTCGAGATCGCGGAGAGAGTGTACGTGTTTGATTGTTGCTTCTCTACCGAGGTGTTGGAGGAGGATGAGTACAAAGTGTACTTGGCTAGCATTATACCAAAGCTGCAAGACCACTTTCCTGATGCATCTTTCATGGTGTTTAACTTTAGTGAACGAAAGAGAAAGACTAAAACTTCGGACATACTGTCTCATTATGGTATGACAGTGATGGAATATCCTTTGCAATATGAAGGGTGTTCCCTACTGCCATTGGAGATGATCCACCACTTCATTCGGTCGAGTGAAAGCTGGTTGTCATTGGAGAGACAGAAAAATGTATTGTTGATGAACTGTGAACGAGGAGGATGGCCAATCCTTGCTTTCATGCTTTCAGGTCTTTTATTGTACCGTAAACAATATGAGGGGGAGCAGAAGACCCTTGAAATGGTCTACAGGCAAGCTCCTAGAGAACTTTTCCATGTCCTTTCTCCAGTAAACTCGCAGCCTTCTCAAATGAGATACCTTCAGTATATTTCTAGGAGAAATTTAGGTTCTGATTGGCCTCCACCTGATACACCCCTAATTTTAGACTGTCTGATACTTCGAGAGCTTCCTATGCTTGATGGAGGAAAAGGGTGGAGGCCTATCATACGCATTTACAGTCAGGACCCATTAACACCACGAAATAGAAGCCCAAAACTTGTTTTTTCGAGTGCAAAGATGGAAAGACATGGTTGCCAGTATCTACAGGCAGCAAGCAGACTGGTAAAAGTGGATGCCCATTGTCATGTTCAAGGCGATGTTGTTCTTGAATGCATCCATTTAGATGGAGATCTAATACACGAGGAAGTGATGTTTAGAATTATGTTTCACACAGCATTTGTGCATTCAAACAGTTTGAAGCTCAATCGTGATGAGGTTGATGTTTTATGGGATGCCAAGGAGCAGTTTCCTAAAGATTTTAGAGCAGAGGTACTTTTTCTGGATGCTGATCATGTTGTGCCAAACAACTCTACAGCGACGAGAAGTGATGATAAAATTGAAATTGAAAGCAATTCGACTGAGGAGTTTTTTGAAGTGGAAGAAATATTTAGCAATATTGTTGACGTGCAGGAAGTTAAGAGGGATTATGATGTTCAAATGGTACATGCTAACGAAACAGACTATATCGAGCATCAAGCAATTTGGAAGGAGGATTCCGATCCTCCTACATTCCAACGCTGTAAATCATTTGGAGGGAGTCAAAACTTGGACAAGAAGATGGATTGTAACGTTGAAGCAGTGAAGGACATTACTGTTGATGATGTAACTTTCAAGACAGCTGAAAAAGTAGACTCTGGTCTTCAAGTAGTGAAGGACATTGTTGTGGATTATGGAGATAAGAAGCCAAATCCTCTGCTATTTTCTATTAATGTACTGAGACGTATGGCAATCAAGGAACTGATAGATGATGCTTATGACAAGTTGGAAGGGGTGCAGCATAAAGGGTATGGAGAAGATACTGCCATTCCACACTTTGAATCAAAGGTTCCTTCGAAAAAGTTGGAAGCTGATGCATGGAGGCTTAAATATGAGAAGTTGCAATCAACATCAAGGAAACAGCCGTCATCAACAGTTAAGCTAATAAATCATGCATTTGTAGCTAAACAGAAAACCAAACAGCCAGAAGATCAGGACTTTCTTGTAAAACAGACCAAACCAAATACTCTTTCTAGATGGATTCCACATGAGAAAGAATCTTACACAAACTCCATGGATTTGTTTTATCCACCATCAAGGCATACTGGTGCCTCAGCAACATCTATTAGTTCTCCTACTAAAGATTCTTATTCGTTTCCAACTTCAAAATCTGCTTCTGCTTCTGCTACTTCAGGACTGCTGCTGTCTGATTCAGCTGATGAACAAAAAAGTAACAAGGCGAGTCCTAAAAGACCTTTATGTTCTGCAACAGAGATTCTCACGAGTAAACCACAATCACCACTTGACTTGTCAAGACCATTGCCAAACGCTGTTCTGCATCAAGATGCTACTCTTCCTCTATCTCCTATTAGACTTCTACAGCTACCCGCTCAGCAGGCTAACACATCTTTCTTGGATGCATCATCTCCTAAATCTTCTCTGTCACCCTCTTCATATATTTACAAAATTGCAAGATCTCCTCCTCCAGCTCCAGCTCCACCACCACCTCCTCCACCTTCCAATCACGTTGCAGCTAAAAGCTCAGCATTAGTGTGTGGAAATACACCTAAGCATAGTGCTCCACCAGCACCACCTCCACCTCCCATACGTAGAGCTCAACCACAATTACCTCCCCCACGACCATCCCCTTCACATGGAGCTCTGCTTTCTCCACGCCTATCAAATGTTGGACCTTTGCCACCACCCCCTCCGCCTCCTCCTCCAATTCAGAGGACAGCTCCTCCACATTCAACCCAGGGGCAACAGGCTTTAACATCTGCAGCAGCCTGTGTTGTCTCATCTTCCCTGCCATCTCAAATTTGTGAAGCACCATCACCTCCTCAACCTACAAGTGGTCCCGTTCCACTGGTTCCTTCTTCTTACCAACCTTCAGGTGGTATGAGTCCACACCCGGGAGCTAAAGGAGTAAGTTCTTCAACTGATGTGAAAACATCATCTATAGTGAGGGGACGTGGGTTCTTGCGATCAATTGGCATGGGGGTGGCTACTACAGGGCCTCAACGATCATCATTGAAACCTCTGCATTGGAGCAAGGTAACTCGGGTACTACAAGGGAGCTTATGGGAAGAATTGCAAAGATGCGGAGAATCAGAAAGGTGTTATAACTTCTCCTACGAATTTAGTGCACCAGAATTTGATGTATCTGAGCTGGAGACGCTTTTCTCTGTGATTGTCCCTAAACCTATTGTTGATTCTGGAGGTAAATCTGGAGGACGAAGGAAGTCAGTTGGATCAAAATTGGACAAAGTTCACTTGATTGATCTTAGGAGGGCAAATAACACTGAAATCATGCTAACAAAAGTTAGGATGCCACTATCTGACATGATGGCAGCAGTACTCTCCATGGATGAGTCAGTATTAGATGTAGATCAAGTGGAAAATCTTATCAAATTTTGCCCCACCAAAGAGGAGATGGAGCTTCTCAAGGTTGTTTGTTCAAAAATTTGTAAGGGATACTCTGGTGACAAGGATAAACTTGGCAAGTGCGAACAGTACTTTTTGGAGATGATGCAAGTTCCTCGTGTGGAGTCGAAGTTAAGAGTGTTTTCTTTCAAGATTCACTTCAGCTCTCAGATAGCGGAGTTCAAAAAAAGCCTAAACACTGTAAACTCTGTCTGCCAAGAGGTGAAGAATTCTCGCAAATTGAAGGAGATATTGAAGAGAATTCTTTGCCTGGGAAATATGCTGAACCAAGGAACTGCTAGGGGTTCTGCAATTGGATTCAGGTTGGACAGTCTCTCAAAACTCACTGATACACGTGCTTCTAACAATAAGTTGACTCTCATGCATTATCTGTGTAAGGTCCTTGCTTCAAAGTCACCATCACTTCTTGATTTTCATCTGGACCTTGGTAGCTTAGAAGCTGCATCTAAGATACAATTGAAATCTTTGGCAGAAGAAATGCAAGCAATAACAAAAGGATTGGAAAAGGTGAAGCAGGAACTGGTTGCATCTGAAAGCGATGGCCCCATCTCTGAAACTTTTCATAAGATATTGGAAGGATTTGTTGCTCTTGCCGAGATGGAGGTGGAATCTGTGACAGTTCTTTACTCAGTGGCGGGTAGAAATGCTGATGCACTTGCACTATATTTTGGCGAGGATCCTGCCCGTTGTCCATTTGAACAAGGTTAG 3858 42.79 MALFRKLFYRKPPDRLLEIAERVYVFDCCFSTEVLEEDEYKVYLASIIPKLQDHFPDASFMVFNFSERKRKTKTSDILSHYGMTVMEYPLQYEGCSLLPLEMIHHFIRSSESWLSLERQKNVLLMNCERGGWPILAFMLSGLLLYRKQYEGEQKTLEMVYRQAPRELFHVLSPVNSQPSQMRYLQYISRRNLGSDWPPPDTPLILDCLILRELPMLDGGKGWRPIIRIYSQDPLTPRNRSPKLVFSSAKMERHGCQYLQAASRLVKVDAHCHVQGDVVLECIHLDGDLIHEEVMFRIMFHTAFVHSNSLKLNRDEVDVLWDAKEQFPKDFRAEVLFLDADHVVPNNSTATRSDDKIEIESNSTEEFFEVEEIFSNIVDVQEVKRDYDVQMVHANETDYIEHQAIWKEDSDPPTFQRCKSFGGSQNLDKKMDCNVEAVKDITVDDVTFKTAEKVDSGLQVVKDIVVDYGDKKPNPLLFSINVLRRMAIKELIDDAYDKLEGVQHKGYGEDTAIPHFESKVPSKKLEADAWRLKYEKLQSTSRKQPSSTVKLINHAFVAKQKTKQPEDQDFLVKQTKPNTLSRWIPHEKESYTNSMDLFYPPSRHTGASATSISSPTKDSYSFPTSKSASASATSGLLLSDSADEQKSNKASPKRPLCSATEILTSKPQSPLDLSRPLPNAVLHQDATLPLSPIRLLQLPAQQANTSFLDASSPKSSLSPSSYIYKIARSPPPAPAPPPPPPPSNHVAAKSSALVCGNTPKHSAPPAPPPPPIRRAQPQLPPPRPSPSHGALLSPRLSNVGPLPPPPPPPPPIQRTAPPHSTQGQQALTSAAACVVSSSLPSQICEAPSPPQPTSGPVPLVPSSYQPSGGMSPHPGAKGVSSSTDVKTSSIVRGRGFLRSIGMGVATTGPQRSSLKPLHWSKVTRVLQGSLWEELQRCGESERCYNFSYEFSAPEFDVSELETLFSVIVPKPIVDSGGKSGGRRKSVGSKLDKVHLIDLRRANNTEIMLTKVRMPLSDMMAAVLSMDESVLDVDQVENLIKFCPTKEEMELLKVVCSKICKGYSGDKDKLGKCEQYFLEMMQVPRVESKLRVFSFKIHFSSQIAEFKKSLNTVNSVCQEVKNSRKLKEILKRILCLGNMLNQGTARGSAIGFRLDSLSKLTDTRASNNKLTLMHYLCKVLASKSPSLLDFHLDLGSLEAASKIQLKSLAEEMQAITKGLEKVKQELVASESDGPISETFHKILEGFVALAEMEVESVTVLYSVAGRNADALALYFGEDPARCPFEQG 1285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 754442 765043 - Lsi02G000910.1 Lsi02g00091 654833

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00091 1285 Pfam Formin Homology 2 Domain 908 1283 IPR015425 -
Lsi02g00091 1285 ProSiteProfiles Formin homology-2 (FH2) domain profile. 903 1285 IPR015425 -
Lsi02g00091 1285 SMART PTEN_C2_2 198 338 IPR014020 -
Lsi02g00091 1285 Pfam C2 domain of PTEN tumour-suppressor protein 199 336 IPR014020 -
Lsi02g00091 1285 Gene3D - 205 336 - -
Lsi02g00091 1285 MobiDBLite consensus disorder prediction 728 744 - -
Lsi02g00091 1285 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Lsi02g00091 1285 MobiDBLite consensus disorder prediction 640 675 - -
Lsi02g00091 1285 MobiDBLite consensus disorder prediction 723 831 - -
Lsi02g00091 1285 Gene3D Formin, FH2 domain 904 1284 IPR042201 -
Lsi02g00091 1285 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 188 IPR029021 -
Lsi02g00091 1285 MobiDBLite consensus disorder prediction 601 627 - -
Lsi02g00091 1285 MobiDBLite consensus disorder prediction 816 831 - -
Lsi02g00091 1285 MobiDBLite consensus disorder prediction 797 815 - -
Lsi02g00091 1285 Gene3D Protein tyrosine phosphatase superfamily 14 204 IPR029021 -
Lsi02g00091 1285 PANTHER FORMIN-J 1 1278 - -
Lsi02g00091 1285 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 336 IPR035892 -
Lsi02g00091 1285 MobiDBLite consensus disorder prediction 760 787 - -
Lsi02g00091 1285 SUPERFAMILY Formin homology 2 domain (FH2 domain) 800 1281 - -
Lsi02g00091 1285 SMART it6_source 903 1284 IPR015425 -
Lsi02g00091 1285 Coils Coil 1203 1223 - -
Lsi02g00091 1285 MobiDBLite consensus disorder prediction 862 886 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00091 - - - bhj:120083459 2189.85
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi02g00091 Lsi06g01445 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00091 Lsi-Chr2:754442 Lsi10g00514 Lsi-Chr10:7336609 1.04E-27 dispersed
Lsi04g02074 Lsi-Chr4:27894458 Lsi02g00091 Lsi-Chr2:754442 2.26E-138 transposed
Lsi06g01160 Lsi-Chr6:21828406 Lsi02g00091 Lsi-Chr2:754442 4.30E-131 transposed
Lsi06g01445 Lsi-Chr6:25001154 Lsi02g00091 Lsi-Chr2:754442 1.28E-155 transposed
Lsi02g00091 Lsi-Chr2:754442 Lsi06g01444 Lsi-Chr6:24992843 1.78E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g592 Blo04g00779 Blo16g00180 . . . Bpe13g00300 Bma06g00166 . . . Cma10g00209 Cma11g00123 Car10g00196 Car11g00171 . Cpe20g00055 Cpe04g01480 Bhi02g00293 Tan09g2089 . . Hepe09g0095 . . Cla06g01570 Cam06g1735 Cec06g1796 Cco06g1795 Clacu06g1702 Cmu06g1648 Cre06g2459 Cone2ag0827 Cone16ag0189 Cone13ag0054 . Lsi02g00091 Csa01g00571 Chy12g01523 Cme12g01971 . . Bda11g01706 Bda14g00861 . Bpe15g00594 Bma03g00847 . Sed08g0241 Cmo10g00227 Cmo11g00187 Cma13g01093 . Car13g00929 . . Cpe18g00780 Bhi08g01136 Tan05g2418 Cmetu02g1238 Lac10g0118 Hepe07g2490 . . Cla04g01181 Cam04g1237 Cec01g1748 Cco01g1794 Clacu04g1265 Cmu04g1244 Cre01g1538 Lsi06g01445 Csa01g00260 Chy02g02475 Cme02g01861
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi11g00020 . 462 942 FH2 protein (formin) Gene Family AT3G25500 66.5 3.9e-165 579.3
Lsi10g00514 . 431 887 FH2 protein (formin) Gene Family AT3G25500 60.3 2.7e-142 503.4
Lsi06g00120 . 490 887 FH2 protein (formin) Gene Family AT3G25500 51.5 1.9e-103 374.4
Lsi05g01149 . 644 1067 FH2 protein (formin) Gene Family AT2G43800 63.4 1.2e-141 501.1
Lsi10g00514 . 465 903 FH2 protein (formin) Gene Family AT2G43800 55.1 2.3e-126 450.3
Lsi10g00161 . 285 593 FH2 protein (formin) Gene Family AT4G15200 54.4 7.6e-52 201.8
Lsi04g01249 . 447 593 FH2 protein (formin) Gene Family AT4G15200 66.7 4.3e-47 186.0
Lsi04g01249 . 7 885 FH2 protein (formin) Gene Family AT5G54650 51.5 1.3e-172 604.0
Lsi10g00161 . 447 915 FH2 protein (formin) Gene Family AT5G54650 61.1 3.5e-154 542.7
Lsi05g01149 . 655 1056 FH2 protein (formin) Gene Family AT5G54650 50.8 2.8e-103 373.6
Lsi10g00514 . 31 906 FH2 protein (formin) Gene Family AT5G67470 57.6 6.2e-236 814.3
Lsi05g01149 . 636 1088 FH2 protein (formin) Gene Family AT5G67470 59.5 1.2e-135 481.1
Lsi11g00020 . 503 938 FH2 protein (formin) Gene Family AT5G67470 60.8 1.3e-129 461.1
Lsi06g00120 . 490 889 FH2 protein (formin) Gene Family AT5G67470 50.6 7.4e-104 375.6
Lsi04g00506 . 354 834 FH2 protein (formin) Gene Family AT1G59910 52.2 1.6e-125 447.6
Lsi05g01149 . 676 1057 FH2 protein (formin) Gene Family AT5G48360 52.9 3.0e-101 366.7
Lsi10g00514 . 489 864 FH2 protein (formin) Gene Family AT5G48360 50.5 9.0e-90 328.6
Lsi10g00514 . 469 863 FH2 protein (formin) Gene Family AT3G05470 52.3 2.4e-107 387.1
Lsi04g01249 . 453 868 FH2 protein (formin) Gene Family AT3G05470 50.2 1.2e-106 384.8
Lsi06g01445 CCT 21 368 FH2 protein (formin) Gene Family AT1G31810 63.2 3.7e-114 410.2
Lsi06g01444 . 1 322 FH2 protein (formin) Gene Family AT1G31810 53.5 2.8e-106 384.0
Lsi06g01445 CCT 20 374 FH2 protein (formin) Gene Family AT5G07650 68.2 5.1e-125 445.7
Lsi02g00091 CCT 995 1284 FH2 protein (formin) Gene Family AT5G07650 69.7 6.7e-109 392.1
Lsi04g02074 . 1059 1378 FH2 protein (formin) Gene Family AT5G07650 60.3 5.3e-98 355.9
Lsi06g01160 . 906 1209 FH2 protein (formin) Gene Family AT5G07650 57.8 7.2e-95 345.5
Lsi06g01445 CCT 21 367 FH2 protein (formin) Gene Family AT5G07770 65.1 1.2e-115 414.1
Lsi02g00091 CCT 909 1284 FH2 protein (formin) Gene Family AT5G07770 61.3 1.6e-115 413.7
Lsi04g02074 . 983 1370 FH2 protein (formin) Gene Family AT5G07770 54.2 1.1e-105 380.9
Lsi06g01160 . 829 1201 FH2 protein (formin) Gene Family AT5G07770 53.7 1.2e-102 370.9
Lsi04g02074 . 975 1378 FH2 protein (formin) Gene Family AT3G32400 69.9 3.6e-153 538.5
Lsi06g01160 . 836 1210 FH2 protein (formin) Gene Family AT3G32400 65.8 2.0e-135 479.6
Lsi02g00091 CCT 879 1284 FH2 protein (formin) Gene Family AT3G32400 56.3 1.9e-117 419.9
Lsi06g01445 CCT 21 374 FH2 protein (formin) Gene Family AT3G32400 63.0 4.2e-117 418.7
Lsi06g01160 . 3 1210 FH2 protein (formin) Gene Family AT2G25050 50.6 8.8e-267 917.1
Lsi06g01445 CCT 21 374 FH2 protein (formin) Gene Family AT2G25050 66.4 1.0e-121 435.3
Lsi06g01444 . 1 316 FH2 protein (formin) Gene Family AT2G25050 61.7 1.1e-112 405.2
Lsi06g01445 CCT 21 374 FH2 protein (formin) Gene Family AT5G07780 62.0 7.7e-105 377.9
Lsi02g00091 CCT 910 1284 FH2 protein (formin) Gene Family AT5G07780 55.8 1.0e-101 367.5
Lsi06g01160 . 836 1209 FH2 protein (formin) Gene Family AT5G07780 50.2 4.5e-89 325.5
Lsi06g01444 . 1 590 FH2 protein (formin) Gene Family AT5G07740 57.6 2.5e-166 583.9
Lsi06g01445 CCT 21 383 FH2 protein (formin) Gene Family AT5G07740 75.5 2.9e-143 507.3
Lsi06g01445 CCT 14 381 FH2 protein (formin) Gene Family AT5G07760 67.0 6.8e-123 438.7
Lsi02g00091 CCT 994 1284 FH2 protein (formin) Gene Family AT5G07760 69.4 1.8e-107 387.5
Lsi04g02074 . 1058 1387 FH2 protein (formin) Gene Family AT5G07760 58.4 3.8e-97 353.2
Lsi06g01160 . 905 1209 FH2 protein (formin) Gene Family AT5G07760 60.2 2.5e-96 350.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001040 2 2 4 3 2 2 4 2 2 2 2 2 4 2 2 5 2 4 4 2 2 2 4 2 2 3 3 6 3 1 82
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00091 Lsi_Chr02 FPKM 47.126606 50.808868 20.15797 19.41559 2.3142 2.53556 1.378199 0.527258 0.719395 0.450514