Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00091 ATGGCGCTGTTTAGAAAATTATTCTACAGGAAGCCTCCAGATCGGCTTCTCGAGATCGCGGAGAGAGTGTACGTGTTTGATTGTTGCTTCTCTACCGAGGTGTTGGAGGAGGATGAGTACAAAGTGTACTTGGCTAGCATTATACCAAAGCTGCAAGACCACTTTCCTGATGCATCTTTCATGGTGTTTAACTTTAGTGAACGAAAGAGAAAGACTAAAACTTCGGACATACTGTCTCATTATGGTATGACAGTGATGGAATATCCTTTGCAATATGAAGGGTGTTCCCTACTGCCATTGGAGATGATCCACCACTTCATTCGGTCGAGTGAAAGCTGGTTGTCATTGGAGAGACAGAAAAATGTATTGTTGATGAACTGTGAACGAGGAGGATGGCCAATCCTTGCTTTCATGCTTTCAGGTCTTTTATTGTACCGTAAACAATATGAGGGGGAGCAGAAGACCCTTGAAATGGTCTACAGGCAAGCTCCTAGAGAACTTTTCCATGTCCTTTCTCCAGTAAACTCGCAGCCTTCTCAAATGAGATACCTTCAGTATATTTCTAGGAGAAATTTAGGTTCTGATTGGCCTCCACCTGATACACCCCTAATTTTAGACTGTCTGATACTTCGAGAGCTTCCTATGCTTGATGGAGGAAAAGGGTGGAGGCCTATCATACGCATTTACAGTCAGGACCCATTAACACCACGAAATAGAAGCCCAAAACTTGTTTTTTCGAGTGCAAAGATGGAAAGACATGGTTGCCAGTATCTACAGGCAGCAAGCAGACTGGTAAAAGTGGATGCCCATTGTCATGTTCAAGGCGATGTTGTTCTTGAATGCATCCATTTAGATGGAGATCTAATACACGAGGAAGTGATGTTTAGAATTATGTTTCACACAGCATTTGTGCATTCAAACAGTTTGAAGCTCAATCGTGATGAGGTTGATGTTTTATGGGATGCCAAGGAGCAGTTTCCTAAAGATTTTAGAGCAGAGGTACTTTTTCTGGATGCTGATCATGTTGTGCCAAACAACTCTACAGCGACGAGAAGTGATGATAAAATTGAAATTGAAAGCAATTCGACTGAGGAGTTTTTTGAAGTGGAAGAAATATTTAGCAATATTGTTGACGTGCAGGAAGTTAAGAGGGATTATGATGTTCAAATGGTACATGCTAACGAAACAGACTATATCGAGCATCAAGCAATTTGGAAGGAGGATTCCGATCCTCCTACATTCCAACGCTGTAAATCATTTGGAGGGAGTCAAAACTTGGACAAGAAGATGGATTGTAACGTTGAAGCAGTGAAGGACATTACTGTTGATGATGTAACTTTCAAGACAGCTGAAAAAGTAGACTCTGGTCTTCAAGTAGTGAAGGACATTGTTGTGGATTATGGAGATAAGAAGCCAAATCCTCTGCTATTTTCTATTAATGTACTGAGACGTATGGCAATCAAGGAACTGATAGATGATGCTTATGACAAGTTGGAAGGGGTGCAGCATAAAGGGTATGGAGAAGATACTGCCATTCCACACTTTGAATCAAAGGTTCCTTCGAAAAAGTTGGAAGCTGATGCATGGAGGCTTAAATATGAGAAGTTGCAATCAACATCAAGGAAACAGCCGTCATCAACAGTTAAGCTAATAAATCATGCATTTGTAGCTAAACAGAAAACCAAACAGCCAGAAGATCAGGACTTTCTTGTAAAACAGACCAAACCAAATACTCTTTCTAGATGGATTCCACATGAGAAAGAATCTTACACAAACTCCATGGATTTGTTTTATCCACCATCAAGGCATACTGGTGCCTCAGCAACATCTATTAGTTCTCCTACTAAAGATTCTTATTCGTTTCCAACTTCAAAATCTGCTTCTGCTTCTGCTACTTCAGGACTGCTGCTGTCTGATTCAGCTGATGAACAAAAAAGTAACAAGGCGAGTCCTAAAAGACCTTTATGTTCTGCAACAGAGATTCTCACGAGTAAACCACAATCACCACTTGACTTGTCAAGACCATTGCCAAACGCTGTTCTGCATCAAGATGCTACTCTTCCTCTATCTCCTATTAGACTTCTACAGCTACCCGCTCAGCAGGCTAACACATCTTTCTTGGATGCATCATCTCCTAAATCTTCTCTGTCACCCTCTTCATATATTTACAAAATTGCAAGATCTCCTCCTCCAGCTCCAGCTCCACCACCACCTCCTCCACCTTCCAATCACGTTGCAGCTAAAAGCTCAGCATTAGTGTGTGGAAATACACCTAAGCATAGTGCTCCACCAGCACCACCTCCACCTCCCATACGTAGAGCTCAACCACAATTACCTCCCCCACGACCATCCCCTTCACATGGAGCTCTGCTTTCTCCACGCCTATCAAATGTTGGACCTTTGCCACCACCCCCTCCGCCTCCTCCTCCAATTCAGAGGACAGCTCCTCCACATTCAACCCAGGGGCAACAGGCTTTAACATCTGCAGCAGCCTGTGTTGTCTCATCTTCCCTGCCATCTCAAATTTGTGAAGCACCATCACCTCCTCAACCTACAAGTGGTCCCGTTCCACTGGTTCCTTCTTCTTACCAACCTTCAGGTGGTATGAGTCCACACCCGGGAGCTAAAGGAGTAAGTTCTTCAACTGATGTGAAAACATCATCTATAGTGAGGGGACGTGGGTTCTTGCGATCAATTGGCATGGGGGTGGCTACTACAGGGCCTCAACGATCATCATTGAAACCTCTGCATTGGAGCAAGGTAACTCGGGTACTACAAGGGAGCTTATGGGAAGAATTGCAAAGATGCGGAGAATCAGAAAGGTGTTATAACTTCTCCTACGAATTTAGTGCACCAGAATTTGATGTATCTGAGCTGGAGACGCTTTTCTCTGTGATTGTCCCTAAACCTATTGTTGATTCTGGAGGTAAATCTGGAGGACGAAGGAAGTCAGTTGGATCAAAATTGGACAAAGTTCACTTGATTGATCTTAGGAGGGCAAATAACACTGAAATCATGCTAACAAAAGTTAGGATGCCACTATCTGACATGATGGCAGCAGTACTCTCCATGGATGAGTCAGTATTAGATGTAGATCAAGTGGAAAATCTTATCAAATTTTGCCCCACCAAAGAGGAGATGGAGCTTCTCAAGGTTGTTTGTTCAAAAATTTGTAAGGGATACTCTGGTGACAAGGATAAACTTGGCAAGTGCGAACAGTACTTTTTGGAGATGATGCAAGTTCCTCGTGTGGAGTCGAAGTTAAGAGTGTTTTCTTTCAAGATTCACTTCAGCTCTCAGATAGCGGAGTTCAAAAAAAGCCTAAACACTGTAAACTCTGTCTGCCAAGAGGTGAAGAATTCTCGCAAATTGAAGGAGATATTGAAGAGAATTCTTTGCCTGGGAAATATGCTGAACCAAGGAACTGCTAGGGGTTCTGCAATTGGATTCAGGTTGGACAGTCTCTCAAAACTCACTGATACACGTGCTTCTAACAATAAGTTGACTCTCATGCATTATCTGTGTAAGGTCCTTGCTTCAAAGTCACCATCACTTCTTGATTTTCATCTGGACCTTGGTAGCTTAGAAGCTGCATCTAAGATACAATTGAAATCTTTGGCAGAAGAAATGCAAGCAATAACAAAAGGATTGGAAAAGGTGAAGCAGGAACTGGTTGCATCTGAAAGCGATGGCCCCATCTCTGAAACTTTTCATAAGATATTGGAAGGATTTGTTGCTCTTGCCGAGATGGAGGTGGAATCTGTGACAGTTCTTTACTCAGTGGCGGGTAGAAATGCTGATGCACTTGCACTATATTTTGGCGAGGATCCTGCCCGTTGTCCATTTGAACAAGGTTAG 3858 42.79 MALFRKLFYRKPPDRLLEIAERVYVFDCCFSTEVLEEDEYKVYLASIIPKLQDHFPDASFMVFNFSERKRKTKTSDILSHYGMTVMEYPLQYEGCSLLPLEMIHHFIRSSESWLSLERQKNVLLMNCERGGWPILAFMLSGLLLYRKQYEGEQKTLEMVYRQAPRELFHVLSPVNSQPSQMRYLQYISRRNLGSDWPPPDTPLILDCLILRELPMLDGGKGWRPIIRIYSQDPLTPRNRSPKLVFSSAKMERHGCQYLQAASRLVKVDAHCHVQGDVVLECIHLDGDLIHEEVMFRIMFHTAFVHSNSLKLNRDEVDVLWDAKEQFPKDFRAEVLFLDADHVVPNNSTATRSDDKIEIESNSTEEFFEVEEIFSNIVDVQEVKRDYDVQMVHANETDYIEHQAIWKEDSDPPTFQRCKSFGGSQNLDKKMDCNVEAVKDITVDDVTFKTAEKVDSGLQVVKDIVVDYGDKKPNPLLFSINVLRRMAIKELIDDAYDKLEGVQHKGYGEDTAIPHFESKVPSKKLEADAWRLKYEKLQSTSRKQPSSTVKLINHAFVAKQKTKQPEDQDFLVKQTKPNTLSRWIPHEKESYTNSMDLFYPPSRHTGASATSISSPTKDSYSFPTSKSASASATSGLLLSDSADEQKSNKASPKRPLCSATEILTSKPQSPLDLSRPLPNAVLHQDATLPLSPIRLLQLPAQQANTSFLDASSPKSSLSPSSYIYKIARSPPPAPAPPPPPPPSNHVAAKSSALVCGNTPKHSAPPAPPPPPIRRAQPQLPPPRPSPSHGALLSPRLSNVGPLPPPPPPPPPIQRTAPPHSTQGQQALTSAAACVVSSSLPSQICEAPSPPQPTSGPVPLVPSSYQPSGGMSPHPGAKGVSSSTDVKTSSIVRGRGFLRSIGMGVATTGPQRSSLKPLHWSKVTRVLQGSLWEELQRCGESERCYNFSYEFSAPEFDVSELETLFSVIVPKPIVDSGGKSGGRRKSVGSKLDKVHLIDLRRANNTEIMLTKVRMPLSDMMAAVLSMDESVLDVDQVENLIKFCPTKEEMELLKVVCSKICKGYSGDKDKLGKCEQYFLEMMQVPRVESKLRVFSFKIHFSSQIAEFKKSLNTVNSVCQEVKNSRKLKEILKRILCLGNMLNQGTARGSAIGFRLDSLSKLTDTRASNNKLTLMHYLCKVLASKSPSLLDFHLDLGSLEAASKIQLKSLAEEMQAITKGLEKVKQELVASESDGPISETFHKILEGFVALAEMEVESVTVLYSVAGRNADALALYFGEDPARCPFEQG 1285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 754442 765043 - Lsi02G000910.1 Lsi02g00091 654833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00091 1285 Pfam Formin Homology 2 Domain 908 1283 IPR015425 -
Lsi02g00091 1285 ProSiteProfiles Formin homology-2 (FH2) domain profile. 903 1285 IPR015425 -
Lsi02g00091 1285 SMART PTEN_C2_2 198 338 IPR014020 -
Lsi02g00091 1285 Pfam C2 domain of PTEN tumour-suppressor protein 199 336 IPR014020 -
Lsi02g00091 1285 Gene3D - 205 336 - -
Lsi02g00091 1285 MobiDBLite consensus disorder prediction 728 744 - -
Lsi02g00091 1285 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Lsi02g00091 1285 MobiDBLite consensus disorder prediction 640 675 - -
Lsi02g00091 1285 MobiDBLite consensus disorder prediction 723 831 - -
Lsi02g00091 1285 Gene3D Formin, FH2 domain 904 1284 IPR042201 -
Lsi02g00091 1285 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 188 IPR029021 -
Lsi02g00091 1285 MobiDBLite consensus disorder prediction 601 627 - -
Lsi02g00091 1285 MobiDBLite consensus disorder prediction 816 831 - -
Lsi02g00091 1285 MobiDBLite consensus disorder prediction 797 815 - -
Lsi02g00091 1285 Gene3D Protein tyrosine phosphatase superfamily 14 204 IPR029021 -
Lsi02g00091 1285 PANTHER FORMIN-J 1 1278 - -
Lsi02g00091 1285 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 336 IPR035892 -
Lsi02g00091 1285 MobiDBLite consensus disorder prediction 760 787 - -
Lsi02g00091 1285 SUPERFAMILY Formin homology 2 domain (FH2 domain) 800 1281 - -
Lsi02g00091 1285 SMART it6_source 903 1284 IPR015425 -
Lsi02g00091 1285 Coils Coil 1203 1223 - -
Lsi02g00091 1285 MobiDBLite consensus disorder prediction 862 886 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi02g00091 Lsi06g01445 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00091 Lsi-Chr2:754442 Lsi10g00514 Lsi-Chr10:7336609 1.04E-27 dispersed
Lsi04g02074 Lsi-Chr4:27894458 Lsi02g00091 Lsi-Chr2:754442 2.26E-138 transposed
Lsi06g01160 Lsi-Chr6:21828406 Lsi02g00091 Lsi-Chr2:754442 4.30E-131 transposed
Lsi06g01445 Lsi-Chr6:25001154 Lsi02g00091 Lsi-Chr2:754442 1.28E-155 transposed
Lsi02g00091 Lsi-Chr2:754442 Lsi06g01444 Lsi-Chr6:24992843 1.78E-31 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00091 - - bhj:120083459 2189.85