Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi02g00092 | ATGGGGTGTGTGAACTCGAAGCAGGCGGTGTCCGTCACGCCTGCATTCGATCACTCCGGCGTCTTTCGAGACAATGAATCAACGGCGGTGGGGAACTCGGGTCGGAGCCGACTTGGGTTGGGGGAGATTGAGAAGAGTTCGAAGCCTAAGGCTAAGATGAAGACGAAGGGGTCCAGTGAGTTTAATGGGGTTGGGAGCGAGTTTGGTGAATCGGGGAGAGCGAGTTCGAATGGTGGAGGGAATGAGACTTTGAGCTTCAGATTGGGGAATTTGAACAAGTATATGGAAGGTGAACAAGTGGCGGCGGGGTGGCCGGCCTGGCTCAGCGCTGTCGCCGGTGAGGCCATTCAAGGTTGGGTTCCACTCCGGTCCGATGCCTATGAGAAGTTGGAAAAGATTGGACAAGGTACATATAGCAGTGTATTCCGAGCACGTGAACTCGAAACGGGAAAGATTGTTGCTTTAAAGAAGGTTCGATTCGACAATTTTGAGCCTGAAAGTGTTAGATTTATGGCACGAGAGATCATGATTCTCCGTAGGCTTGATCACCCTAACATCATCAAATTGGAGGGCTTAATTACGTCTCGTTTATCATGTAGCATTTATCTCGTGTTCGAGTACATGGACCACGACATTACTGGACTCTTGTCCTGCCCTGATATCACTTTTAGTGAATCACAGATTAAATGCTACATGAAACAATTGATATCCGGGCTTGAGCATTGTCACTCACGTGGTGTAATGCATCGGGATATTAAAGGATCTAATCTTCTAGTCAATAATGAAGGGGTATTGAAGGTGGCTGATTTTGGATTGGCAAACTTCTGTAATTCTGGGCACCGGCAACCTCTAACGAGTCGTGTTGTCACTCTATGGTATCGTCCTCCTGAACTTCTACTGGGTTCGACAGACTATAACGCATCTGTGGATCTTTGGAGTGTTGGCTGTGTTTTTGCAGAACTTCTAGTTGGAAAACCTATTCTTCAAGGAAGAACAGAGGTCGAACAGCTACACAAGATCTTCAAGCTTTGCGGCTCTCCTCCTGATGATTACTGGAAAAAATCTAAACTTCCTCATGCCACTTTGTTCAAGCCACAACATCCTTATAATAATTGTTTACGGCAGACCTTCAAAGATCATCCTTCAACGACTGTGAACTTGTTAGAAACTCTTCTTTCCGTGGAACCATACAAGCGCGGAGTTGCCTCCTCTGCTCTCACATCTGAGTATTTCAGTACGAAACCGTATGCATGCGATCCGTCAAGCATGCCTATATACCCACCTAACAAAGAGATTGATGCAAAACAAAGAGAGGAGACTAGAAGGAAAAAAGGTAGTGGAAGGGCCCGTGGACTAGATAACAGAAGGTTAACGCGAAAGCATCTTGGAATCAGTAAATTGGCACCAGCAGAGAAACAAATGAATGAGAAGGATGCAAAGGAGGCAAACATTGGATTTACAATTATACTATTCTTAGTGTCTACCACACTGCAAGGAAGTTCTCATTCATCCGCTTTAAATGTTGTACAGGACTTATCAGTCTCAGCTCGAGATTTGCATAAAATTAGTATTAATGCACAAAATCTTAAAGAAGAAAAGGTTATCAAAGGTGTTGAGGCGCAAAAGCTGTCTATTGATAAATTGGAAGAGACTATACATGTAAAGAATGCATCTCAAGGAGACATTCCCTTCTCTGGCCCCCTACAAGTTTCGACATCAAGTGGCTTTGCGTGGGCTAGACGACGAAGAGACGATGCCTCTATTAGATCTTATTCCAGGTCAATTTCAAGAGGACACCTAATTAATGGGCTGGACGATTCTACTACATTGCATTCAAGAAGCAATTTGGACTCTAAGTTTCATGAAAAGGGTGACATATCATCCATCAGCCGCTCAAGTTCCAAGGGTCATGAATCAAATGAGAGATCAAAGGTTGTGATAAGGAACCAGTGGGGCAAGTTTGAGCGTCCTGATTCCTTTGATACTTCGGATGAGTACCACTCGCAGGAATTTGCATCGGCACTGTATATGCGAGATGAAATGGAAGCTAAGAGAAATAATCTGAGTTATCAGGACCAAGTGGACAAAGTTGAATATTCTGGGCCCTTGTTAACTCAATCTAGCAGAGTGGATGAACTGCTAGACAGACACGAGAGGCATATCCGACAGACAGTTCGAAGATCATGGTTTCAAAGAGGTACTACTGACGATACAGATATTTTTTTCCGTTGA | 2232 | 44.4 | MGCVNSKQAVSVTPAFDHSGVFRDNESTAVGNSGRSRLGLGEIEKSSKPKAKMKTKGSSEFNGVGSEFGESGRASSNGGGNETLSFRLGNLNKYMEGEQVAAGWPAWLSAVAGEAIQGWVPLRSDAYEKLEKIGQGTYSSVFRARELETGKIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMDHDITGLLSCPDITFSESQIKCYMKQLISGLEHCHSRGVMHRDIKGSNLLVNNEGVLKVADFGLANFCNSGHRQPLTSRVVTLWYRPPELLLGSTDYNASVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDDYWKKSKLPHATLFKPQHPYNNCLRQTFKDHPSTTVNLLETLLSVEPYKRGVASSALTSEYFSTKPYACDPSSMPIYPPNKEIDAKQREETRRKKGSGRARGLDNRRLTRKHLGISKLAPAEKQMNEKDAKEANIGFTIILFLVSTTLQGSSHSSALNVVQDLSVSARDLHKISINAQNLKEEKVIKGVEAQKLSIDKLEETIHVKNASQGDIPFSGPLQVSTSSGFAWARRRRDDASIRSYSRSISRGHLINGLDDSTTLHSRSNLDSKFHEKGDISSISRSSSKGHESNERSKVVIRNQWGKFERPDSFDTSDEYHSQEFASALYMRDEMEAKRNNLSYQDQVDKVEYSGPLLTQSSRVDELLDRHERHIRQTVRRSWFQRGTTDDTDIFFR | 743 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 769670 | 774612 | - | Lsi02G000920.1 | Lsi02g00092 | 654834 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi02g00092 | 743 | PANTHER | BINDING PROTEIN, PUTATIVE-RELATED | 53 | 485 | - | - | |
Lsi02g00092 | 743 | MobiDBLite | consensus disorder prediction | 422 | 454 | - | - | |
Lsi02g00092 | 743 | Gene3D | Phosphorylase Kinase; domain 1 | 114 | 209 | - | - | |
Lsi02g00092 | 743 | PANTHER | CELL DIVISION PROTEIN KINASE | 534 | 731 | - | - | |
Lsi02g00092 | 743 | SMART | serkin_6 | 127 | 411 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi02g00092 | 743 | CDD | STKc_CDK9_like | 127 | 411 | - | - | |
Lsi02g00092 | 743 | MobiDBLite | consensus disorder prediction | 431 | 454 | - | - | |
Lsi02g00092 | 743 | SUPERFAMILY | Protein kinase-like (PK-like) | 121 | 417 | IPR011009 | - | |
Lsi02g00092 | 743 | PANTHER | BINDING PROTEIN, PUTATIVE-RELATED | 534 | 731 | - | - | |
Lsi02g00092 | 743 | PANTHER | CELL DIVISION PROTEIN KINASE | 53 | 485 | - | - | |
Lsi02g00092 | 743 | Pfam | Protein kinase domain | 127 | 411 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi02g00092 | 743 | MobiDBLite | consensus disorder prediction | 24 | 81 | - | - | |
Lsi02g00092 | 743 | MobiDBLite | consensus disorder prediction | 59 | 81 | - | - | |
Lsi02g00092 | 743 | MobiDBLite | consensus disorder prediction | 41 | 55 | - | - | |
Lsi02g00092 | 743 | Gene3D | Transferase(Phosphotransferase) domain 1 | 210 | 450 | - | - | |
Lsi02g00092 | 743 | ProSiteProfiles | Protein kinase domain profile. | 127 | 411 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi02g00092 | 743 | ProSitePatterns | Protein kinases ATP-binding region signature. | 133 | 156 | IPR017441 | GO:0005524 | |
Lsi02g00092 | 743 | MobiDBLite | consensus disorder prediction | 621 | 644 | - | - | |
Lsi02g00092 | 743 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 247 | 259 | IPR008271 | GO:0004672|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g00092 | Lsi-Chr2:769670 | Lsi03g00150 | Lsi-Chr3:2110348 | 4.23E-18 | dispersed | |
Lsi02g00092 | Lsi-Chr2:769670 | Lsi11g00478 | Lsi-Chr11:5048834 | 4.87E-180 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83328 | PF00069 | Pkinase | 2.00E-68 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi02g00092 | - | - | csv:101220347 | 1286.17 |