Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00092 ATGGGGTGTGTGAACTCGAAGCAGGCGGTGTCCGTCACGCCTGCATTCGATCACTCCGGCGTCTTTCGAGACAATGAATCAACGGCGGTGGGGAACTCGGGTCGGAGCCGACTTGGGTTGGGGGAGATTGAGAAGAGTTCGAAGCCTAAGGCTAAGATGAAGACGAAGGGGTCCAGTGAGTTTAATGGGGTTGGGAGCGAGTTTGGTGAATCGGGGAGAGCGAGTTCGAATGGTGGAGGGAATGAGACTTTGAGCTTCAGATTGGGGAATTTGAACAAGTATATGGAAGGTGAACAAGTGGCGGCGGGGTGGCCGGCCTGGCTCAGCGCTGTCGCCGGTGAGGCCATTCAAGGTTGGGTTCCACTCCGGTCCGATGCCTATGAGAAGTTGGAAAAGATTGGACAAGGTACATATAGCAGTGTATTCCGAGCACGTGAACTCGAAACGGGAAAGATTGTTGCTTTAAAGAAGGTTCGATTCGACAATTTTGAGCCTGAAAGTGTTAGATTTATGGCACGAGAGATCATGATTCTCCGTAGGCTTGATCACCCTAACATCATCAAATTGGAGGGCTTAATTACGTCTCGTTTATCATGTAGCATTTATCTCGTGTTCGAGTACATGGACCACGACATTACTGGACTCTTGTCCTGCCCTGATATCACTTTTAGTGAATCACAGATTAAATGCTACATGAAACAATTGATATCCGGGCTTGAGCATTGTCACTCACGTGGTGTAATGCATCGGGATATTAAAGGATCTAATCTTCTAGTCAATAATGAAGGGGTATTGAAGGTGGCTGATTTTGGATTGGCAAACTTCTGTAATTCTGGGCACCGGCAACCTCTAACGAGTCGTGTTGTCACTCTATGGTATCGTCCTCCTGAACTTCTACTGGGTTCGACAGACTATAACGCATCTGTGGATCTTTGGAGTGTTGGCTGTGTTTTTGCAGAACTTCTAGTTGGAAAACCTATTCTTCAAGGAAGAACAGAGGTCGAACAGCTACACAAGATCTTCAAGCTTTGCGGCTCTCCTCCTGATGATTACTGGAAAAAATCTAAACTTCCTCATGCCACTTTGTTCAAGCCACAACATCCTTATAATAATTGTTTACGGCAGACCTTCAAAGATCATCCTTCAACGACTGTGAACTTGTTAGAAACTCTTCTTTCCGTGGAACCATACAAGCGCGGAGTTGCCTCCTCTGCTCTCACATCTGAGTATTTCAGTACGAAACCGTATGCATGCGATCCGTCAAGCATGCCTATATACCCACCTAACAAAGAGATTGATGCAAAACAAAGAGAGGAGACTAGAAGGAAAAAAGGTAGTGGAAGGGCCCGTGGACTAGATAACAGAAGGTTAACGCGAAAGCATCTTGGAATCAGTAAATTGGCACCAGCAGAGAAACAAATGAATGAGAAGGATGCAAAGGAGGCAAACATTGGATTTACAATTATACTATTCTTAGTGTCTACCACACTGCAAGGAAGTTCTCATTCATCCGCTTTAAATGTTGTACAGGACTTATCAGTCTCAGCTCGAGATTTGCATAAAATTAGTATTAATGCACAAAATCTTAAAGAAGAAAAGGTTATCAAAGGTGTTGAGGCGCAAAAGCTGTCTATTGATAAATTGGAAGAGACTATACATGTAAAGAATGCATCTCAAGGAGACATTCCCTTCTCTGGCCCCCTACAAGTTTCGACATCAAGTGGCTTTGCGTGGGCTAGACGACGAAGAGACGATGCCTCTATTAGATCTTATTCCAGGTCAATTTCAAGAGGACACCTAATTAATGGGCTGGACGATTCTACTACATTGCATTCAAGAAGCAATTTGGACTCTAAGTTTCATGAAAAGGGTGACATATCATCCATCAGCCGCTCAAGTTCCAAGGGTCATGAATCAAATGAGAGATCAAAGGTTGTGATAAGGAACCAGTGGGGCAAGTTTGAGCGTCCTGATTCCTTTGATACTTCGGATGAGTACCACTCGCAGGAATTTGCATCGGCACTGTATATGCGAGATGAAATGGAAGCTAAGAGAAATAATCTGAGTTATCAGGACCAAGTGGACAAAGTTGAATATTCTGGGCCCTTGTTAACTCAATCTAGCAGAGTGGATGAACTGCTAGACAGACACGAGAGGCATATCCGACAGACAGTTCGAAGATCATGGTTTCAAAGAGGTACTACTGACGATACAGATATTTTTTTCCGTTGA 2232 44.4 MGCVNSKQAVSVTPAFDHSGVFRDNESTAVGNSGRSRLGLGEIEKSSKPKAKMKTKGSSEFNGVGSEFGESGRASSNGGGNETLSFRLGNLNKYMEGEQVAAGWPAWLSAVAGEAIQGWVPLRSDAYEKLEKIGQGTYSSVFRARELETGKIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMDHDITGLLSCPDITFSESQIKCYMKQLISGLEHCHSRGVMHRDIKGSNLLVNNEGVLKVADFGLANFCNSGHRQPLTSRVVTLWYRPPELLLGSTDYNASVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDDYWKKSKLPHATLFKPQHPYNNCLRQTFKDHPSTTVNLLETLLSVEPYKRGVASSALTSEYFSTKPYACDPSSMPIYPPNKEIDAKQREETRRKKGSGRARGLDNRRLTRKHLGISKLAPAEKQMNEKDAKEANIGFTIILFLVSTTLQGSSHSSALNVVQDLSVSARDLHKISINAQNLKEEKVIKGVEAQKLSIDKLEETIHVKNASQGDIPFSGPLQVSTSSGFAWARRRRDDASIRSYSRSISRGHLINGLDDSTTLHSRSNLDSKFHEKGDISSISRSSSKGHESNERSKVVIRNQWGKFERPDSFDTSDEYHSQEFASALYMRDEMEAKRNNLSYQDQVDKVEYSGPLLTQSSRVDELLDRHERHIRQTVRRSWFQRGTTDDTDIFFR 743
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 769670 774612 - Lsi02G000920.1 Lsi02g00092 654834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00092 743 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 53 485 - -
Lsi02g00092 743 MobiDBLite consensus disorder prediction 422 454 - -
Lsi02g00092 743 Gene3D Phosphorylase Kinase; domain 1 114 209 - -
Lsi02g00092 743 PANTHER CELL DIVISION PROTEIN KINASE 534 731 - -
Lsi02g00092 743 SMART serkin_6 127 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00092 743 CDD STKc_CDK9_like 127 411 - -
Lsi02g00092 743 MobiDBLite consensus disorder prediction 431 454 - -
Lsi02g00092 743 SUPERFAMILY Protein kinase-like (PK-like) 121 417 IPR011009 -
Lsi02g00092 743 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 534 731 - -
Lsi02g00092 743 PANTHER CELL DIVISION PROTEIN KINASE 53 485 - -
Lsi02g00092 743 Pfam Protein kinase domain 127 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00092 743 MobiDBLite consensus disorder prediction 24 81 - -
Lsi02g00092 743 MobiDBLite consensus disorder prediction 59 81 - -
Lsi02g00092 743 MobiDBLite consensus disorder prediction 41 55 - -
Lsi02g00092 743 Gene3D Transferase(Phosphotransferase) domain 1 210 450 - -
Lsi02g00092 743 ProSiteProfiles Protein kinase domain profile. 127 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00092 743 ProSitePatterns Protein kinases ATP-binding region signature. 133 156 IPR017441 GO:0005524
Lsi02g00092 743 MobiDBLite consensus disorder prediction 621 644 - -
Lsi02g00092 743 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00092 Lsi-Chr2:769670 Lsi03g00150 Lsi-Chr3:2110348 4.23E-18 dispersed
Lsi02g00092 Lsi-Chr2:769670 Lsi11g00478 Lsi-Chr11:5048834 4.87E-180 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83328 PF00069 Pkinase 2.00E-68 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00092 - - csv:101220347 1286.17