Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00095 ATGGAACTTCTTGGTATTGGAGCAAATATGCAGGGTTCCGGCAACTATCCAAATTTTTATTTCAGTAGGGATATAAAAGGAGTTGTTGGTGGCTGTATATGGCCTCAAATAGGTGAGGATAAAATGGTGAACAGTGGACGTAACTCCAAAGGTTTCTTATCACCATTGTCAGCTGGTCTATATGTTGAATGTGGCCGAGAAGCACTAAAGCAGATAATGCTTAAACAAGAAGCGATTTTTAGGGATCAGGTATATCCTTGGTATGCAAGTTATCTTTTGGCTTATATCCATTATGGAATCATGTACTATTTTAGCCAATCCTGCTATATATCTGCAATGATTTATGAACTTCATCGCCTTTACCAAAGACAGAGGGAGTTTATAGCTGAGATGAAGAGGGAATCGTGTAAGCATGATATGTGCATCAGGACAACTCAGTCTGATTTTTATAAGTCTCGGGTCTCTGCATTGTGTGCTCAGGATGCTCATAACTTCCCTGTACACAGTCAATTATTTTTTCACTCAGGTGAAAAAAATACCTCATTACTTTCAAGTTTAGGGAAGAACATTCAGACAGGTTCTGACTCCCCTCTGAATGGAATCTGTTCAAAGAGTACTTATTTTTCAGAATCTAAGAGCAAGATTTTGGGAAAAAGGATGTTTGATCTTGAAGTTCCAACTGACAGCAAGTACTTGATTGGAAAAGATGAATTGACAAATGTGCCTGAAATGTCAAGCTGTCATCTCAAGAGAATGCCTGAGATTGTTCATATTAGTGATAGAAAACCTTTTCATGCCAAGTATGATTCATTATTAGAGAAAACCAAGGTCACGGTTGATTTAAATGATCCTCCTAACTTTGAGGAAGAACTGGGCTGTAGATCCGTTGATTTAGTGGATGCTCCTGGCCACAGGGAGATCATTTTCCATGATCTCTATGGAAAAGCCAATTCAAAATTTCTTGGTTTCTCAGAGCAAGATGTCCATGGAAGAAAGAATGGACTTTCTACCAATGGCTATTCTGAATTGATTAGCTTCTATGACAGAAGCAAAAGATATCAACCAGACAAAGATATTGCAAATTCAAGTCTGTCATCATCCACTACATCTGTGACAAAATCTGCACAAGGTCCCATGGGACACCATCTTTTAGATACTGAGAGTTCCAAAATGTTATTAGAAAATGCAATGGTTGCTGAAGACGATTTCTGTAGTGTTAAGAACTTGAGATCTAGCATTGGGTCTGATAGTGTAAGCCCCCTCGAAGGAAGCTTCAGTAATGGCTCCAAGTCCGAGATTGTGAAAGAAGAATCTAGCCCCTTGTTCAAGGCTTCTGCAAATTGGATGGAAGGTCAAATTGACCTCAACTTATGCATAAATGAAGAATTTTTGGCAACACCCTGTTGCTCCACTGATATGAAACTGGAGGTACCTGCAAGTCCAGGAAAGGAAAAACACTCTTCTACTACAGGAGAGTTTGGTGATAACCAAGTTGAGTCACATTTTCTAGAGTCAGTTGAAGATGATGGCAAACCATCGGAGGACCTCAATATGATTGCAGCAGAAGCCTTGGTTTCTATTTCATCATCTGTGGCTCAAAATTGTCATAAAATCACCAGTTGTCCGTCTGTTCAACCTTCATTTGAATCCTTATGCTGGTTTGCTGAAATAGTTTCTTCAATAGGAGCTGATCCAGAGAAGGCTGAAGTAGCCTTGAAATGTAAGGATACTAGTGACTCAGAGGAGCTTTTGGCAGATTGCATCGATGACTTTGAGGTCATGACGTTGAAGTTGAAAGAAACAGAAGAGGAAGGGTGTTCCTTGACAGCAAGTAACCACCAAGAGGAAGCAGTAAAAAATGTTTCTTCACCTTCATGTCAACTGGGGAAGGGGCGTGTGAGGCGGGGTAAGCGCAAGAATTTTCAGACAGAAATTCTTCCAAGTCTTGCAACTTTGTCGAGGTGCGAGGTTACAGAAGATATTCAGACAATTGGAGGGCTGATGGAAGTTGCAAGTTCTCATTCGATAGTCGGTGTAGCGAAAACTACAAGTAGAGGTAGAACAACATGGACCAGAGGGAAGAGACGGTTGTGTAATTCGTCTTCAAAAATTACAGAGACTGTTATAGGGTCAATCATGGATCAAGTAAGCAGTGACAATGAACTAGAGAACAAAGAACGAAAGGTTATAGTTTGGGGAAATATTACTCGGCGGCGGAGGGGGCAGAGATATCCAGCTTGTAATAGAAAGATTATCTTAGGACAAGTATAG 2271 40.33 MELLGIGANMQGSGNYPNFYFSRDIKGVVGGCIWPQIGEDKMVNSGRNSKGFLSPLSAGLYVECGREALKQIMLKQEAIFRDQVYPWYASYLLAYIHYGIMYYFSQSCYISAMIYELHRLYQRQREFIAEMKRESCKHDMCIRTTQSDFYKSRVSALCAQDAHNFPVHSQLFFHSGEKNTSLLSSLGKNIQTGSDSPLNGICSKSTYFSESKSKILGKRMFDLEVPTDSKYLIGKDELTNVPEMSSCHLKRMPEIVHISDRKPFHAKYDSLLEKTKVTVDLNDPPNFEEELGCRSVDLVDAPGHREIIFHDLYGKANSKFLGFSEQDVHGRKNGLSTNGYSELISFYDRSKRYQPDKDIANSSLSSSTTSVTKSAQGPMGHHLLDTESSKMLLENAMVAEDDFCSVKNLRSSIGSDSVSPLEGSFSNGSKSEIVKEESSPLFKASANWMEGQIDLNLCINEEFLATPCCSTDMKLEVPASPGKEKHSSTTGEFGDNQVESHFLESVEDDGKPSEDLNMIAAEALVSISSSVAQNCHKITSCPSVQPSFESLCWFAEIVSSIGADPEKAEVALKCKDTSDSEELLADCIDDFEVMTLKLKETEEEGCSLTASNHQEEAVKNVSSPSCQLGKGRVRRGKRKNFQTEILPSLATLSRCEVTEDIQTIGGLMEVASSHSIVGVAKTTSRGRTTWTRGKRRLCNSSSKITETVIGSIMDQVSSDNELENKERKVIVWGNITRRRRGQRYPACNRKIILGQV 756
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 798991 801600 + Lsi02G000950.1 Lsi02g00095 654837

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00095 756 Pfam Plant protein of unknown function (DUF863) 179 401 IPR008581 -
Lsi02g00095 756 Pfam Plant protein of unknown function (DUF863) 451 745 IPR008581 -
Lsi02g00095 756 MobiDBLite consensus disorder prediction 357 382 - -
Lsi02g00095 756 MobiDBLite consensus disorder prediction 357 376 - -
Lsi02g00095 756 PANTHER - 4 755 - -
Lsi02g00095 756 PANTHER GB|AAF67766.1 4 755 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00095 - - - bhj:120082969 1246.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00405 Lsi-Chr9:4266226 Lsi02g00095 Lsi-Chr2:798991 9.36E-08 transposed
Lsi02g00095 Lsi-Chr2:798991 Lsi04g00380 Lsi-Chr4:3734945 1.51E-14 wgd
Lsi02g00095 Lsi-Chr2:798991 Lsi08g00883 Lsi-Chr8:17219422 9.18E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g606 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00095 . . Cme12g01967 . . . . . . . . Sed08g2094 . . . . . . . . Bhi08g01130 Tan05g2411 . Lac10g0124 Hepe07g2485 . . Cla04g01177 Cam04g1234 Cec01g1745 Cco01g1791 Clacu04g1262 Cmu04g1241 Cre01g1535 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005746 1 3 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 2 1 1 1 1 1 4 2 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00095 Lsi_Chr02 FPKM 1.475533 0.0 0.0 0.0 0.455404 0.0 0.0 0.0 0.0 0.0