Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00101 ATGGATGATGAAGAAGAAAATGCCTTGCTTCTGAATGGAGTTGTGTGCAAAGAAGGCATTTCCTTTGCTTCACAACTTCCCTGTCGAATGGAAACTTTGACTAGTCAAAGAAGAGTGAGTTTTTCGGATTCAGGACAATATAAAAAGGATGCTTCCATCAAACCTAGAGATGGAATTCCACAGAAAAAAACAAGATCCTTCAAAGAGGATAAAAAGGAGTCCAAGAAGTTACAATGGCATTTTTTAAACCAAATGAATGAGGATTATGATTCAAGTGATATAGAGTTTGCCACTGCAGTAGCATCAGCTGCATTTGCAATTCGCTCCCAAGAAGAAACAGATTTACAATATCAGAAAAAGAAGAGAGAAAGCCAGGAAGCCTCAATAACAAAGGTTAAAAGTAGAAAAGATGACACAGTTGCATTCGCTCCCAGCATAACAAGGCGATTGTCTAACAAGGAAACCACCAATCCTGGTCAATCTTCAATAAAGAAGCCAATGGGACAGGAAAAGAAGGAATCAGTGACTGGAATTCCCATACCGCCACCGAGACGAAGCCTAGTACCAACTAGAGCAGATGTGTGGGAGAGAAATAAGATGGAGAAGATTAGTAAAAGGTATCAGAAGATAAAAGCTTCAATTCTTGCATGGGAGAATGAGAAAAAAATGCGTGCCAAACTTCAAATGGAAAAGAAAAAGGTCTTGCCTCAACTTTTGAATGTTTCCTTTATTATAAACATTTCAAGATCTATTGAAAAAAAATCTGTTGAATTGGAGCGCAAAAAGGCGCTGTTTCTGCAATATTACCAAGACAACATAGCACGAATCGACCAGATCGCGGGGGGAGCAAAGGCACAGCTGGAAGAGAAGAGGAAAAAGGAAGAGATTAAAGCAAGAGAAACAGCAAACAGAATCAGATCAACTGGACGACTTCCTGTGACTTGTTTCTGCTTTCAGTATCACTAA 966 39.34 MDDEEENALLLNGVVCKEGISFASQLPCRMETLTSQRRVSFSDSGQYKKDASIKPRDGIPQKKTRSFKEDKKESKKLQWHFLNQMNEDYDSSDIEFATAVASAAFAIRSQEETDLQYQKKKRESQEASITKVKSRKDDTVAFAPSITRRLSNKETTNPGQSSIKKPMGQEKKESVTGIPIPPPRRSLVPTRADVWERNKMEKISKRYQKIKASILAWENEKKMRAKLQMEKKKVLPQLLNVSFIINISRSIEKKSVELERKKALFLQYYQDNIARIDQIAGGAKAQLEEKRKKEEIKARETANRIRSTGRLPVTCFCFQYH 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 829709 831837 + Lsi02G001010.1 Lsi02g00101 654843

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00101 321 MobiDBLite consensus disorder prediction 49 73 - -
Lsi02g00101 321 Coils Coil 200 220 - -
Lsi02g00101 321 PANTHER OS02G0116800 PROTEIN 50 234 - -
Lsi02g00101 321 Pfam Remorin, C-terminal region 190 313 IPR005516 -
Lsi02g00101 321 PANTHER GB|AAD39278.1 248 317 - -
Lsi02g00101 321 PANTHER GB|AAD39278.1 50 234 - -
Lsi02g00101 321 MobiDBLite consensus disorder prediction 147 187 - -
Lsi02g00101 321 MobiDBLite consensus disorder prediction 113 135 - -
Lsi02g00101 321 MobiDBLite consensus disorder prediction 147 164 - -
Lsi02g00101 321 MobiDBLite consensus disorder prediction 35 73 - -
Lsi02g00101 321 MobiDBLite consensus disorder prediction 112 135 - -
Lsi02g00101 321 PANTHER OS02G0116800 PROTEIN 248 317 - -
Lsi02g00101 321 Coils Coil 284 304 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00101 - - - cmo:103490088 436.032
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00101 Lsi-Chr2:829709 Lsi04g00377 Lsi-Chr4:3723900 4.42E-14 dispersed
Lsi02g00101 Lsi-Chr2:829709 Lsi05g02030 Lsi-Chr5:27291946 4.84E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g622 . . . . Bpe12g00529 . . . Cmo13g00940 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00101 Csa01g00580 Chy12g01516 Cme12g01962 . . . . . . . . Sed08g2099 . . Cma13g00913 . Car13g00753 . . . Bhi08g01121 Tan05g2402 Cmetu12g1770 . . . . Cla04g01173 Cam04g1230 Cec01g1741 Cco01g1787 Clacu04g1257 Cmu04g1236 Cre01g1531 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007325 0 1 0 0 1 1 2 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 0 1 1 1 1 5 4 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00101 Lsi_Chr02 FPKM 6.350427 6.592291 3.284905 4.274442 4.430098 3.783262 4.455248 3.328409 2.700447 4.367508