Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00102 ATGAGTCATTGTGTGGTTCCAAAATGGAATCTGAGCCACGAAAGACAAGAGCAAGTCGAAGAAGAGGAAGAAAAAAGATCCTTTCACGTGCCTGCTGAGAAGAATCACCACAGTACCACCACTAAACCACTTGTCCCCTTCTACCAGCAAATGGCAAAGCAAGGAGTTACAGAACTAACTTGGCAAAATGGGCAATTGGCTCTGCATGGGATTGATGGGCTGCAGCCAACAGTCCCACCAAAGCCCACATGGAACCGAGCCAATGACACGTTGGAGTCCGTAGTCAATCAAGCCAAACTCCAAACCCAAGGCCCAAATCTGATCCAGCAAAGCGAGCCACTGGTCCATACTGGCCGCACCCTCACATCCTCTGCCGCCAATGGGAAATGGGTTGAAAGGGGCAACCAAGAACCGCCGGCGAGAAAAAGAACACGATCGACTTCCGATTATGCTGGGAAAAATGTCAGCACAAGCAATAATAACAACAACAGCAACACTATGCAAGTGGACCATGGCGATCACAGTGTGTGTGGAAGTGCGAGTGCAGCGTTTTGTAGGGATAATGAGACTACTTTGATGACATGGGCATCCTTTGATTCTCCTCGAAGCTTGAAAACCAAATCCATTGATGAAGATTCTGCTTGTCATGTTGAATCGGAAAATCAAGAGGAAGAACAAGATACGAAGCGTGTAGCGAATCGCTCTCATTCAGCTAGACGAAGTCGAGCAGCTGCTGTACATAATCAATCAGAACGGAGGAGGAGAGACAGAATTAATGAGAAGATGAAAGCCCTGCAAAAGCAGACTGATAAAGCTTCAATGTTGGATGAGGTGATTGAATACTTGAAGCAACTTCAAGCACAAGTTCAGTTTATGAGTGTGAGGAGTATGCAACAGATGATAATGCCTATAGGAATGCAGCAACAACTTCAAATGTCGCTCCTAGCGCGTATGGGCATGGGGGTCGGTCTAGGCATGGGAATGGGGATGCTCGACATGAGCGGTATGGCACGTTCAGCCCCGCAGACGCTTCCTCCTCTCATTCATCCTACATCAGTTCCCGCTACACCTCCTGCATTCGTTCCGCCCCACTTCTTGTTACCCCCTGCAATTCCAAGGCAGGATCCAACACAAACCAAGCCTGCCACTAATGGCTCTGTTGATCCATTTTGTGCCTTTCTAGCACAAACAATGAATATGGATATCTACAACAAAATGGCAGCTTTCTATCGCCAACAAGTTAATCAGACAACAAATGCAATGAGCAGCCCAACACAGTCAAACAATGTGCAAGGAAATTAA 1302 47.08 MSHCVVPKWNLSHERQEQVEEEEEKRSFHVPAEKNHHSTTTKPLVPFYQQMAKQGVTELTWQNGQLALHGIDGLQPTVPPKPTWNRANDTLESVVNQAKLQTQGPNLIQQSEPLVHTGRTLTSSAANGKWVERGNQEPPARKRTRSTSDYAGKNVSTSNNNNNSNTMQVDHGDHSVCGSASAAFCRDNETTLMTWASFDSPRSLKTKSIDEDSACHVESENQEEEQDTKRVANRSHSARRSRAAAVHNQSERRRRDRINEKMKALQKQTDKASMLDEVIEYLKQLQAQVQFMSVRSMQQMIMPIGMQQQLQMSLLARMGMGVGLGMGMGMLDMSGMARSAPQTLPPLIHPTSVPATPPAFVPPHFLLPPAIPRQDPTQTKPATNGSVDPFCAFLAQTMNMDIYNKMAAFYRQQVNQTTNAMSSPTQSNNVQGN 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 834811 838796 + Lsi02G001020.1 Lsi02g00102 654844

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00102 433 MobiDBLite consensus disorder prediction 1 40 - -
Lsi02g00102 433 MobiDBLite consensus disorder prediction 216 234 - -
Lsi02g00102 433 PANTHER TRANSCRIPTION FACTOR PIF7 3 428 - -
Lsi02g00102 433 MobiDBLite consensus disorder prediction 216 256 - -
Lsi02g00102 433 Gene3D - 237 296 IPR036638 GO:0046983
Lsi02g00102 433 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 240 297 IPR036638 GO:0046983
Lsi02g00102 433 SMART finulus 248 291 IPR011598 GO:0046983
Lsi02g00102 433 Coils Coil 248 268 - -
Lsi02g00102 433 MobiDBLite consensus disorder prediction 13 36 - -
Lsi02g00102 433 MobiDBLite consensus disorder prediction 123 169 - -
Lsi02g00102 433 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 3 428 IPR031066 -
Lsi02g00102 433 MobiDBLite consensus disorder prediction 149 169 - -
Lsi02g00102 433 Pfam Helix-loop-helix DNA-binding domain 246 286 IPR011598 GO:0046983
Lsi02g00102 433 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 242 300 IPR011598 GO:0046983
Lsi02g00102 433 CDD bHLH_AtPIF_like 242 297 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00102 - - - cmo:103489941 769.229
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00102 Lsi-Chr2:834811 Lsi11g00667 Lsi-Chr11:7031505 4.94E-24 dispersed
Lsi09g01635 Lsi-Chr9:24665950 Lsi02g00102 Lsi-Chr2:834811 8.12E-06 dispersed
Lsi02g00102 Lsi-Chr2:834811 Lsi02g02044 Lsi-Chr2:26581753 1.46E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g623 . . . Bda15g00616 . . . Bma12g00978 . . . . Car10g00201 . . . . . . . . . . . . . . . . . . . . . . Lsi02g00102 Csa01g00581 Chy12g01515 Cme12g01961 . Blo15g00325 . . Bpe07g00768 . . . . . . . . . . . Cpe18g00775 Bhi08g01118 . . . . . . Cla04g01172 Cam04g1229 Cec01g1740 Cco01g1786 Clacu04g1256 Cmu04g1235 Cre01g1530 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007472 1 3 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24733 PF00010 HLH 0.00011 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00102 Lsi_Chr02 FPKM 3.98329 4.103483 5.086089 4.859356 11.140334 10.902164 12.382867 11.54028 10.278883 11.877378