Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00109 ATGGCACATATTTGTTTTAACACTCACAAAATTGTAATGATTCCCTATCCCTATCCGGAAAAGGTTTTACATCGCTGCGTGGAGGCCATTATTACTGCGGGAAGCCGTGTCAAAATTCTAATGGTTAAAAAGAAAATAAAAAAGAAGAAGAAGAAACCCAGATTCCAGTGGCCAACCCTCGTAACATCGGAGCCCTTGGACCTATTCGGAGTTGCAGTTCTTTTGTTTTCCGGCGAACCTACAGAATCACCATCAGGTACACAAAGACGACGATCACAAGGCGACATGGGGGAGGAGAAGAGGCACCAGATGATGCAGAATCTCTTTGGAGATCAATCCGAGGAGGAAGAAGAGATTGATTCCGAGCACGAGTCTAATCCGCAACCCAATTATGCCTCTGATGAAGGAGAAGGAGGGGCGGAGCCTGAAGGTGAAGGTGAAGTGGAGGGACATGGGGAGGTGGAAATCGAGAGTGAAGGTGAGTTGCAGGATGTTGATCCGGATCCTGGAGAAAGTGAGGGTGAAAGGGATCAAAGTTCTCAAGAAGTAGACGTGGGTCACCATAGAGAAGAAGAAAGTGAAGGGAAAGAGGTGGATAGCGATGATAGGGAAGAATATGGTCAAAGAGTGGTAACAAGCAGGAGGCATGATTTAGTTGAAAGTGAATCCGAGAGGTCTGAAGAAAATCACTATATCGACAATGAAGATGAAGAGGTGGATCAAACTAGGAGTCCAAGGGAGGAGAGGGATAACAGTTCACATCCAGTTGCTGAAATTCGCGACGTATTTGGTGACTCTGATGAGGAAGAGGAGGCAGAATATGCAGTTGAAAATGATATTAAGCAAGATTCAGCTAGGTCACCTATGGAAGAGGAGGGGAGCTTTGAGAAGAGTCCAAGACCAGATGATATAATTCCTGATGAAGATGCTCGGTATGAGTCAGATGCTCGTTATGAATCAGAAGAGGAAAATTTCGAGGTAAAACATAAAGAGAAGCCAGTTGGGCCTCCATTGGAGCTGGAGATTCCATTACGTCCTCCTCCTGCTCGCCCAGAAAAGATGAACATGATAAAAGTTTCCAATATTATGGGCATTGATCCAAAACCATTTGATCCCAAAACATATGTGGAAGAGGATATATTTGTGACAGACGAATCTGGAGCTAACAAACGCATACGCTTGGAAAATAACATTGTGCGCTGGAGGACAGTTAGGAAACCTGATGGCACAACAAATTATGAAAGCAATGCACGTTTTGTGAGGTGGTCGGATGGCAGCTTGCAACTGTTAATTGGGAATGAAGTGCTCGACATAAATGTGCAAGATGCAAAGCATGATCAAGCACACTTGTTTCTTCGGCATGGGAAGGTGATATTATGGTTCTGTTACTTTATTTGTCTTGTTAAACTGCTTGACCTCAAGGCTCTATATCTACTCATACCAATTTCTGGATTTGAGACTGGGAATTGTCCTCAAGGAATTTTGCAATCACAAGGTAGGCTTATGAGGAAGATGAGGTTCATTCCATCATCCCTGACATCAAATTCTCACCGCTTATTAACTGCTTTGGTTGACTCACGACATAAGAAGGTGTATAAGGTTAAGAATTGCATAACGGACATTGATCCTGAAAGAGAAAAGGAGGAAAAAGAAAGGGCTGAAAGTCAAACAATCCGGGCAAACGTGCTTCTTAATCGGAAAAAGGAAAAGGTTAACAAGAAATATACTCCTGTCATCGATAGAAGGCGCCAACTATCACCTGGGTTCTTGGAAGATGCCCTTGAGGAGGAAGATGAAACAGATTATATTGATGCACGTCGCTCCCGTCGCCGCTTTGAGGAAGATTTGGAAGCGGAAGCTCGAGCAGAAAAACGTATTATGAATGCAAAGAAGGGAAGTAGAGACGTCCCCCGGAAGCCATCCTTTCCCGCGTCTAAATCATCTGGGCGTCCTGTGGATTTCTCAGACAGTGACAGGGAAGAGTCTGAGTACGAAAGTGAAGGAGAAGATGATGCTCCTGGGAGAGTTGAAGAGCCAGAGCAGGAGTATGAGGAAGAGGGGGAAGAAGATGATGAGCGTGATGAAGAGGCAGAAGTTAATGAAGTTTCAGATGTGGATGAAGAGGCTGAGAAAACGGCGGAAAGCCCCAATCCTCGGATGTTGCAAGAAAACCTTCCCAAACATTACAGGTTGAATAATTACAATAGGATTCCAATTTATACATCTTTGAAGGAGCCCAAACATAAGGTTAGAGATTATGGGGGCAGTCACAAGCGCAAGGGGATTGAGTCTGATGAGGAGTCTCCTCCAAGAAAGGTTGCAACCCATCGTAGGATGGCAGTTGTTTATGACAGCGACGATGATTTCATAACCAGCAACGTCACAATTTCTAAAGTTGAAAATGTTTCAGCCTCCGACCATTCGGGGCATGAAAAGGGTCACTGCGAGGCCAAGATTAAAACTGTGAGAGCTAGACGAACTGCAGAACAAGTGGGGCTTAAAGTATTCACCAGCAGAACTGCGGCAGATCCAAAAGGTTATGTTAATGAGGCTCTA 2556 44.48 MAHICFNTHKIVMIPYPYPEKVLHRCVEAIITAGSRVKILMVKKKIKKKKKKPRFQWPTLVTSEPLDLFGVAVLLFSGEPTESPSGTQRRRSQGDMGEEKRHQMMQNLFGDQSEEEEEIDSEHESNPQPNYASDEGEGGAEPEGEGEVEGHGEVEIESEGELQDVDPDPGESEGERDQSSQEVDVGHHREEESEGKEVDSDDREEYGQRVVTSRRHDLVESESERSEENHYIDNEDEEVDQTRSPREERDNSSHPVAEIRDVFGDSDEEEEAEYAVENDIKQDSARSPMEEEGSFEKSPRPDDIIPDEDARYESDARYESEEENFEVKHKEKPVGPPLELEIPLRPPPARPEKMNMIKVSNIMGIDPKPFDPKTYVEEDIFVTDESGANKRIRLENNIVRWRTVRKPDGTTNYESNARFVRWSDGSLQLLIGNEVLDINVQDAKHDQAHLFLRHGKVILWFCYFICLVKLLDLKALYLLIPISGFETGNCPQGILQSQGRLMRKMRFIPSSLTSNSHRLLTALVDSRHKKVYKVKNCITDIDPEREKEEKERAESQTIRANVLLNRKKEKVNKKYTPVIDRRRQLSPGFLEDALEEEDETDYIDARRSRRRFEEDLEAEARAEKRIMNAKKGSRDVPRKPSFPASKSSGRPVDFSDSDREESEYESEGEDDAPGRVEEPEQEYEEEGEEDDERDEEAEVNEVSDVDEEAEKTAESPNPRMLQENLPKHYRLNNYNRIPIYTSLKEPKHKVRDYGGSHKRKGIESDEESPPRKVATHRRMAVVYDSDDDFITSNVTISKVENVSASDHSGHEKGHCEAKIKTVRARRTAEQVGLKVFTSRTAADPKGYVNEAL 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 891803 899906 + Lsi02G001090.1 Lsi02g00109 654851

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00109 852 MobiDBLite consensus disorder prediction 319 336 - -
Lsi02g00109 852 MobiDBLite consensus disorder prediction 78 307 - -
Lsi02g00109 852 MobiDBLite consensus disorder prediction 624 727 - -
Lsi02g00109 852 MobiDBLite consensus disorder prediction 319 351 - -
Lsi02g00109 852 MobiDBLite consensus disorder prediction 658 708 - -
Lsi02g00109 852 MobiDBLite consensus disorder prediction 172 262 - -
Lsi02g00109 852 PANTHER BNAANNG06810D PROTEIN 492 701 - -
Lsi02g00109 852 PANTHER BNAANNG06810D PROTEIN 96 459 - -
Lsi02g00109 852 PANTHER BNAANNG06810D PROTEIN 752 788 - -
Lsi02g00109 852 PANTHER LEO1 PROTEIN 492 701 IPR007149 GO:0006368|GO:0016570|GO:0016593
Lsi02g00109 852 PANTHER LEO1 PROTEIN 752 788 IPR007149 GO:0006368|GO:0016570|GO:0016593
Lsi02g00109 852 MobiDBLite consensus disorder prediction 277 307 - -
Lsi02g00109 852 MobiDBLite consensus disorder prediction 144 158 - -
Lsi02g00109 852 PANTHER LEO1 PROTEIN 96 459 IPR007149 GO:0006368|GO:0016570|GO:0016593
Lsi02g00109 852 Pfam Leo1-like protein 356 551 IPR007149 GO:0006368|GO:0016570|GO:0016593
Lsi02g00109 852 MobiDBLite consensus disorder prediction 748 775 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00109 K15177 LEO1; RNA polymerase-associated protein LEO1 - csv:101221752 1024.23
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g641 . Blo16g00172 . . . Bpe13g00308 Bma06g00156 . Cmo13g01129 . . . . . . Cpe20g00067 . . . . . . . . . . . . . . . Cone2ag0815 Cone16ag0199 . . Lsi02g00109 . Chy12g01508 Cme12g01953 . . Bda11g01718 . . . . . Sed08g2112 . . Cma13g01081 . Car13g00918 . . . Bhi08g01102 Tan05g2374 Cmetu12g0892 . Hepe07g2474 . . Cla04g01164 Cam04g1222 Cec01g1733 Cco01g1779 Clacu04g1249 Cmu04g1228 Cre01g1524 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005345 1 2 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 0 1 1 1 1 1 1 5 2 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00109 Lsi_Chr02 FPKM 2.38913 2.692873 1.267976 1.036935 1.788583 1.582132 1.817026 1.080989 1.555327 1.819598