Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00117 ATGGCGGATCAGTTCTGTTACATTTGTGGTGATATTGGTTATGCTGAGCTGATTGTAACCTGCACTAAATGCAAAGTAGTTCGTGAACATCTTCTGTCGTCAGTTGAATCACGAATGGCGTTGCATATTCTTCAGTTGGTGAATACTACGATCCAACACTCGTTGAGTTTCAATTATTGCATGCCCAATAAAAGTCCCGATGTCCCTAAATCCTGGCTTTGTGGTAATTGTACATTGGATGAGGCCAAAAGTCCTGATGATTCAGGATTGCAGGTTCAACCTAAAATGCTAAGACATGCTAAAACTAGTAAGGTGAAGTTCTTACCTGCCGAAGAAGTAATAAAGCTATCATCGGGAGGGATGAATGGACCTTCAAAGTTGAACACAGCTTTTACACTGCATAGATCATCTAAGTCCAGGAAAGTCTTTGAAAGCAATATTCCCCGGCCACTTTTCCAAGCATCAAAAGAATCTCAAGAACGAACTTCTGCTATGATGCCTCCAAATACATGTGGTGTGAAGAAACAGGCATTAGCTACCTGTTTACCTCCAATGCCACTAGGCCCAGTACAAACTTTTAATAAGGTGAAGGTTACAGAAACACCTGCTTGCACTTCTTCTGTGTCAAGGCATGGTTTACCTGTCACAAATACAGCTAACATTAATGACATCACAGGAAATGAAGTTCCTTCACCTTCCACTAAGTTGGATGATACACACAAACAAAGGAAGGATGCTTCGTTTACACATGAAATACACGCAGACCATGATAACACAGGAAAACAAGTTCCTTCGCCTTCCGCTAAGTTGGATGATACACAAAAACAAAGGAAGGATGCTTTGATGATACAAGAAATACTTACATACCGTGACTATCTCCCATCATTATATGCCTCTTGGAAGGGAGGCTTCCAGTTTATTGATACACGTATGGCGGGTGAATTTTATGATGGTTTCCTGGCAAAGCCTCCATGTGTGGTATGTGGTCGAGTTTATGAATTGACACGGAAGATTCCTCCCATTCTTCAAGTGAAGTTGCTTAGTCGTTCTGATATTTGGGACGATCTATTTCACGATGAATGTCCGGATCTTGCTGACATTGCCTTGTACTTCTCTTTGGGCAATAATGAAAGGTCTGTTATGATTTTGGATTTAATGGGTACAATTCCTCTTTATCACATGTGTGCTGATCTTTCTGCAGATGTTGTTAATATGTTAAATGCCGAATACCTCCTTTTCGGAGTCTTTCGCGAGATAGAAGACGACCAATCTCCTTTTCCTATGTTAGAATATGGTCCTGCAGTTTCTTCAGTAGAATGTGATTCCAGAGTTCCCCTGCTGGAATTCACGCCCAACGCACATGGAAAGCCAGATGAAGACAATGCTGTTAAAAGGGAAATTGAAATCAAGGGTGGAAACACTGCTGGAAAGTCTCCAACTGCAAACGATGTAGACTCTACCATTCAGCGATTACTATTAGAATTTGGGTCACAGGAACCCAGGGAGTCCAATGTCTATGCATTAAATATGAATGAAATAAAAGATCAGGAACCTGCTCCAATCACAGCAGCGACTAGCTCGTATTCTCTTTCCCTGTCAAAAGTAAAGACTGAACCTTCAGTTATTAAAGCGGAAGGAAATGATGGAAACACATTCTTGCAAACGGCGCATTGCTCGAGAATGGCGCCAACATTTAGTATTGATGGCTCTCAAAACATGAGTGGTTTAACTGAACAAGATGCTCCCAAGAGAGGATTAAAAAGGAACGTCGGTAGTTCTGATGTGAGTGAAGCAACTTGGCTGTTTAAGCCATTCAAGGGCCAGGGGTACAGCATTGCCCTTTTCTTTTTGGAAGCAATGGCCATGGCAGCTCTGAGACGTGAAGGGAGGCGGCTCGCTACTGTGATCTCTCCTCAACCAATCACCGCTCTCCGGGAACAAGCTCCTCTTGGTGTTCGCTCCATCTCCACTCAAGTGGTTAGAAATCGAATGAAGAGTGTGAAAAATATCCAGAAAATTACAAAGGCAATGAAGATGGTTGCAGCCTCAAAGCTGCGGGCAATTCAAGTGCGTGCTGAAAATTCTCGTGGCCTCTGGCAACCATTTACTGCACTTCTTGGGGATAGTCCAAGTGTTGATGTAAAGAAGAATGTCATTGTTACCATTTCTTCTGACAAGGGTCTTTGTGGTGGAATTAATTCTACCTCAGTCAAGATAAGCAAGGCTCTGCGCAAGATAAATTCTGGTCCTGAAAAGGAAACAAAATATGTTGTATTGGGAGAGAAGGCAAAGGCTCAGTTAATACGTGACTCCAAGAAAGACATAGAAGTCATCTTCACTGAACTGCAGAAGAATCCTTTGAATTATACTCAGGTCTCTGTCTTAGCTGATGACATTCTAAAGAACGTAGAATATGATGCTCTGAGGATTGTTTTCAACAAGTTCCAGTCAGTTGTCTCATTTTTGCCTACAACATCTACCGTGCTGTCTCCTGAGATTGTTGAAAGAGAGGCAGAATCTGGGGGAAGGCTTGGGGACCTGGACTCATATGAGATTGAAGGCGGTGAGACAAAGGCTGAGATTCTCCAAAATCTAGCAGAGTTCCAGTTTTCTTGTGTACTTTTCAATGCCGTATTGGAAAATGCTTGCAGTGAACAAGGTGCAAGGATGTCTGCAATGGACAGCTCAAGCAGAAACGCTGGGGAAATGCTTGATCGGCTCACATTAACTTATAACAGCAAAGGGAGAGCAGAAATGGATTTGTGGATTGTTGCAGCAGCTACTGGTGCTGGATACGTAGCTAAGTACTGGAAGAATCAATCAAAGGATGGGGATTATTCTTTATCACAGTTATCCTTTGGGGAATCCAATTTGGTGAGTCCTCAGTATTCAAATCATTTGCTTAACAAATCTTCACAAAGGAAGAAACTATATGAAGATGTTTTTGGACATGGAAGAATGGAAGAAACATCTTCAGTTGCAGAGTTGGAACTTTTTGGAAGTCACCAAGATTCCAATGAGCTGCCTACACCAAATATGCCTTTGAAATCCTGGACCAATGAGAATTCTAAAGAACACATTGGAGAAAGCAGCAAAAGCAATAACATTGGAACCTTAGTTTGTAGTTCTTCTGTCTCTTCAAGAAACAGAAGCACAGCTAAGGCTAGATTCTCACATGGGGTTCTTATTAAACCTCTGAGTTTTGTAGAAGATTGTCTTCTAGCTCAGGAGAGTTTTTTAAGTCCATGTATTGCTGTGGAAATGGAGGAAAAGAAGCTCTCCAAGGGAGCCCATTTAAATGCTAGTGAAAGTGTATATGGGGTTTCTCAACTGCCATTTGGGCCTTTAAAGATCTCTGATGTAGTTAGTAATAAGACAGGAAAGAAATGGGAAAGAAAGTCAAGAAGTTCCAGCAAAATGGCTATCATGGAACACTTTGCTTCTAAAGGTGCCCCGGGTGAATCTTTTGTATTATATCTTGGATTCTTCATTGGTGTAATCTATTCTTTCATATCCAAAAACAGGGAAGTTCACACGTTGAAAGAATTGTTAAAGCAGACTGAGTATTTGGTTCAAGATCTTCAAGAGGAACTTGAAATGAAGGACTCATTGAAGCTGAAAGAGCTCAGTAATGATAACTGTGAATCATACACTTATAGTAATGCCTTCTCTGAGAAAACAGGGGATGAATCTTCTCCAAAACATATCATGGATTACACATTAAACTTCAATACTAAAGAACTATATGAACATAAGACAGAGGAGAGTTCTGAATCAATGAGCAGAATCGAAGCCGAACTGGAAGCGGAACTCGAGAGGTTAGGATTAAATGTAAGCACCGATGACACGGCGAGATTTCCCGGCAACGACGAGGAGCTTGATCCAGAATTTGAAGAAGATTTTGCTGAAGGTGAGTTGAGGAATGAGATGATTAGTGAACAAAGTTCTGGTTGGACCAAGCAAAATGAAGAGGCAAGCGACTCAACAGTTCATTCTGGTAATTATACAGTGTCACCAAGGGAATTGAGCTTGCGTTTACATGATGTTATTCAGTCGAGACTTGAAGCACGCATCAAAGAGCTTGAGAATGCCCTTCAAAATAACCACAAGAAGCAGCAGAAAATTGATACACAATATAGGAGTTGTTCTTGGCTTGAATTGGCAGATGGTGAATTGGAGTCTACTTCTAATACAGAAGATGAAAGCAAAATTGCTAACCTCTGA 4224 41.31 MADQFCYICGDIGYAELIVTCTKCKVVREHLLSSVESRMALHILQLVNTTIQHSLSFNYCMPNKSPDVPKSWLCGNCTLDEAKSPDDSGLQVQPKMLRHAKTSKVKFLPAEEVIKLSSGGMNGPSKLNTAFTLHRSSKSRKVFESNIPRPLFQASKESQERTSAMMPPNTCGVKKQALATCLPPMPLGPVQTFNKVKVTETPACTSSVSRHGLPVTNTANINDITGNEVPSPSTKLDDTHKQRKDASFTHEIHADHDNTGKQVPSPSAKLDDTQKQRKDALMIQEILTYRDYLPSLYASWKGGFQFIDTRMAGEFYDGFLAKPPCVVCGRVYELTRKIPPILQVKLLSRSDIWDDLFHDECPDLADIALYFSLGNNERSVMILDLMGTIPLYHMCADLSADVVNMLNAEYLLFGVFREIEDDQSPFPMLEYGPAVSSVECDSRVPLLEFTPNAHGKPDEDNAVKREIEIKGGNTAGKSPTANDVDSTIQRLLLEFGSQEPRESNVYALNMNEIKDQEPAPITAATSSYSLSLSKVKTEPSVIKAEGNDGNTFLQTAHCSRMAPTFSIDGSQNMSGLTEQDAPKRGLKRNVGSSDVSEATWLFKPFKGQGYSIALFFLEAMAMAALRREGRRLATVISPQPITALREQAPLGVRSISTQVVRNRMKSVKNIQKITKAMKMVAASKLRAIQVRAENSRGLWQPFTALLGDSPSVDVKKNVIVTISSDKGLCGGINSTSVKISKALRKINSGPEKETKYVVLGEKAKAQLIRDSKKDIEVIFTELQKNPLNYTQVSVLADDILKNVEYDALRIVFNKFQSVVSFLPTTSTVLSPEIVEREAESGGRLGDLDSYEIEGGETKAEILQNLAEFQFSCVLFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNSKGRAEMDLWIVAAATGAGYVAKYWKNQSKDGDYSLSQLSFGESNLVSPQYSNHLLNKSSQRKKLYEDVFGHGRMEETSSVAELELFGSHQDSNELPTPNMPLKSWTNENSKEHIGESSKSNNIGTLVCSSSVSSRNRSTAKARFSHGVLIKPLSFVEDCLLAQESFLSPCIAVEMEEKKLSKGAHLNASESVYGVSQLPFGPLKISDVVSNKTGKKWERKSRSSSKMAIMEHFASKGAPGESFVLYLGFFIGVIYSFISKNREVHTLKELLKQTEYLVQDLQEELEMKDSLKLKELSNDNCESYTYSNAFSEKTGDESSPKHIMDYTLNFNTKELYEHKTEESSESMSRIEAELEAELERLGLNVSTDDTARFPGNDEELDPEFEEDFAEGELRNEMISEQSSGWTKQNEEASDSTVHSGNYTVSPRELSLRLHDVIQSRLEARIKELENALQNNHKKQQKIDTQYRSCSWLELADGELESTSNTEDESKIANL 1407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 957772 977324 + Lsi02G001170.1 Lsi02g00117 654859

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00117 1407 PANTHER ATP SYNTHASE GAMMA CHAIN 620 929 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lsi02g00117 1407 MobiDBLite consensus disorder prediction 234 258 - -
Lsi02g00117 1407 CDD F1-ATPase_gamma 656 912 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lsi02g00117 1407 Gene3D - 680 892 - -
Lsi02g00117 1407 MobiDBLite consensus disorder prediction 1313 1335 - -
Lsi02g00117 1407 Gene3D ATP synthase, gamma subunit, helix hairpin domain 660 913 - -
Lsi02g00117 1407 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 657 913 IPR035968 GO:0015986|GO:0045261|GO:0046933
Lsi02g00117 1407 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 656 914 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lsi02g00117 1407 PRINTS ATP synthase gamma subunit signature 806 823 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lsi02g00117 1407 PRINTS ATP synthase gamma subunit signature 714 733 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lsi02g00117 1407 PRINTS ATP synthase gamma subunit signature 880 899 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lsi02g00117 1407 Coils Coil 1351 1374 - -
Lsi02g00117 1407 Coils Coil 1177 1197 - -
Lsi02g00117 1407 PANTHER BNAA05G10580D PROTEIN 620 929 - -
Lsi02g00117 1407 MobiDBLite consensus disorder prediction 215 275 - -
Lsi02g00117 1407 MobiDBLite consensus disorder prediction 215 233 - -
Lsi02g00117 1407 Pfam ATP synthase 658 914 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lsi02g00117 1407 MobiDBLite consensus disorder prediction 569 589 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00117 K02136 ATPeF1G, ATP5C1, ATP3; F-type H+-transporting ATPase subunit gamma - cpep:111783448 749.199
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00426 Lsi-Chr1:3608956 Lsi02g00117 Lsi-Chr2:957772 1.56E-17 dispersed
Lsi02g00117 Lsi-Chr2:957772 Lsi05g00596 Lsi-Chr5:7388893 3.92E-20 dispersed
Lsi02g01994 Lsi-Chr2:25923755 Lsi02g00117 Lsi-Chr2:957772 8.14E-07 transposed
Lsi02g00117 Lsi-Chr2:957772 Lsi06g01413 Lsi-Chr6:24695337 3.28E-76 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g654 . . Bda06g00524 Bda15g00621 Bpe12g00525 . . Bma12g00967 Cmo13g01124 . . . . . . Cpe20g00071 . . . . . . . . . . . . . . . Cone2ag0804 . . . Lsi02g00117 Csa01g00596 Chy12g01502 Cme12g01946 . Blo15g00334 . . . . . . Sed01g2299 . . Cma13g01077 . Car13g00913 . . . Bhi08g01087 Tan05g2365 Cmetu12g0105 Lac10g0145 Hepe07g2467 . . Cla04g01157 Cam04g1215 Cec01g1726 Cco01g1771 Clacu04g1242 Cmu04g1221 Cre01g1517 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008823 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00117 Lsi_Chr02 FPKM 16.594877 17.455975 17.163147 17.643618 31.058098 27.209316 33.686485 26.308056 27.930052 28.513956