Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00119 ATGGGGGATTGTGAATCAATTATACCAACATCTGAAGGAGAGCAACATATCCTAACTTCATTTCAACACCTAGTCAAGTTCTTAAGGACAAGTCAAACCGTGAATGATGAGTTGAAAAGGCTCCTTGCCGATCTCGATTCTCATTTGACTTCCATGAATCTGTATAGTCATTTAGAGGTTGGGAAGTTGAGTGAGTTAGAAACAAGGTTCAAATCTGCTGAGGAGAAGATTAGGAGGTGGGAATCTAACAAATCCATGATATGGGATTCTGGTCCTAGGGAAGCTTGTGAATATATGAAGGCTGTTGATGAAATTCATAAAGTTCAGGAAGGTCTAAGAAGTTTGTCTGCAAATGACGGTCGAAAGCAAAATGAACTTCTTTTCCAAGCCGACTCTGTCGTACAGATCGCAATGGTAAGGCTAGAGCAGGAGCTAGTCCACATTCTTGCTCAACACAAACTATATTTTGAGCCTGACTACGTTCCCCTCCAGTCTGGTGGGTATGATGTTGTCTATAACGAGTCATTTGTTTCAGCTGAGGACAGTTTGGAGGAGGAAACTTCCCACACGGAGAGTGTTCCTGCTGTATATGTTGTAAACTTGGTCCATCCATACGTGATTCCTCATCTTAAATCCATCGCAAATGTTATGTTTGCTTCAAATTATATTCAGGAATTCTGCCTGGCTTTTGTTAAAATGCGGAAAGATGCGTTTAATGAGTATCTGTTCATTCTCGAAATGGAGAAGTATAGCATCGAAGATTTGCTGACCATGGAATGGAAAGTCTTAAACATGAAAATCAAGAAATGGGTTTGGCTTATTAAAATTGTTATTAGAGTCTACCTTACTAGTGAGCAAAGACTCTGTAACGATATATTTGAAGGCATTGGATCTTATAGTGCAGTCTGCTTTACTGAGATTTCAGCAACTTCTATGCTCCGCCTGTTGAATTTTGGCGAAGCCGTAGCTATGGAACCCCATCGACCAGAAAAGCTGTTTCATTTGCTAGACATGTATGAGGTCCTAGAAAATCTTCTTGGGTATATAGATGCATTATTTTCAGAAGAAACAGAAAAGGGTTCTTTTCTCAAAGTTGAGTTCCATGATCTTTTCAAGAAATTAGGTGATTCTGCAAGGGCTACGTTTGTGAATTTTGGAAGTTTCATTGCATGTTCCATATCAACAAACCCTTTTCCTGGTGGTGGTGTTCATCATCTAACGAAGTATGTTATGAACTACATTAAGACCCTTACTGTTTACAGAGACTCGCTTGTTTTCCTTCTCCAAAATGAAGCAGCAGATGGTTTAAGTCATGCTTCTGAGCTGCAGAACGAAATCAATAGCATGCCTTGCCCAATGGCTTACCAGCTTCAGTCAATCACTTCACATTTGATATCCAATCTGAATAACAAATCCAGGTTGTACAAGGATGATGCTCTAGGACATATTTTTTTAATGAATAACATTCATTATATGGTTCAAAAGGTTGAAAACTCTGAACTCAGATCCTTACTTGGAAGTGAGTGGATGCGAAAACATATAAGAATGTTTCAAAACCACGCAACTATCTATATGAGAGTTACCTGGCAGTCGGTTCTTTCTCTGCTCAGGCTTGATGGCGATGGATTGACAACTCCGAAGGCAGTCTTTAAAGAAAAGTACAGGGCCTTCAATGCAGCCTTTGAGGAGATATATAAGAACCAAACTGGTTGGAATGTCCCAGATCCTCAACTACGTGATGACTTGCTTATTCAAACCTCAAATTGTGTAATTCAAGCATATCGAATCCTCTGCGATTCAAGGTCTCACTCTAACCGTGAAAAGTATATCAAATATACAACCGATGACCTGGGCAAGCATATGTTGGATCTCTTTCAAGGCTCACCACGTTCGTTGCAAAGTTCACGCAGGAGATGA 1917 39.96 MGDCESIIPTSEGEQHILTSFQHLVKFLRTSQTVNDELKRLLADLDSHLTSMNLYSHLEVGKLSELETRFKSAEEKIRRWESNKSMIWDSGPREACEYMKAVDEIHKVQEGLRSLSANDGRKQNELLFQADSVVQIAMVRLEQELVHILAQHKLYFEPDYVPLQSGGYDVVYNESFVSAEDSLEEETSHTESVPAVYVVNLVHPYVIPHLKSIANVMFASNYIQEFCLAFVKMRKDAFNEYLFILEMEKYSIEDLLTMEWKVLNMKIKKWVWLIKIVIRVYLTSEQRLCNDIFEGIGSYSAVCFTEISATSMLRLLNFGEAVAMEPHRPEKLFHLLDMYEVLENLLGYIDALFSEETEKGSFLKVEFHDLFKKLGDSARATFVNFGSFIACSISTNPFPGGGVHHLTKYVMNYIKTLTVYRDSLVFLLQNEAADGLSHASELQNEINSMPCPMAYQLQSITSHLISNLNNKSRLYKDDALGHIFLMNNIHYMVQKVENSELRSLLGSEWMRKHIRMFQNHATIYMRVTWQSVLSLLRLDGDGLTTPKAVFKEKYRAFNAAFEEIYKNQTGWNVPDPQLRDDLLIQTSNCVIQAYRILCDSRSHSNREKYIKYTTDDLGKHMLDLFQGSPRSLQSSRRR 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 983187 986087 + Lsi02G001190.1 Lsi02g00119 654861

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00119 638 Coils Coil 63 83 - -
Lsi02g00119 638 PANTHER EXOCYST COMPLEX PROTEIN EXO70 24 632 IPR004140 GO:0000145|GO:0006887
Lsi02g00119 638 Pfam Exo70 exocyst complex subunit 268 621 IPR046364 GO:0000145|GO:0005546|GO:0006887
Lsi02g00119 638 SUPERFAMILY Cullin repeat-like 92 625 IPR016159 -
Lsi02g00119 638 Gene3D Exocyst complex component Exo70 78 635 - -
Lsi02g00119 638 PANTHER EXOCYST COMPLEX COMPONENT EXO70E2 24 632 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00119 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:101202747 1107.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00119 Lsi-Chr2:983187 Lsi07g00994 Lsi-Chr7:13795587 4.47E-178 dispersed
Lsi02g00119 Lsi-Chr2:983187 Lsi10g01339 Lsi-Chr10:17641018 2.81E-73 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g659 . . . Bda15g00670 . Bpe13g00204 Bma06g00256 . Cmo13g01120 . . Cma11g00035 . . . Cpe20g00075 . . . . . . . . . . . . . . . . . . . Lsi02g00119 Csa01g00599 Chy12g01498 Cme12g01942 . . Bda11g01727 Bda14g00880 . . . . Sed08g2120 . . Cma13g01074 . Car13g00910 . . . Bhi08g01084 Tan05g2361 Cmetu12g0690 Lac10g0148 Hepe07g2463 . . Cla04g01154 Cam04g1212 Cec01g1723 Cco01g1768 Clacu04g1239 Cmu04g1218 Cre01g1514 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011638 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00119 Lsi_Chr02 FPKM 10.117769 12.43153 12.411015 13.165654 19.933186 20.517918 17.873962 26.975924 24.568766 23.211714