Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00125 ATGGCTGCAAAGCTTCTACATTCTTTAGCTGATGAAAATCCAGATCTACAGAAGCAAATAGGATGCATGACTGGGATCTTGCAGTTGTTTGATCGTCAGCATGTACTCAGTGGAAGACATATGAGGCACAAGCGGCTTCCTCCTGGCACTTCTCATCTAAATATTGGCAACGTAGGGAAAGAGTACAATGTCTTTCAGAGAGAGGCAGCTGACATATCCCCAAATGAGAGTTTCAATGAGAAACAGAGGTTTAGCAAAGAATTATCGAGAGCTTCTTTCTCTTCTTGCTCATCTTCCTTATCCTCTAGTGAGTACAACAAAACAGCTCCATCGCAATCTTCCTCATTCGATCAGATACTTTTATCAAGAACACCATCAAGGGATTCTGTAGCAAACCAGTCAAATACATCTCCTCGTGTTGGAAGGCAACACCTTGATCTTCGAGATGTTGTGAAGGATTCTATGTATAGGGAAGCCAGAACGTTATCAGTCAAAACATCTACTAGTGAGGAACCACTGAGTCGTTCTATGAAGCATAGAGACTCTCCAAGGCCTGTACAGCTATCCCAATCCGCAGATGGGGCTTCGAAGGTTGATACAAATTGGAAACAGAAGATGCCTGTTGATTTAAAGGAGTCTCTTCTGGTTCTTGCTAAACTTCGAGATGCACCATGGTATTATAATGAAGTCGTAGAACACGAACAACTGTCTCAAGAAGTAAGAGACGGATTGTTGCAATCATTCTCTAGAGATGCTCCTCGGTTTTCTTATGATGGGAGAGAAGTTGATCGATTGTCCTTTGAATCACGAGATACCATTCGGTCAGCTCCAAAATTTAAAGACTTTCCAAGGCTCTCATTGGACAGCAGGGAGAGTTCAATTCAGGGTTCCAAATCTGTGTCAAATACAACTAGACATTTAAAGAACTTGCACGGTAGCGATTGCACTAATGAAAAAATTTCTGATCCACCACGACCATCAGGATCTCGGAAGCATCCCCCTAGTGTTGTGGCAAAGTTGATGGGATTGGAAGCACTTCCAGGTTCACCCTTGGCTAGTGATATTCAGGTTAAAGGTGACCCCTTTGTTAGCTCACTGGATGGCACAAGCTTTATCAGGCCAATTAGAACTGACTCTCCTCGGAACACGTTGAAAGGCCCAACTTCACCACGATGGAAGAATCCTGATTTAGTTATGAAACCTATACCAAATTCGAAGTTTCCTGTGGAAGTTGCGCCATGGAGGCAGCCAGATGGAACTCGAGCCTTTGATAAATCTGCTCTGAAGCATTCAAAAGGGTTAGCTGGATCATCTAACCCCTTTCCTTCTGTTTATAGCGAAATTGAAAAAAGATTGGAAGACTTGGAGTTTAAACAATCAGGGAAAGATCTTAGAGCACTAAAACAGATCCTTGACGCTATGCAATCAAAGGGGCTCTTGGATACTAGGAAGGAGGAGCATTTCAACAGTGCAACTCAAAGAGACAATGAACCGAAACGGGAGAGCGCTAGTGTTAATTCTAGGTTGACCAGCGAACAAAATCGGAAAAAAAACCAAAAGGCTGCAACAACTAGTAGGCCTGATTCTTCCAGGTGTGGGGAATCTCCAATTGTGATCATGAAACCAGCAAAACTTGTAGAAAAATCTGGAATTCCAGCTTCATCAGTTATTCAAATCGACGGCCTTCCTGGTCTCCCAAAGCTTCAGAAAGCCCCACATGGTAAAAAGAACCCCAGTGGTAGCCGATCAGTTAAAGATACATCTCCTGAAAATAGTCACAGGGACTCTGGTGCGAGTTCCACCAAAAAGAAAGATAATGTAAGAAATGTACGGCCAACAAATTCTTCTTCAAAGCCTCAACATTTACCTAAGGAAAACACCGTAAGTTCAATAAAAACCATAGGGTCTGTGAGCCCAAGACTGCAACAGAAGAAGGCTGAGCAAGACAAACGATCTCGACCACCAACTCCTCCATCTGACACAAACAAAACCAGATGTAAATCCAACAGACAAGGAACTGATTCTGGTTATTCTCTCGGAAAACCGAGAGTGAAACCTTCCCATGTCTCCCAAATGGATGACCAATTGAGTGAAATAAGCAATGAGTCAAGAACTTTGAGTAACCAGGGGGATGACATATCTCAACTGTCTGACAGTAATTTATCCTTGGACTCAAAGACAGATATTGAAGTCACCAGCAGTGAACTTCCGGCTGACATTAATGGCAGCCATAGTTTACAAATGAAGACTTCAAAGTACTCAGATTCTTGTTCATTGGAAAATGTAGAACTTGCTACTCCTGCTCCTGAACACCCTAGTCCGGTCTCCATTCTTGATGCTTCTATATATAGGGACGACGAACCATCTCCATCTCCTGTTAAGCAGATATCAAAAGCCCTCAAAGGCAATAGGACTTTAGCCTCTGGAGATTGTGGTGAATACCAATGGAGTACTGCAGATAACAGTGTGGAGCCCAGTCTTAGCACGGAAATCAACCGCAAGAAACTGCAAAACATTGACAACTTGGTTCAGAAGCTCAGGCGCCTGAACTCTCACTATGATGAAGCAAAAACAGATTACATTGCATCATTATGTGAGAATACCGATCCAGATAACAGATACATATCTGAAATATTGTTAGCTTCTGGCCTCTTACTCCGGGACCTCGGCTCAGGCTTAGCAACATTTCAACTCCATCCATCTGGTCATCCAATCAACCCCGAGTTGTTCTTTGTTTTGGAGCAAACCAAGACAAGCAGTTTGCTAAGAATGGATGACTGCAGCTCTCTGAAAGTTACAGATTCAAAACTGAACCTGGAGAAATCTCATCGCAAACTCATTTTTGATGCTGTTAATGAGATTCTTGCTAGAGAATTGTCTGTTGTTGCCGCATCACCAGAGCCTTGGACAACATCCAAAAAACTAGCAACTAAAACTCTTAGTGCTCAAAAGCTTCTGAAGGAGCTATGTTCCGAAATAGAACAACTTCAAACGAAGAGACCCGATGTGGACGATAGTTTGGATAGTATTTTAAACGAAGACATGATGCAAAGATCTGAAAGTTGGACCGATTTCTATGGCGACATCTCCAACGTTGTCTTAGACATTGAAAGATTGATCTTCAAAGACTTAGTTGACGAAATCGTATATGTCGAGGCTGCTCATTTACGCGCCAAGTCAGGCAGACGAAGACAGTTGTTTACTTGA 3207 42.66 MAAKLLHSLADENPDLQKQIGCMTGILQLFDRQHVLSGRHMRHKRLPPGTSHLNIGNVGKEYNVFQREAADISPNESFNEKQRFSKELSRASFSSCSSSLSSSEYNKTAPSQSSSFDQILLSRTPSRDSVANQSNTSPRVGRQHLDLRDVVKDSMYREARTLSVKTSTSEEPLSRSMKHRDSPRPVQLSQSADGASKVDTNWKQKMPVDLKESLLVLAKLRDAPWYYNEVVEHEQLSQEVRDGLLQSFSRDAPRFSYDGREVDRLSFESRDTIRSAPKFKDFPRLSLDSRESSIQGSKSVSNTTRHLKNLHGSDCTNEKISDPPRPSGSRKHPPSVVAKLMGLEALPGSPLASDIQVKGDPFVSSLDGTSFIRPIRTDSPRNTLKGPTSPRWKNPDLVMKPIPNSKFPVEVAPWRQPDGTRAFDKSALKHSKGLAGSSNPFPSVYSEIEKRLEDLEFKQSGKDLRALKQILDAMQSKGLLDTRKEEHFNSATQRDNEPKRESASVNSRLTSEQNRKKNQKAATTSRPDSSRCGESPIVIMKPAKLVEKSGIPASSVIQIDGLPGLPKLQKAPHGKKNPSGSRSVKDTSPENSHRDSGASSTKKKDNVRNVRPTNSSSKPQHLPKENTVSSIKTIGSVSPRLQQKKAEQDKRSRPPTPPSDTNKTRCKSNRQGTDSGYSLGKPRVKPSHVSQMDDQLSEISNESRTLSNQGDDISQLSDSNLSLDSKTDIEVTSSELPADINGSHSLQMKTSKYSDSCSLENVELATPAPEHPSPVSILDASIYRDDEPSPSPVKQISKALKGNRTLASGDCGEYQWSTADNSVEPSLSTEINRKKLQNIDNLVQKLRRLNSHYDEAKTDYIASLCENTDPDNRYISEILLASGLLLRDLGSGLATFQLHPSGHPINPELFFVLEQTKTSSLLRMDDCSSLKVTDSKLNLEKSHRKLIFDAVNEILARELSVVAASPEPWTTSKKLATKTLSAQKLLKELCSEIEQLQTKRPDVDDSLDSILNEDMMQRSESWTDFYGDISNVVLDIERLIFKDLVDEIVYVEAAHLRAKSGRRRQLFT 1068
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1022113 1026874 - Lsi02G001250.1 Lsi02g00125 654867

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00125 1068 MobiDBLite consensus disorder prediction 142 159 - -
Lsi02g00125 1068 MobiDBLite consensus disorder prediction 97 116 - -
Lsi02g00125 1068 MobiDBLite consensus disorder prediction 183 198 - -
Lsi02g00125 1068 MobiDBLite consensus disorder prediction 481 536 - -
Lsi02g00125 1068 MobiDBLite consensus disorder prediction 563 719 - -
Lsi02g00125 1068 MobiDBLite consensus disorder prediction 657 676 - -
Lsi02g00125 1068 MobiDBLite consensus disorder prediction 610 642 - -
Lsi02g00125 1068 Pfam Domain of unknown function (DUF4378) 872 1047 IPR025486 -
Lsi02g00125 1068 MobiDBLite consensus disorder prediction 290 323 - -
Lsi02g00125 1068 MobiDBLite consensus disorder prediction 373 389 - -
Lsi02g00125 1068 MobiDBLite consensus disorder prediction 481 502 - -
Lsi02g00125 1068 MobiDBLite consensus disorder prediction 124 200 - -
Lsi02g00125 1068 MobiDBLite consensus disorder prediction 124 141 - -
Lsi02g00125 1068 MobiDBLite consensus disorder prediction 587 609 - -
Lsi02g00125 1068 MobiDBLite consensus disorder prediction 690 719 - -
Lsi02g00125 1068 Coils Coil 832 859 - -
Lsi02g00125 1068 MobiDBLite consensus disorder prediction 290 334 - -
Lsi02g00125 1068 Pfam DUF761-associated sequence motif 333 348 IPR032795 -
Lsi02g00125 1068 MobiDBLite consensus disorder prediction 373 395 - -
Lsi02g00125 1068 PANTHER LONGIFOLIA PROTEIN 1 1068 IPR033334 GO:0051513
Lsi02g00125 1068 PANTHER LONGIFOLIA PROTEIN 1 1068 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00125 - - - csv:101202986 1898.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00175 Lsi-Chr3:2305734 Lsi02g00125 Lsi-Chr2:1022113 3.73E-116 transposed
Lsi05g00967 Lsi-Chr5:16871057 Lsi02g00125 Lsi-Chr2:1022113 9.23E-23 transposed
Lsi02g00125 Lsi-Chr2:1022113 Lsi06g01406 Lsi-Chr6:24610754 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g459 Blo04g00797 . Bda06g00519 Bda15g00627 . . . Bma12g00962 Cmo13g01113 . . Cma11g00213 . Car11g00192 Sed08g0284 . Cpe04g01455 Bhi02g00090 Tan09g2035 Cmetu02g0174 . Hepe09g0278 . . Cla06g01534 Cam06g1692 Cec06g1755 Cco06g1754 Clacu06g1660 Cmu06g1606 Cre06g2418 Cone2ag0795 Cone16ag0214 Cone13ag0031 Cone19ag0040 Lsi02g00125 Csa01g00608 Chy12g01492 Cme12g01932 . Blo15g00341 Bda11g01764 Bda14g00886 Bpe07g00753 Bpe15g00573 Bma03g00858 . Sed08g2125 . Cmo11g00215 Cma13g01068 . Car13g00904 Car18g00008 . . Bhi08g01076 Tan05g2350 Cmetu12g0276 Lac10g0173 Hepe07g2455 . . Cla04g01147 Cam04g1203 Cec01g1715 Cco01g1760 Clacu04g1230 Cmu04g1210 Cre01g1506 . Csa01g00300 Chy02g02436 Cme02g01823
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003334 4 1 2 2 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 2 1 1 1 1 2 3 2 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00125 Lsi_Chr02 FPKM 12.018377 10.289857 2.049009 1.989629 1.406142 1.212895 1.626744 0.490936 1.270013 0.74937