Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00131 ATGTCTTTAGAACAAGAATTTCTGTTCCTTATTCCTTCAACAATGGCCAATAATCTCAATCTTTTTCTTTGTTTCCTTCTCTTTGTGGCTATTTTCACCCTTTGCCTCAGCCCTGGTGGTCTAGCTTGGGCTCTAATTTCAAAGCCAAGAAATAAACCCATCATTCCTGGCCCTTGTGGCACTCCTATTTTAGGTCAAGTTTCTGCCTTTACCACTTCTTTAACTCATAGAGTCCTTGCTAAGCTTGCTCATACCTTAAAGGCCAAATCTTTAATGTCATTCTCAATTGGGTTCACTCGTTTTGTGATTTCAAGCAACCCCATCACAGCCAAAGAGCTTTTGAATAGCTCAGCTTTTGCTGATCGTCCTATTAAGGAATCAGCTTACGAGCTTTTGTTTCATAGAGCAATGGGGTTTGCTCCTTATGGGGAATATTGGAGGAATCTTAGGAGAATTTCAGCTACTCATTTGTTTAGTCCTAAAAGGGTTTGTGGATTTGGGGTTTTGAGGGAGAGAATTGGAGTTGAAATGATGGAGGAAATTAAGGGTTTGATGGAGAAGAATGGGGAAGTTGAAGTCAGGAAAGTTTTGCATTTTGGGTCATTGAGTAATGTTATGGGGAGTGTGTTTGGGAAAAGTGTTGAGTTTGGTGATAGTGAGATTGAGGAGTTGGTGAGTGAAGGGTATGATTTGCTTGGGAGTTTTAATTGGAGTGATCACTTTCCTCTTTTAGGTTGGTTGGATTTGCAAGGTGTGAGAAAAAGGTGTAGAGTTTTGGTGGGGAAAGTTAATGTTTTTGTTGGAAAAATCATTGAGGAGCATAGAATTAATAGGAAGGTTATTCTTGGTAAAGGAACTATTAACCCTAATGATAATGAAGATGGAGATTTTGTTGATGTGTTGCTTGATTTGGAAAAGGAAAACAAGCTCACTGACCCTGATATGATTGCTGTATTATGGGAAATGATATTCAGAGGAACAGACACCGTGGCAATTCTCCTAGAATGGATTTTAGCAAGAATGGTTCTTCATCCCGATATCCAAGCCAAACTCCAAACCGAAATCGACCGAGTCGTTGCCAAAACTGGCCGAAACATCTCGGATTCGGACCTCCCAAATCTCCCTTATCTCCATGTAGTTGTCAAAGAGACTCTAAGAATGCACCCTCCGGGCCCACTCCTCTCGTGGGCCCGCCTCGCCATCCACGACACCCACGTGGCCGGCCACTTCATTCCCGCCGGCACGACGGCGATGGTCAACATGTGGGCCATAACCCACGACGACCAAATCTGGCCTGGCCCGACAACATATGACCCGGACAGGTTCATTAAAGATGACGTGGCGATAATGGGGTCAGATTTGCGGCTCGCGCCGTTCGGGTCCGGAAGACGGGTTTGTCCTGGTAAAGCCATGGGGCTAGCCACAGTCGAGCTTTGGCTCGCTCAGTTGATTCAAAGGTTCGAATGGGTCAAGGCTGGTGGTTCGAAAAATGGTGTGGATTTGTCTGAGTGTTTGAAGCTGTCTCTAGAGATGAAACACCCTTTGATTTGTAGGGCTGTTCCTAGAGTTGTGGGGTTTGAGTCTCACCCATGA 1593 44.57 MSLEQEFLFLIPSTMANNLNLFLCFLLFVAIFTLCLSPGGLAWALISKPRNKPIIPGPCGTPILGQVSAFTTSLTHRVLAKLAHTLKAKSLMSFSIGFTRFVISSNPITAKELLNSSAFADRPIKESAYELLFHRAMGFAPYGEYWRNLRRISATHLFSPKRVCGFGVLRERIGVEMMEEIKGLMEKNGEVEVRKVLHFGSLSNVMGSVFGKSVEFGDSEIEELVSEGYDLLGSFNWSDHFPLLGWLDLQGVRKRCRVLVGKVNVFVGKIIEEHRINRKVILGKGTINPNDNEDGDFVDVLLDLEKENKLTDPDMIAVLWEMIFRGTDTVAILLEWILARMVLHPDIQAKLQTEIDRVVAKTGRNISDSDLPNLPYLHVVVKETLRMHPPGPLLSWARLAIHDTHVAGHFIPAGTTAMVNMWAITHDDQIWPGPTTYDPDRFIKDDVAIMGSDLRLAPFGSGRRVCPGKAMGLATVELWLAQLIQRFEWVKAGGSKNGVDLSECLKLSLEMKHPLICRAVPRVVGFESHP 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1069273 1072329 + Lsi02G001310.1 Lsi02g00131 654873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00131 530 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 459 468 IPR017972 GO:0005506|GO:0016705
Lsi02g00131 530 Gene3D Cytochrome P450 44 520 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00131 530 PANTHER CYTOCHROME P450 FAMILY PROTEIN 5 522 - -
Lsi02g00131 530 PRINTS E-class P450 group I signature 334 360 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00131 530 PRINTS E-class P450 group I signature 314 331 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00131 530 PRINTS E-class P450 group I signature 456 466 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00131 530 PRINTS E-class P450 group I signature 466 489 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00131 530 PRINTS E-class P450 group I signature 420 444 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00131 530 PRINTS E-class P450 group I signature 378 396 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00131 530 PRINTS P450 superfamily signature 379 390 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00131 530 PRINTS P450 superfamily signature 325 342 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00131 530 PRINTS P450 superfamily signature 457 466 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00131 530 PRINTS P450 superfamily signature 466 477 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00131 530 Pfam Cytochrome P450 56 491 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00131 530 PANTHER CYTOCHROME P450 78A7-RELATED 5 522 - -
Lsi02g00131 530 SUPERFAMILY Cytochrome P450 55 522 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00131 Lsi-Chr2:1069273 Lsi09g01657 Lsi-Chr9:24994503 6.66E-169 dispersed
Lsi10g00681 Lsi-Chr10:9538744 Lsi02g00131 Lsi-Chr2:1069273 5.28E-168 transposed
Lsi02g00131 Lsi-Chr2:1069273 Lsi08g00903 Lsi-Chr8:17391370 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00131 K20619 - csv:101203458 960.674