Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00133 ATGGAAGAAGAGATCGGAGAAGAATTCAAGTGGAGTGGTTTCACGTTTGATGAAGAGGAAGAGATTCTCAAGAAATGTGTTACGTTCTGTGTTAATTACAATCTAAAGCCTTCCGATATTGTTTCTAGCTGGGAGGTCTACTATCTCAACAGGCAATTAGATGGGTCAGTGGTGCAAATTGAACAGATGGATGGGTTCTTACAACATTTACAGAATGAGCAAAAAGAAGCAGTCATTAAAGGGGAACCAGATCTTCATGTTTACTCGAGCAAAGATGTTGACGTGATTTTGAATGATGAGGATGAAGATCTAAATGGAGACATTCTTAAGACCCCAAATGGGAAATCTCAGAGCCTCCACAAAGAGCGATTGGATTTGACACCTTACACGAATGAAGGCTTGTTCTCATCGGGAAAGCCTTCAAAGCATATGACACCCTTTGGTCAAAGAACAGAAAAGTTTGTTGTGAGGTTCAACATTAATAGCATGCCTGATAAGGTGGCTGCTGAAAAGGAAGATAATTGCGAGAATGATGAAGATGCAATCATCAAGAAGGTTCGACCCCTGCAAGGATGCTTATTGACAGTCCATGGATCAGGATTTGGACTTGAACCAAATTGCAGGTTCATGTATGACAAGGATGAAGATAGGTTTAATGCTCTTGATAACCGAATCATGAGGCATGCTTATGCTCTTGCTGCATCTGGGCTCTACGAAGAAGCAGTGGACCCTACAGTTGCTTCACAGAAAAGCATGTTTGCAGTGGGCATGATTTATTGTGATGGTGAAGGACACTTGAACGATAAGTCCACCTTGTTGCAAAGCAGTATCGCACATTCAGGGGGGCAGCGAGTTCGTCTAGAGTTACAAAACTTAAGCCAATTTTCAATCTTTCCTGGCCAGGTAGTAGGTATTGAAGGGCATAATCCTAGTGGACACTGCTTGATTGCGTCAAAACTTGTAGATTCTTTTCCTCTGTCCGCCACTATAGACCCCATTCTGCCTCCAGCAAAGAAGATAGCTTTGAACCATGATATCCAACCAATTAATCAATCTTCTACACCGTCAGAATTATCGATGCTTGGACCATTTATTGATTCTGAACATTCTGATATCAAGAGAGGAACTGTAGAGATGAGCTTTGAGGAAATTTTCAACTTTGAAGTTTTAAGAAGGGTACAAGATTATGCAGAACACATGGGTCCTGATGCACGTGTACTGTTGATGCCATCTACAAGGGATGCTCATCACGACTTTGTTTTTCCTCAGCCTGCTTTTGACATTCCATCTGATCTTAGACTTCAGATATCCAGTCTCCCAAACCCATGCATTTTGGAAGCAAATCAGTCAAAGATAGCCTGCTGCACCATGGATATTCTCAGACACCTTAGTGGAGAAGAGCTGTCAAGAAACCTAACTAAGGGAGCAACCAACGACCGCCTGAGCACACTTGCAACCGAAGGAGTTCCACTGGACTTTTCACTTGCTCCAAAAGCTCTCGACATCTCTGTAATACCTGATATTCTCATTCTTCCATCCGACATGAAACACTTCGTGAAGGTTATATCCCTTGGTGAAGGAAGTTCAGGGGAAGAGCAAGCGAGATGCATATGTGTGAATCCTGGAAGATTGGCCAAGGGAGAAGGAGGAGGTACTTTTGTAGAGCTTAATTACTTCGGTAGGCCTGACCAGATAAATGCTTCAGTTGTCAGCATATGA 1719 42.64 MEEEIGEEFKWSGFTFDEEEEILKKCVTFCVNYNLKPSDIVSSWEVYYLNRQLDGSVVQIEQMDGFLQHLQNEQKEAVIKGEPDLHVYSSKDVDVILNDEDEDLNGDILKTPNGKSQSLHKERLDLTPYTNEGLFSSGKPSKHMTPFGQRTEKFVVRFNINSMPDKVAAEKEDNCENDEDAIIKKVRPLQGCLLTVHGSGFGLEPNCRFMYDKDEDRFNALDNRIMRHAYALAASGLYEEAVDPTVASQKSMFAVGMIYCDGEGHLNDKSTLLQSSIAHSGGQRVRLELQNLSQFSIFPGQVVGIEGHNPSGHCLIASKLVDSFPLSATIDPILPPAKKIALNHDIQPINQSSTPSELSMLGPFIDSEHSDIKRGTVEMSFEEIFNFEVLRRVQDYAEHMGPDARVLLMPSTRDAHHDFVFPQPAFDIPSDLRLQISSLPNPCILEANQSKIACCTMDILRHLSGEELSRNLTKGATNDRLSTLATEGVPLDFSLAPKALDISVIPDILILPSDMKHFVKVISLGEGSSGEEQARCICVNPGRLAKGEGGGTFVELNYFGRPDQINASVVSI 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1086076 1091823 + Lsi02G001330.1 Lsi02g00133 654875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00133 572 PIRSF DNA_pol_alpha_2 339 564 IPR016722 -
Lsi02g00133 572 PIRSF DNA_pol_alpha_2 1 341 IPR016722 -
Lsi02g00133 572 Gene3D - 1 77 IPR043034 -
Lsi02g00133 572 Gene3D - 339 475 - -
Lsi02g00133 572 Gene3D - 484 569 - -
Lsi02g00133 572 Pfam DNA polymerase alpha/epsilon subunit B 346 519 IPR007185 GO:0003677|GO:0006260
Lsi02g00133 572 PANTHER DNA POLYMERASE 2 ALPHA 70 KDA SUBUNIT 1 572 IPR016722 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00133 K02321 - csv:101206268 1057.36