Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00135 ATGTGCGCGGCATTCGACTCGCTGGACCCGAATGGAAAAATCGAAATCAAATGGGATGTCATGTCTTGGACTGTAGATGGTTATGTGGTAAGTCTCTCTTTTGAAACACAACTGCAAGTATATCCTATTCTAACGATACTAAACTTGTATGCAACTGTGACCATGACCAACTTTCAGACATATCGATATATCACAAGCCCCGGATGGACATTGGGATGGGCATGGGCAAAGAGAGAGGTCATCTGGTCCATGCAGGGAGCTGAAGCTACTGATCAAGGAGATTGTTCCACATTTTCAGAAACTTTGCCACACAGTTGCAAAAGAGATCCATCAGTGGTTGACTTACTTCCAGGTGCTCCTTATAACAAACAGGTAGCTATGTGCTGCAAAGGTGGTGTTTTGACATCTTGGGGACAAGATCCTTCATCTGCTGTCTCTGCCTTCCAATTGACTGTTGGTCGTTCCGGTAGTTCTAATAAAACAGTGAGACTTCCCAAAAATTTCACCTTGTATGGTCCAGGGCTAGGTTACACATGTGGCCAAGCAAAGATTACTCCAACATCAGCCTTCTATTCATCCGATGGTCGTCGAAAAACTAATGCATTGATGACTTGGAATGTGACATGCTCTTACTCGCAATTTCTTGCTTCTGAAACACCAACATGCTATCTCTCAATGTCATCTTTCTATAATTCAAAAATCACTCCTTGTAAAGCATGTGCTTGTGGTTGCCAAGACAGAACAACTTGTATCCTGACCGAATCGGATATTCAAAGCATAACGGGATCGAATGCACCTACAAATGATAGTGCTCCATTGTTGCAGTGCACGATACATAACTGTCCAATTCAAGTCCACTGGCATGTTAAGGAAAATTACAAGGGATATTGGCGAGTTAAAATAACCATCAACAATCTCAACTATCGATTTAACTATACACAATGGACTCTTGTCGTCGAGCACCCCAATTTCAACAACACAATGGAAGTTTATAGCTTTGTCTATAAGCCACTTACCCCCTTCATCTCTAAGAACGACACAGCACTGTTCCATGGCTTAAAATCTTTCAATGATGTGCTACTTCAAGCAGGGCCAAATGGAAATGTCTACTCAGAGATGATTTTTCAGAAGGATTCAACATTTACATTGGAACAGGGCTGGGCTTTCCCTCGAAAAGTTTACTTTGATGGAGATGAATGTGTGATGCCATTTCCTGATTCTTACCCCTACCTACCCAACTTAGCTAATGCAAATCCAATTCTATTGTCAACACTAGCTTGCATTTTGCTTCCCATATTCCTTACATTGTTATCTTAG 1317 41.69 MCAAFDSLDPNGKIEIKWDVMSWTVDGYVVSLSFETQLQVYPILTILNLYATVTMTNFQTYRYITSPGWTLGWAWAKREVIWSMQGAEATDQGDCSTFSETLPHSCKRDPSVVDLLPGAPYNKQVAMCCKGGVLTSWGQDPSSAVSAFQLTVGRSGSSNKTVRLPKNFTLYGPGLGYTCGQAKITPTSAFYSSDGRRKTNALMTWNVTCSYSQFLASETPTCYLSMSSFYNSKITPCKACACGCQDRTTCILTESDIQSITGSNAPTNDSAPLLQCTIHNCPIQVHWHVKENYKGYWRVKITINNLNYRFNYTQWTLVVEHPNFNNTMEVYSFVYKPLTPFISKNDTALFHGLKSFNDVLLQAGPNGNVYSEMIFQKDSTFTLEQGWAFPRKVYFDGDECVMPFPDSYPYLPNLANANPILLSTLACILLPIFLTLLS 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1100186 1103738 - Lsi02G001350.1 Lsi02g00135 654877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00135 438 PANTHER COBRA-LIKE PROTEIN 3 41 - -
Lsi02g00135 438 PANTHER PROTEIN COBRA 3 41 IPR006918 GO:0010215|GO:0031225
Lsi02g00135 438 PIRSF COBRA 1 438 IPR006918 GO:0010215|GO:0031225
Lsi02g00135 438 Pfam COBRA-like protein 50 212 IPR006918 GO:0010215|GO:0031225
Lsi02g00135 438 PANTHER COBRA-LIKE PROTEIN 50 432 - -
Lsi02g00135 438 PANTHER PROTEIN COBRA 50 432 IPR006918 GO:0010215|GO:0031225
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi02g00135 Lsi06g01401 CCT
Lsi02g00135 Lsi06g01401 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00135 Lsi-Chr2:1100186 Lsi07g00952 Lsi-Chr7:11986324 0 dispersed
Lsi02g00135 Lsi-Chr2:1100186 Lsi06g01401 Lsi-Chr6:24569403 0 wgd
Lsi02g00135 Lsi-Chr2:1100186 Lsi07g00951 Lsi-Chr7:11983015 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00135 - - csv:101203708 772.696