Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00137 ATGGAGTCGTGGAACTATGGTACTCAAGGGAAGGGATTTCTGTCTGATGAGATGAATTCATCTACTAATTCACCTCTGAGAAGTAAATATTCTTTGTTGGGTTGGGAATTCAAGAACCCATGTAGTTTTGGGGACAACATGCTTCTTTCAAATGGTGGTCAGCATGTGGAGAATCAGAGCTTTGGGGAACTGGAATTTCCCCAAATGGTTGGAAAACAATTACCTGTTGATTCTGTCAGTGATGTCTTGAATACCAAAATTGATGGAGGTAGAAACTTGAATCTGGTTTTGCCCACCTTTCATGGAGAAGAGGAGTCCACTTCAAAGCTCTCTGGCTCCATTGTAGACTCTAACAATCGAGATTCATCTCTTATTGATTTGAAGCTAGGCAGATTTATTGATCAAGGGGATGCTCACAGTTCTAAATATTCCAAGAGAGCTGCAATTTCATCTTCCACTGAATCATCAACTTCTCAGAAGAAAATGCGATCTCAAGGGGTGAATTTCCAGACTGCGTTTTGCCAAGTCTATGGTTGTAACAAAGATCTCAGCTCCTCTAAAGACTACCACAAGAGGCATAAAGTTTGTGAGGTTCATTCAAAGACTGCCAAAGTTATTGTGAACGGCATAGAACAGAGGTTTTGTCAGCAATGCAGCAGGTTTCATTTGCTTGTTGAATTTGATGATGGTAAACGCAGCTGTCGTAAACGGCTTGCAGGCCACAATGAACGAAGAAGAAAGCCTCAAGTTAGTTTTCACTCAGGAAGGGCACAGAGGTTGCTTCAGCCATATAATGGTATTGGAGACAGCAGATTTCAGGAGAAAACGTTGACTGCAACTTCATTTATCTGCAAAGATATACTGTCTAGTGGCCTGTATTATCCAGAGAAGCTTGGAGAAAACGATTGGTGTAAGCGTATAAAAGTTGAGGGGAAGAATGATTATAATTCTATGTCTGCAACTTCACTGGGCAACAGGCATCTGAATGTGAAATCTCCCTTGCTTCCCTATGATTTTGAAGTACAGATTCCTCCTTTTCAGGAAAATGGAACTAGTACAGCACCTACAGCAAACATGTTAAGTGAGACAACTTGCCAATATTCACATAATGTGGGAGGTCCCCATATTGATACACATCCTTTGTTCCACCACACTACCTTATCAAGCGAAGACTTTGGAGTCTATGATGCAGCATCAACCATCCAAGGACTTTCTGGAATTCCGGACTCTGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCACAAAGTGCATCGAACCATCCATCCATAGTTCACATTCCTCGTGCTTTCATTATGTCCGAGAGTCAATCGAATTACAGCATGAGTGAACTCTCCGAAAAGCTCATGGGAGTGAGCCCACAGGCTTCTTCAACTGGGATTTCGAGTAAATTTGCCTCGGGGATGAGTGAAGCTCAAATGGGTCCCATACTGACGTGTGAAAGTAGTGATCGTACTGTCACCTTTCAGATTCCTGATAGGGTTCTTCATAGATCAGGTTTGGCAAATTCCAAAGCTAATCTTTCCTATGAACGCACTCCAACTATTGACTTGCTACAACTCTCATCACAACTCCAGCGAGTGGAACATCAAAGGCACTCCATGCAGTTTCTTTTTGATAATAATACTCATTGGGTTCTGGGTTCAAGCAGTGACAAGTACAATGGCATTTGCAAGGTATCATTAGGAAAGTACACTGGTATTTACTTGTTCTTTGTGCTGTCAGGATCAATGAGATCAATAAAGACTCTGCGTAGGAGATACGTCATGAAGGCTGACGAGAAGTTGAAACTTAAACCCATCACACCTATGTCAATGGTACATTTTGTTAGCCAAGGAGAGAATAAATTGTTGTATAATCTTCCTATCTAG 1890 41.69 MESWNYGTQGKGFLSDEMNSSTNSPLRSKYSLLGWEFKNPCSFGDNMLLSNGGQHVENQSFGELEFPQMVGKQLPVDSVSDVLNTKIDGGRNLNLVLPTFHGEEESTSKLSGSIVDSNNRDSSLIDLKLGRFIDQGDAHSSKYSKRAAISSSTESSTSQKKMRSQGVNFQTAFCQVYGCNKDLSSSKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLVEFDDGKRSCRKRLAGHNERRRKPQVSFHSGRAQRLLQPYNGIGDSRFQEKTLTATSFICKDILSSGLYYPEKLGENDWCKRIKVEGKNDYNSMSATSLGNRHLNVKSPLLPYDFEVQIPPFQENGTSTAPTANMLSETTCQYSHNVGGPHIDTHPLFHHTTLSSEDFGVYDAASTIQGLSGIPDSGCALSLLSSQSQSASNHPSIVHIPRAFIMSESQSNYSMSELSEKLMGVSPQASSTGISSKFASGMSEAQMGPILTCESSDRTVTFQIPDRVLHRSGLANSKANLSYERTPTIDLLQLSSQLQRVEHQRHSMQFLFDNNTHWVLGSSSDKYNGICKVSLGKYTGIYLFFVLSGSMRSIKTLRRRYVMKADEKLKLKPITPMSMVHFVSQGENKLLYNLPI 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1113659 1119331 - Lsi02G001370.1 Lsi02g00137 654879

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00137 629 ProSiteProfiles Zinc finger SBP-type profile. 171 248 IPR004333 GO:0003677
Lsi02g00137 629 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 44 550 IPR044817 GO:0003677
Lsi02g00137 629 MobiDBLite consensus disorder prediction 143 162 - -
Lsi02g00137 629 Pfam SBP domain 174 247 IPR004333 GO:0003677
Lsi02g00137 629 Gene3D - 166 235 IPR036893 GO:0003677|GO:0005634
Lsi02g00137 629 SUPERFAMILY SBT domain 172 252 IPR036893 GO:0003677|GO:0005634
Lsi02g00137 629 MobiDBLite consensus disorder prediction 1 22 - -
Lsi02g00137 629 PANTHER 1 PROTEIN, PUTATIVE-RELATED 44 550 - -
Lsi02g00137 629 MobiDBLite consensus disorder prediction 144 162 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00137 - - - csv:101206747 1027.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00137 Lsi-Chr2:1113659 Lsi09g01730 Lsi-Chr9:25940387 7.76E-38 dispersed
Lsi04g02062 Lsi-Chr4:27734848 Lsi02g00137 Lsi-Chr2:1113659 1.26E-32 transposed
Lsi05g01490 Lsi-Chr5:22688528 Lsi02g00137 Lsi-Chr2:1113659 8.68E-22 transposed
Lsi09g01630 Lsi-Chr9:24584950 Lsi02g00137 Lsi-Chr2:1113659 5.94E-34 transposed
Lsi02g00137 Lsi-Chr2:1113659 Lsi06g01398 Lsi-Chr6:24549992 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi03g01153 . 180 1012 SBP-box Gene Family AT2G47070 55.1 7.3e-238 820.5
Lsi03g01148 . 180 1011 SBP-box Gene Family AT2G47070 53.8 6.4e-234 807.4
Lsi03g01153 . 25 1012 SBP-box Gene Family AT3G60030 54.2 2.7e-274 941.8
Lsi03g01148 . 25 1011 SBP-box Gene Family AT3G60030 53.2 1.0e-273 939.9
Lsi09g01730 . 15 163 SBP-box Gene Family AT5G50570 55.3 8.7e-40 161.4
Lsi02g00137 . 118 276 SBP-box Gene Family AT1G69170 54.1 1.8e-41 167.2
Lsi03g01153 . 180 1012 SBP-box Gene Family AT2G47070 55.1 7.3e-238 820.5
Lsi03g01148 . 180 1011 SBP-box Gene Family AT2G47070 53.8 6.4e-234 807.4
Lsi02g00137 . 118 276 SBP-box Gene Family AT1G69170 54.1 1.8e-41 167.2
Lsi03g01153 . 25 1012 SBP-box Gene Family AT3G60030 54.2 2.7e-274 941.8
Lsi03g01148 . 25 1011 SBP-box Gene Family AT3G60030 53.2 1.0e-273 939.9
Lsi09g01730 . 15 163 SBP-box Gene Family AT5G50570 55.3 8.7e-40 161.4
Lsi09g01730 . 15 163 SBP-box Gene Family AT5G50670 55.3 8.7e-40 161.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001097 2 4 1 1 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 5 12 1 80
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24735 PF03110 SBP 3.70E-31 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00137 Lsi_Chr02 FPKM 4.60368 4.818867 0.130499 0.0 0.0 0.0 0.057445 0.346117 0.199699 0.132746