Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00137 ATGGAGTCGTGGAACTATGGTACTCAAGGGAAGGGATTTCTGTCTGATGAGATGAATTCATCTACTAATTCACCTCTGAGAAGTAAATATTCTTTGTTGGGTTGGGAATTCAAGAACCCATGTAGTTTTGGGGACAACATGCTTCTTTCAAATGGTGGTCAGCATGTGGAGAATCAGAGCTTTGGGGAACTGGAATTTCCCCAAATGGTTGGAAAACAATTACCTGTTGATTCTGTCAGTGATGTCTTGAATACCAAAATTGATGGAGGTAGAAACTTGAATCTGGTTTTGCCCACCTTTCATGGAGAAGAGGAGTCCACTTCAAAGCTCTCTGGCTCCATTGTAGACTCTAACAATCGAGATTCATCTCTTATTGATTTGAAGCTAGGCAGATTTATTGATCAAGGGGATGCTCACAGTTCTAAATATTCCAAGAGAGCTGCAATTTCATCTTCCACTGAATCATCAACTTCTCAGAAGAAAATGCGATCTCAAGGGGTGAATTTCCAGACTGCGTTTTGCCAAGTCTATGGTTGTAACAAAGATCTCAGCTCCTCTAAAGACTACCACAAGAGGCATAAAGTTTGTGAGGTTCATTCAAAGACTGCCAAAGTTATTGTGAACGGCATAGAACAGAGGTTTTGTCAGCAATGCAGCAGGTTTCATTTGCTTGTTGAATTTGATGATGGTAAACGCAGCTGTCGTAAACGGCTTGCAGGCCACAATGAACGAAGAAGAAAGCCTCAAGTTAGTTTTCACTCAGGAAGGGCACAGAGGTTGCTTCAGCCATATAATGGTATTGGAGACAGCAGATTTCAGGAGAAAACGTTGACTGCAACTTCATTTATCTGCAAAGATATACTGTCTAGTGGCCTGTATTATCCAGAGAAGCTTGGAGAAAACGATTGGTGTAAGCGTATAAAAGTTGAGGGGAAGAATGATTATAATTCTATGTCTGCAACTTCACTGGGCAACAGGCATCTGAATGTGAAATCTCCCTTGCTTCCCTATGATTTTGAAGTACAGATTCCTCCTTTTCAGGAAAATGGAACTAGTACAGCACCTACAGCAAACATGTTAAGTGAGACAACTTGCCAATATTCACATAATGTGGGAGGTCCCCATATTGATACACATCCTTTGTTCCACCACACTACCTTATCAAGCGAAGACTTTGGAGTCTATGATGCAGCATCAACCATCCAAGGACTTTCTGGAATTCCGGACTCTGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCACAAAGTGCATCGAACCATCCATCCATAGTTCACATTCCTCGTGCTTTCATTATGTCCGAGAGTCAATCGAATTACAGCATGAGTGAACTCTCCGAAAAGCTCATGGGAGTGAGCCCACAGGCTTCTTCAACTGGGATTTCGAGTAAATTTGCCTCGGGGATGAGTGAAGCTCAAATGGGTCCCATACTGACGTGTGAAAGTAGTGATCGTACTGTCACCTTTCAGATTCCTGATAGGGTTCTTCATAGATCAGGTTTGGCAAATTCCAAAGCTAATCTTTCCTATGAACGCACTCCAACTATTGACTTGCTACAACTCTCATCACAACTCCAGCGAGTGGAACATCAAAGGCACTCCATGCAGTTTCTTTTTGATAATAATACTCATTGGGTTCTGGGTTCAAGCAGTGACAAGTACAATGGCATTTGCAAGGTATCATTAGGAAAGTACACTGGTATTTACTTGTTCTTTGTGCTGTCAGGATCAATGAGATCAATAAAGACTCTGCGTAGGAGATACGTCATGAAGGCTGACGAGAAGTTGAAACTTAAACCCATCACACCTATGTCAATGGTACATTTTGTTAGCCAAGGAGAGAATAAATTGTTGTATAATCTTCCTATCTAG 1890 41.69 MESWNYGTQGKGFLSDEMNSSTNSPLRSKYSLLGWEFKNPCSFGDNMLLSNGGQHVENQSFGELEFPQMVGKQLPVDSVSDVLNTKIDGGRNLNLVLPTFHGEEESTSKLSGSIVDSNNRDSSLIDLKLGRFIDQGDAHSSKYSKRAAISSSTESSTSQKKMRSQGVNFQTAFCQVYGCNKDLSSSKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLVEFDDGKRSCRKRLAGHNERRRKPQVSFHSGRAQRLLQPYNGIGDSRFQEKTLTATSFICKDILSSGLYYPEKLGENDWCKRIKVEGKNDYNSMSATSLGNRHLNVKSPLLPYDFEVQIPPFQENGTSTAPTANMLSETTCQYSHNVGGPHIDTHPLFHHTTLSSEDFGVYDAASTIQGLSGIPDSGCALSLLSSQSQSASNHPSIVHIPRAFIMSESQSNYSMSELSEKLMGVSPQASSTGISSKFASGMSEAQMGPILTCESSDRTVTFQIPDRVLHRSGLANSKANLSYERTPTIDLLQLSSQLQRVEHQRHSMQFLFDNNTHWVLGSSSDKYNGICKVSLGKYTGIYLFFVLSGSMRSIKTLRRRYVMKADEKLKLKPITPMSMVHFVSQGENKLLYNLPI 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1113659 1119331 - Lsi02G001370.1 Lsi02g00137 654879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00137 629 ProSiteProfiles Zinc finger SBP-type profile. 171 248 IPR004333 GO:0003677
Lsi02g00137 629 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 44 550 IPR044817 GO:0003677
Lsi02g00137 629 MobiDBLite consensus disorder prediction 143 162 - -
Lsi02g00137 629 Pfam SBP domain 174 247 IPR004333 GO:0003677
Lsi02g00137 629 Gene3D - 166 235 IPR036893 GO:0003677|GO:0005634
Lsi02g00137 629 SUPERFAMILY SBT domain 172 252 IPR036893 GO:0003677|GO:0005634
Lsi02g00137 629 MobiDBLite consensus disorder prediction 1 22 - -
Lsi02g00137 629 PANTHER 1 PROTEIN, PUTATIVE-RELATED 44 550 - -
Lsi02g00137 629 MobiDBLite consensus disorder prediction 144 162 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00137 Lsi-Chr2:1113659 Lsi09g01730 Lsi-Chr9:25940387 7.76E-38 dispersed
Lsi04g02062 Lsi-Chr4:27734848 Lsi02g00137 Lsi-Chr2:1113659 1.26E-32 transposed
Lsi05g01490 Lsi-Chr5:22688528 Lsi02g00137 Lsi-Chr2:1113659 8.68E-22 transposed
Lsi09g01630 Lsi-Chr9:24584950 Lsi02g00137 Lsi-Chr2:1113659 5.94E-34 transposed
Lsi02g00137 Lsi-Chr2:1113659 Lsi06g01398 Lsi-Chr6:24549992 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24735 PF03110 SBP 3.70E-31 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00137 - - csv:101206747 1027.7