Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00138 ATGGGAAGAGGAAGAGTAGAATTGAAGAGAATTGAGAACAAAATTAACAGGCAAGTCACTTTTGCCAAGAGAAGAAATGGTTTGCTTAAGAAAGCTTATGAACTCTCAGTTCTTTGCGATGCTGAACTTGCCCTCATCATCTTCTCTAATCGTGGCAAGCTCTTTGAGTTTTGTAGTGGCTCTAGATCTAAAGTCGTCCGGCTTCTTAAACAGTTTTCTCAAGATATCTCAACTAGGACACAGCCAAATATTCTAAGCATGACCAAAACGCTCGAGAAATATCGAAGGTGTAGTTATGGTATACTGGATGCTACTCGTCATGGAAATGAGAATCATCAGCCACAGAGCTTTGATGATTATTTGAACCTAAAAGCCACAGTTGAATTCATGCAGCAATCTCAGAGAAACCTTTTGGGAGAAGATTTAGGTCCATTGAATACAAAGGAACTTGAGCAACTTGAACATCAATTGGAGACATCCTTGGAGCGCATTAGATCCACAAAGACACAAAGCCTACTTGACCAGCTTGCAGAACTTCAACACAAGGAACATATGCTTGTTGAAGACAATCGAGGTCTAAAGAAGAAGCTGGAAGAAAGCAGTGCACAATTAGCGGCGGCGGCAGCCACTGCATGGGGCTGGGAAGGCACCGCCGGAGGGCACAGCATGGAGTATCCCAGCCGTGTTGCTTCACAATCAGACTCCTTTTTCCACCCCATAATTCAACCCACTCCGACTTTACAAATTGGGTACAATTCTGTTGTCTCAATGGGGTTGAATAATAATATTGGACCTTCATCCCAAAATGCCAATAATGGATATCACCTTGGCTGGATGCTTTAA 843 42.82 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAELALIIFSNRGKLFEFCSGSRSKVVRLLKQFSQDISTRTQPNILSMTKTLEKYRRCSYGILDATRHGNENHQPQSFDDYLNLKATVEFMQQSQRNLLGEDLGPLNTKELEQLEHQLETSLERIRSTKTQSLLDQLAELQHKEHMLVEDNRGLKKKLEESSAQLAAAAATAWGWEGTAGGHSMEYPSRVASQSDSFFHPIIQPTPTLQIGYNSVVSMGLNNNIGPSSQNANNGYHLGWML 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1135478 1140427 + Lsi02G001380.1 Lsi02g00138 654880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00138 280 Coils Coil 190 210 - -
Lsi02g00138 280 PANTHER SERUM RESPONSE FACTOR HOMOLOG 85 261 - -
Lsi02g00138 280 Coils Coil 150 170 - -
Lsi02g00138 280 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Lsi02g00138 280 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lsi02g00138 280 Pfam K-box region 110 197 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lsi02g00138 280 ProSiteProfiles K-box domain profile. 113 203 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lsi02g00138 280 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 62 - -
Lsi02g00138 280 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Lsi02g00138 280 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Lsi02g00138 280 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lsi02g00138 280 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lsi02g00138 280 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lsi02g00138 280 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lsi02g00138 280 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 85 261 - -
Lsi02g00138 280 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 62 - -
Lsi02g00138 280 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lsi02g00138 280 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00138 Lsi-Chr2:1135478 Lsi07g00959 Lsi-Chr7:12284425 2.82E-49 dispersed
Lsi04g00407 Lsi-Chr4:3977010 Lsi02g00138 Lsi-Chr2:1135478 9.80E-17 dispersed
Lsi09g01914 Lsi-Chr9:27979417 Lsi02g00138 Lsi-Chr2:1135478 1.04E-33 dispersed
Lsi08g00907 Lsi-Chr8:17449704 Lsi02g00138 Lsi-Chr2:1135478 1.38E-42 transposed
Lsi09g01727 Lsi-Chr9:25878192 Lsi02g00138 Lsi-Chr2:1135478 9.85E-26 transposed
Lsi02g00138 Lsi-Chr2:1135478 Lsi07g00957 Lsi-Chr7:12109274 4.29E-94 wgd
Lsi02g00138 Lsi-Chr2:1135478 Lsi08g00906 Lsi-Chr8:17434534 3.58E-13 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24736 PF01486 K-box 5.30E-25 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00138 K09264 K09260 csv:101204197 389.037