Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00140 ATGAATTTGTTAATTAAAGAAAGAAAAAAGAAAACGAAAAAAGAAGTTAAATCCGCAGCCTTCTTCTTCAATTCAATTTCCAGTCGCCATTGTCATCTTTCTCTATCTCTCTCCCTATATTCTCCATCCGAGAGAATCATGGCGACAAAATCCGAGAAATTTTCTGCGGATTTTGTGATGGGTGGAGTTGCTGCGATTGTGGCCAAAACTGCAGCGGCACCCATTGAGAGAGTCAAGCTTTTGTTGCAGAATCAGGGAGAGATGATAAAGAGAGGGCATCTTCAGAAGCCATATCTGGGCATTCATCACTGTTTCAGAACAGTCTTGAGAGAAGAAGGCCTGTTCTCGTTATGGAGGGGAAATCAGGCTAATGTTATTCGATATTTCCCTACTCAGGCTTTCAACTTTGCGTTCAAAGGTTACTTCAAAACAAAGTTTGGGCGGTCGAAAGAGAAGGATGGATACGTCAAGTGGTTTGCTGGAAATGTTGCTTCAGGAAGTGCTGCAGGAGCAACTACATCTTTGTTTCTGTATCATTTGGATTATGCACGAACTCGACTTGGCACCGATGCAAGGGACGGTGGCAGTAACAGTCAGCGCCAGTTTAAAGGGATATTGGATGTCTACAGAAAAACATTGTCAAGTGATGGAATTGTTGGTCTATACCGAGGATTTAGCGTTTCGATCGTGGGAATTACTCTGTACAGGGGCATGTATTTTGGGATTTACGACACTTTGAAGCCTCTTGTTCTGGTTGGACAGTATGAGACATTGAACCTCAAACCTTTTACTAGAAGATATATGGAAGGGAACTTTTTTGCTAGTTTCTTATTGGGGTGGAGTATTACAACCTTTTCTGGGGTATGTGCTTATCCTTTCGACACACTGCGACGAAGAATGATGCTTACATCTGGACAAACCCTGAAGTACCGTAGCGGTTTGCATGCATTTTCTGAGATCATTCGCCATGAGGGCATTGCTGCCCTTTTTCGAGGTGTCACGGCCAATATGCTTGTTGGCGTTGCAGGGGCTGGCGTTCTTGCAGGATATGATCAATTGCACAAAATTGCATGTAGACAAGGTTATTCCTTTGGAGGGCAGCATCAAATAGCTTCAAAATGA 1122 43.14 MNLLIKERKKKTKKEVKSAAFFFNSISSRHCHLSLSLSLYSPSERIMATKSEKFSADFVMGGVAAIVAKTAAAPIERVKLLLQNQGEMIKRGHLQKPYLGIHHCFRTVLREEGLFSLWRGNQANVIRYFPTQAFNFAFKGYFKTKFGRSKEKDGYVKWFAGNVASGSAAGATTSLFLYHLDYARTRLGTDARDGGSNSQRQFKGILDVYRKTLSSDGIVGLYRGFSVSIVGITLYRGMYFGIYDTLKPLVLVGQYETLNLKPFTRRYMEGNFFASFLLGWSITTFSGVCAYPFDTLRRRMMLTSGQTLKYRSGLHAFSEIIRHEGIAALFRGVTANMLVGVAGAGVLAGYDQLHKIACRQGYSFGGQHQIASK 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1159217 1165449 - Lsi02G001400.1 Lsi02g00140 654882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00140 373 Gene3D Mitochondrial carrier domain 47 362 IPR023395 -
Lsi02g00140 373 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 47 367 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lsi02g00140 373 PRINTS Mitochondrial carrier protein signature 57 70 IPR002067 GO:0055085
Lsi02g00140 373 PRINTS Mitochondrial carrier protein signature 172 190 IPR002067 GO:0055085
Lsi02g00140 373 PRINTS Mitochondrial carrier protein signature 120 140 IPR002067 GO:0055085
Lsi02g00140 373 PRINTS Mitochondrial carrier protein signature 222 240 IPR002067 GO:0055085
Lsi02g00140 373 PRINTS Mitochondrial carrier protein signature 70 84 IPR002067 GO:0055085
Lsi02g00140 373 PRINTS Mitochondrial carrier protein signature 279 301 IPR002067 GO:0055085
Lsi02g00140 373 PANTHER ADP,ATP CARRIER PROTEIN ER-ANT1 47 367 - -
Lsi02g00140 373 Pfam Mitochondrial carrier protein 271 355 IPR018108 -
Lsi02g00140 373 Pfam Mitochondrial carrier protein 158 250 IPR018108 -
Lsi02g00140 373 Pfam Mitochondrial carrier protein 52 148 IPR018108 -
Lsi02g00140 373 PRINTS Adenine nucleotide translocator signature 54 66 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lsi02g00140 373 PRINTS Adenine nucleotide translocator signature 275 291 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lsi02g00140 373 PRINTS Adenine nucleotide translocator signature 98 119 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lsi02g00140 373 PRINTS Adenine nucleotide translocator signature 131 143 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lsi02g00140 373 PRINTS Adenine nucleotide translocator signature 157 170 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lsi02g00140 373 SUPERFAMILY Mitochondrial carrier 52 353 IPR023395 -
Lsi02g00140 373 ProSiteProfiles Solute carrier (Solcar) repeat profile. 157 249 IPR018108 -
Lsi02g00140 373 ProSiteProfiles Solute carrier (Solcar) repeat profile. 52 145 IPR018108 -
Lsi02g00140 373 ProSiteProfiles Solute carrier (Solcar) repeat profile. 270 356 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00140 Lsi-Chr2:1159217 Lsi08g01485 Lsi-Chr8:23007388 4.66E-132 dispersed
Lsi02g00140 Lsi-Chr2:1159217 Lsi01g01544 Lsi-Chr1:13564225 1.26E-27 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00140 K05863 - csv:101207715 559.296