Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00153 ATGGCGATGAAGATGGCCATCAGAGCTTCCGCCATTCCCAAACATCACCCACCTCCTTCACTTCCTTCTTCCTCTCACAGATCCGATTCCAAATCCCAATTCCGTCCCATCTCCGTTTCTCTACCGGCTTCCACTACCCTCTCTCTCTTAGCCCTATTTTCTTCTCCTTACCAAGCTAGGGCTCTCAACAAAGACCAAATCGTCTCATCTCTCAATGAAGTGGAGAAGACGTTTGATCAGGTTCAAGAAATAGGTTCGAATTTCTTTGATATTGCACAACAGGTCATTGACTCTGCTAGAAATATTCTGAAGCCGGGTGTTGATGTGGCGCTGCCGATTGTGAAGCAGGCTGGAGAAGAGGCACTGAAAGTTGCTTCTCCAACAATTTCAGAGGCTTCAAAGAAAGCCCTAGAAGCACTTGAAGGCTCTGGCATTGACACTGAACCTGTTCTAAGTGCTGCTAAGACAGTAGTAGGCGCAGCACAACAAACTGGTAAAGTCATTGAAGGTGCTAAACCTATAGCCTCATCGACTGTCGAGACGATCTCCACGACCGACCCTCTTGTAATTGCAGAAATTGCTGGAGTGTTAGCCTTGGCTTACCTGCTCTTTCCGCCAATTTGGTCTGCCATCTCTTTCAACTTTCGTGGCTACAAAGGTGAACTATCTCCTGCTCAAACACTCGATCTAATTTCGTCCAGCAATTACTTTCTGATCGATATACGATCCGAGAAGGACAAGGATAAGTCTGGCATTCCTCGCCTTCCTTCTAGTGCTAAGAACCAGTCAATTGCCATTCCTTTGGAAGAATTACCAAACAAGTTGCGGGGCATTGTCCGAAATGTAAAGAAACTAGAAGCTGAACTTTCGGCCATCAAGATTTCATATCTCAAGAAACTTAACAAAGGCTCCAATATCGTGATCTTGGGCTCGTACTCAGACTCAGCAAAAGCAGTTGCCAAAGCACTAACAAGCCTTGGCTTTAAGAACTCCTGGATTGTAACTGATGGGTTTTTAGGTAGCAAAGGTTGGTTACAGAGTCGGTTAGGAACAGATACATATAAGTTCTCATTCGCAGAGATCCTTTCACCATCCCGAGTCATCCCATCCGGAACCAAACGTTTCGGGATGACCTCACTTTCATCTGCATCTGGTCAAAAATTGCTTCCTGGTGCTGATTAA 1182 45.52 MAMKMAIRASAIPKHHPPPSLPSSSHRSDSKSQFRPISVSLPASTTLSLLALFSSPYQARALNKDQIVSSLNEVEKTFDQVQEIGSNFFDIAQQVIDSARNILKPGVDVALPIVKQAGEEALKVASPTISEASKKALEALEGSGIDTEPVLSAAKTVVGAAQQTGKVIEGAKPIASSTVETISTTDPLVIAEIAGVLALAYLLFPPIWSAISFNFRGYKGELSPAQTLDLISSSNYFLIDIRSEKDKDKSGIPRLPSSAKNQSIAIPLEELPNKLRGIVRNVKKLEAELSAIKISYLKKLNKGSNIVILGSYSDSAKAVAKALTSLGFKNSWIVTDGFLGSKGWLQSRLGTDTYKFSFAEILSPSRVIPSGTKRFGMTSLSSASGQKLLPGAD 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1267419 1270047 - Lsi02G001530.1 Lsi02g00153 654895

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00153 393 Coils Coil 268 288 - -
Lsi02g00153 393 CDD RHOD 226 340 - -
Lsi02g00153 393 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 221 340 IPR036873 -
Lsi02g00153 393 PANTHER CALCIUM SENSING RECEPTOR, CHLOROPLASTIC 5 391 - -
Lsi02g00153 393 ProSiteProfiles Rhodanese domain profile. 232 353 IPR001763 -
Lsi02g00153 393 MobiDBLite consensus disorder prediction 7 34 - -
Lsi02g00153 393 PANTHER RHODANESE/CELL CYCLE CONTROL PHOSPHATASE SUPERFAMILY PROTEIN 5 391 IPR044690 GO:0009704|GO:0071277|GO:0090333
Lsi02g00153 393 SMART rhod_4 222 350 IPR001763 -
Lsi02g00153 393 Gene3D - 219 358 IPR036873 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00153 - - - csv:101209180 670.618
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00153 Lsi-Chr2:1267419 Lsi08g01600 Lsi-Chr8:23957438 2.34E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g389 . . . . . . . . Cmo13g01091 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00153 Csa01g00637 Chy12g01465 Cme12g01908 . . . Bda14g00903 . Bpe15g00555 . . Sed01g2262 . . Cma13g01050 . Car13g00883 . Cpe09g01146 . Bhi08g01041 Tan05g2307 Cmetu03g1392 Lac10g0201 Hepe07g2429 . . Cla04g01122 Cam04g1175 Cec01g1687 Cco01g1735 Clacu04g1203 Cmu04g1182 Cre01g1480 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi05g00194 . 1218 1505 Sulfurtransferasese/Rhodanese AT1G79230 59.5 7.0e-105 377.5
Lsi05g00194 . 1218 1468 Sulfurtransferasese/Rhodanese AT1G16460 60.5 1.9e-84 309.3
Lsi02g00153 . 35 311 Sulfurtransferasese/Rhodanese AT5G23060 62.6 2.3e-89 325.9
Lsi02g01151 . 7 649 Sulfurtransferasese/Rhodanese AT1G09280 60.2 7.6e-219 756.9
Lsi04g01009 . 108 495 Sulfurtransferasese/Rhodanese AT2G40760 69.2 1.6e-150 529.6
Lsi03g01503 . 409 714 Sulfurtransferasese/Rhodanese AT1G17850 50.4 2.5e-92 336.3
Lsi03g02213 . 36 216 Sulfurtransferasese/Rhodanese AT3G08920 64.6 5.5e-66 247.7
Lsi06g01599 . 1 290 Sulfurtransferasese/Rhodanese AT4G24750 67.2 6.5e-110 394.0
Lsi10g01098 . 67 260 Sulfurtransferasese/Rhodanese AT5G19370 60.0 3.0e-62 235.7
Lsi05g00576 . 113 462 Sulfurtransferasese/Rhodanese AT5G55130 66.5 2.2e-131 465.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010320 1 1 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00153 Lsi_Chr02 FPKM 26.962345 28.773943 17.141041 18.909292 23.231363 19.814127 21.276907 17.988268 20.152111 18.979071