Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00155 ATGGGTGGTGGTAGAAGAAGAAAGAAGCAACATTTCAGAAGGATTCATGCCTTTCCTTGTGGTAGAGCTTCTTTTAAAGATGAACACTCTTTAATTGGAGGGCCAGGCTTCTCAAGGGTAGTTTACTGTAATGATCCTGATAGTTTTGAGGCCAGTCTTCTCAACTATGGAGGCAATTATGTCAAAACTTCAAAGTATACTATTGCTTCATTCTTCCCCAAATCATTGTTTGAGCAATTCAGAAGAGTTGCCAACTTGTATTTCCTCCTTTGTGCTTTGCTTTCCTTTAGCCCTCTTTCGCCGTATTCGCCGGTCAGCAATGTTCTTCCTCTTGTTGTTGTTATTGGAGTCACCATGGGCAAAGAAGCTCTTGAAGATTGGAGGAGAACCAAACAGGATATGGAGATGAATAACAGGAAGGTGAAAGTACATATTCGAGATGGTGAGTTTGTTGAGACTAAATGGATGGACTTGAAAGTTGGGGATGTAGTTAAAGTGGAGAAGGATGAATTCTTCCCTGCTGATCTCATTTTACTTTCATCGAGTTACGAGGAAGCGATTTGCTACGTCGAGACAATGAACCTTGATGGAGAAACAAATTTGAAGCTGAAAAACGCTTTAGAAGCAAGCTCAAACTTACACGAGGATTCGAGCTTTCAGAATTTCAAGGCTATAATAAAATGTGAAGACCCCAATGCAAATTTGTATTCCTTTGTGGGTAGTATGGAGCTTGAAGAGCAGCAACATCCACTCAGCCCTCAACAGCTTCTTCTTCGAGACTCGAAGCTTCGAAACACGGATTTTATATACGGGGTGGTGATTTTCACAGGTCATGATACAAAGGTTATTCAGAACTCAACAGATCCTCCTTCCAAGAGAAGCAAGATTGAGAAGAGGATGGATAAGGTTGTGTTCTTTCTGTTTGCTGTCTTGGTTTTGATATCAGTTGCTGGGTCAATTTTCTTCGGTGTTACGACTAGAGACGATATAGAAAACGGAAGAACTACGAGATGGTACCTTCGGCCAGACGATACCACAATATATTACAACCCCAAAAATGCTCCAGCTGCAGCAATATTGCAGTTTTTGACTGCTCTTATGCTTTTTAGCTATTTGATTCCCATATCATTGTATGTGTCCATTGAAATTGTCAAAGTTCTGCAGAGTGCCTTCATCAACCAAGATGAACATATGTACCATGAGGAAACTGATAAACCAGCTCATGCCCGTACCTCAAATTTGAATGAAGAGCTTGGCCAAGTTGACACCATTCTTTCCGATAAAACGGGGACATTGACTTGCAATTCGATGGAGTTTATCAAGTGTTCGGTGGGCGGGACTGCTTATGGGCGAGGAATTACAGAAGTTGAGCGAGCTTTTGCTAGAAGAAAGGAGTCAACTTTACCTCAAAACATAGGGGCCAACAATGCACGTCTTAGCAGCGAAAAACCGTTCATTAAGGGGTTCAATTTCAAGGATGAAAGAATAATGGATGGTAATTGGGTGAAGGAGCCTCGAGCCAATATAATCCAGAAGTTCCTACAGCTTCTGGCCGTCTGCCATACTGCATTGCCAGAAATTGATGAGGAAACTGGAAAAATTTCTTATGAAGCTGAATCACCAGATGAGGCAGCTTTTGTGATTGCAGCCAGAGAATTCGGTTTCGAGTTCTATGAAAGGACTCAGACAAGCATTTCATTGCGGGAGTTCGATCCGACCTCGGCCAAAATCGTTGAAAGATCATATCAACTTCTGGATATTTTGGAGTTTAATAGCACAAGAAAGCGGATGTCTGTGATTGTAAGGGATGCAAAGGGACAGCTACTACTACTTTGTAAAGGAGCTGACAGTGTTATGTTTGAAAGACTTGCAAAGAATGGAAGTGAGTTTGAAGAACAGACAAAGGTGCACATCAATGAGTACGCCGATGCTGGTTTAAGAACTTTGGTTCTAGCATATCGTGAGCTGAAAGAGGAGGAATTTAATACATTTCATCAAGAATTCATCAAAGCCAAAAACACAGTGAGCACAGATCGCGACGACATAATCGATCAGTTAACAGAAACCATTGAGAAAGATTTGATTCTTCTTGGTGCTACAGCAGTTGAAGATAAACTTCAAAATGGGGTCCCTGAATGCATCGACAAACTTGCTCAGGCTGGAATCAAAATATGGGTTCTGACTGGTGATAAGATGGAAACAGCCATCAACATTGGTTTACTTAGACAAGGAATGAAGCAAATAATTATCAGCTCAGAGACTCCGGAAGGAAAAGCTTTAGACAAAGTCGAAGATGTTCACAAATCCGCAGCTATCAAGTGTTCTTTTATAATGGAAACTCTTGTGTCGATTCAAAATCAATCTAATGTTCTTGCTGATTTTCAGGCGTTCAAGGCAAGTGTGACTCAACAAATAACTGATGCGAAAGCATTGCTTGTGTCCTCGAGCGAAACCCCAGAAACATTGGCTTTGATAATTGATGGAAAGTCCCTCACCTATGCTTTGGAGGATGATGTGAAGGACCTATTTCTGGAGCTTGCCATTGGTTGTGCTTCAGTTATATGCTGCAGATCATCTCCTAAACAGAAAGCACAAGTTACCCAATTGGTTAAGGTTAAAACAGGCAGCACAACTCTAGCAGTTGGTGATGGTGCAAACGATGTTGGAATGCTCCAAGAAGCGGATATCGGGATCGGTATTAGCGGTGTAGAAGGGATGCAGGCAGTCATGTCAAGTGACATTGCAATAGCACAGTTTCGATACTTGGAGCGGCTGCTCCTTGTGCATGGACATTGGTGTTACAGGAGGATCTCTTCCATGATTAACTTGCAACATTACAGTCTCAACATCATTTTAAGCTTGAAAATCGTTGATATATGTCGAACTGACCGCATTTTCTATATATGCTATTTCTTCTACAAGAACATTGTTTTTGGGTTCACTCTCTTCTTCTTTGAGATGTATGCATCATTCTCCGGCCAAGCTGTATACAACGACTGGTTCCTTTCGCTGTATAACGTCTTCTTTACTTCACTCCCTGTGATTGCATTGGGAGTATTCGACCAGGACGTCTCATCCCGGTACTGTCTCAAGGTAAGTTCAACGTCGCTATGTCTTATCGATCCAATCTTTTGCCTTATTGATCCAATCTTTTGCCTACCGTAA 3165 41.64 MGGGRRRKKQHFRRIHAFPCGRASFKDEHSLIGGPGFSRVVYCNDPDSFEASLLNYGGNYVKTSKYTIASFFPKSLFEQFRRVANLYFLLCALLSFSPLSPYSPVSNVLPLVVVIGVTMGKEALEDWRRTKQDMEMNNRKVKVHIRDGEFVETKWMDLKVGDVVKVEKDEFFPADLILLSSSYEEAICYVETMNLDGETNLKLKNALEASSNLHEDSSFQNFKAIIKCEDPNANLYSFVGSMELEEQQHPLSPQQLLLRDSKLRNTDFIYGVVIFTGHDTKVIQNSTDPPSKRSKIEKRMDKVVFFLFAVLVLISVAGSIFFGVTTRDDIENGRTTRWYLRPDDTTIYYNPKNAPAAAILQFLTALMLFSYLIPISLYVSIEIVKVLQSAFINQDEHMYHEETDKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVGGTAYGRGITEVERAFARRKESTLPQNIGANNARLSSEKPFIKGFNFKDERIMDGNWVKEPRANIIQKFLQLLAVCHTALPEIDEETGKISYEAESPDEAAFVIAAREFGFEFYERTQTSISLREFDPTSAKIVERSYQLLDILEFNSTRKRMSVIVRDAKGQLLLLCKGADSVMFERLAKNGSEFEEQTKVHINEYADAGLRTLVLAYRELKEEEFNTFHQEFIKAKNTVSTDRDDIIDQLTETIEKDLILLGATAVEDKLQNGVPECIDKLAQAGIKIWVLTGDKMETAINIGLLRQGMKQIIISSETPEGKALDKVEDVHKSAAIKCSFIMETLVSIQNQSNVLADFQAFKASVTQQITDAKALLVSSSETPETLALIIDGKSLTYALEDDVKDLFLELAIGCASVICCRSSPKQKAQVTQLVKVKTGSTTLAVGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRISSMINLQHYSLNIILSLKIVDICRTDRIFYICYFFYKNIVFGFTLFFFEMYASFSGQAVYNDWFLSLYNVFFTSLPVIALGVFDQDVSSRYCLKVSSTSLCLIDPIFCLIDPIFCLP 1054
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1273764 1280256 - Lsi02G001550.1 Lsi02g00155 654897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00155 1054 SUPERFAMILY HAD-like 420 936 IPR036412 -
Lsi02g00155 1054 SFLD C1.7: P-type atpase like 407 932 - -
Lsi02g00155 1054 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 108 223 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi02g00155 1054 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 847 950 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi02g00155 1054 Gene3D - 117 287 - -
Lsi02g00155 1054 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 496 699 IPR023299 GO:0000166
Lsi02g00155 1054 CDD P-type_ATPase_APLT_Dnf-like 58 1032 - -
Lsi02g00155 1054 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 4 952 - -
Lsi02g00155 1054 PRINTS P-type cation-transporting ATPase superfamily signature 425 439 - -
Lsi02g00155 1054 PRINTS P-type cation-transporting ATPase superfamily signature 881 900 - -
Lsi02g00155 1054 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 967 1033 - -
Lsi02g00155 1054 Gene3D - 543 697 IPR023299 GO:0000166
Lsi02g00155 1054 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 967 1033 - -
Lsi02g00155 1054 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 4 952 - -
Lsi02g00155 1054 Pfam Phospholipid-translocating P-type ATPase C-terminal 967 1032 IPR032630 -
Lsi02g00155 1054 Pfam Phospholipid-translocating P-type ATPase C-terminal 909 946 IPR032630 -
Lsi02g00155 1054 SUPERFAMILY Calcium ATPase, transmembrane domain M 48 1030 IPR023298 -
Lsi02g00155 1054 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 56 954 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Lsi02g00155 1054 SFLD p-type atpase 407 932 IPR044492 -
Lsi02g00155 1054 Pfam Cation transport ATPase (P-type) 532 623 - -
Lsi02g00155 1054 Pfam E1-E2 ATPase 136 377 - -
Lsi02g00155 1054 Gene3D - 698 921 IPR023214 -
Lsi02g00155 1054 ProSitePatterns E1-E2 ATPases phosphorylation site. 427 433 IPR018303 -
Lsi02g00155 1054 Pfam Phospholipid-translocating ATPase N-terminal 41 107 IPR032631 -
Lsi02g00155 1054 SUPERFAMILY Calcium ATPase, transduction domain A 143 284 IPR008250 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00155 Lsi-Chr2:1273764 Lsi09g01091 Lsi-Chr9:17328856 0 dispersed
Lsi04g00494 Lsi-Chr4:4565326 Lsi02g00155 Lsi-Chr2:1273764 1.18E-63 transposed
Lsi08g00624 Lsi-Chr8:14590144 Lsi02g00155 Lsi-Chr2:1273764 0 transposed
Lsi11g01706 Lsi-Chr11:25213447 Lsi02g00155 Lsi-Chr2:1273764 1.27E-19 transposed
Lsi02g00155 Lsi-Chr2:1273764 Lsi04g00308 Lsi-Chr4:3125165 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00155 K01530 K14802 csv:101209427 1780.76