Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00157 CCATTTGCTTTCTTCTTCCTCCTCCTCTCCTTCCATTTCTTCTCTGCAATTAGCATTGATTTCCTCGTCGGTGATGAAGATGGCTGGGCAGTCCCTAAACCAAAAGAAGCTGACAAATACAACAAATGGGCTTCCCACAACAGATTCAATATTAATGACACTGTCCATTTCAAGTACGAGAAAGATTCAGTGATGATGGTGACAGAGGAAGAGTACAAACAATGTGTTTCTTCAAAGCCTCTGTTTTATGAGAACAATGGAGACAGTGTTGTGAAACTTGACAGAGCAGGTTTGTTTTATTTCATTAGTGGGGTTTCAGGGCACTGTCAGAAAGGCCAAAGAATGATAATCAAAGTGTTGGAACCTATAAATCCTCCTCAGCCACCCACTGCTCCACCACATAGCAAGAATGCTGCAGCTTCTAATTTGCTCTCTGTTTCATCTTCAATCTTGGGAGTGTTCTTTGCTCTGTTTCTGTCCATTTGA 486 41.77 PFAFFFLLLSFHFFSAISIDFLVGDEDGWAVPKPKEADKYNKWASHNRFNINDTVHFKYEKDSVMMVTEEEYKQCVSSKPLFYENNGDSVVKLDRAGLFYFISGVSGHCQKGQRMIIKVLEPINPPQPPTAPPHSKNAAASNLLSVSSSILGVFFALFLSI 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1310933 1311656 - Lsi02G001570.1 Lsi02g00157 654899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00157 161 PANTHER EARLY NODULIN-LIKE PROTEIN 6 6 151 - -
Lsi02g00157 161 ProSiteProfiles Phytocyanin domain profile. 19 121 IPR003245 GO:0009055
Lsi02g00157 161 SUPERFAMILY Cupredoxins 19 120 IPR008972 -
Lsi02g00157 161 CDD OsENODL1_like 20 120 IPR041846 -
Lsi02g00157 161 Pfam Plastocyanin-like domain 36 113 IPR003245 GO:0009055
Lsi02g00157 161 Gene3D - 18 122 IPR008972 -
Lsi02g00157 161 PANTHER BLUE COPPER PROTEIN 6 151 IPR039391 GO:0009055
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00157 Lsi-Chr2:1310933 Lsi02g01618 Lsi-Chr2:22047984 6.12E-40 dispersed
Lsi02g00157 Lsi-Chr2:1310933 Lsi04g02065 Lsi-Chr4:27778890 7.36E-26 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00157 - - csv:101205884 252.677