Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00158 ATGTCACAGGATTCAGAGAAGAGATTCCATTCCATAATGGACAAGCTCTTTCAGAATGCACAAGCCACTCCAAACTCCAATTCCGCATCTTCCCCGTCCTCCTCCAGGCTGGCTAAACTTTGTGATTGTTCATCCTCTCATGATCCATCTGGTGTACAATTGTCAAGAGGGAAGAAACGGCCATATTCTTCGTCTGCCTTGGTAGTGGGAGAGCTGAGGTCAAAAAGTGATGTAATTGAGGCATTGCAGAAGCATTCTTCAGCTTCTGTTGGATCCTCTGATGCTCCATTGTGCAGGCCTTGGGACCGTGGAGATCTTTCGAAAAGATTAACCACATTCAAGTCAATGACATGGTTTGGTAAACCTAAGGTGGTAAATGCTATAAATTGTGCTAGAAGAGGTTGGGTCAATGTAGATATGGATACTATTGCTTGTGAATCGTGTGGAGCACGTCTCCTTTTCTCTACTCCATCTTCCTGGAATCAGCAACAAGTTGAGAAGGCCGCTTTGGTATTTAGCTTAAAGTTGGACAATGGGCACAAGTTACTCTGTCCCTGGATAGATAATGCCTGTGATGAAGCATTGGCTGATTTTCCTCCTACCCCTCCTCCAATTTTAGTTAATAAATTTAGGGAGCGTTATTCTATGTTACTACATCTTTCAGCTCTCCCTGTTATTTCGTCTTCATTTCTTAAATGGATGAAGAGTCCCCACCTCAAGCAATTTCTTGAAGAATTAACCTTGGAGGAATTTGGTAATGAGTCTCTTAACAAATCTGAAATCGAGTACCTAGGAGATGGACATGACTCAGATACTGCTAAAGTATATTATCAGGCTCTAAAGCTAATTAGCTTATTTGGATGGGAACCCCGTTCACTGCCCTATGTAGTTGACTGCAAAACAGGGTCAGATCAATCTCTCAAGAAATCCACCACTTTGGATTCACGTCCTACAGTCAATCTCCTCAATGCTACCACCACAGAAAATGTAGATGGGAATAGAATTACTGAGCTTTCAAGTGAACTGCAATCTCAGCCCAATTCTGTTGTTTTAGATTGCCGGCTCTGTGGAGCTAGCGTTGGATTATGGACTTTCCATACAATTCCTAGGCCTGTGGAGATCATCAGATTGGTTGGATCCACTGAATTAAACAGTGAGTCAGGCACTCATGATTCAGGCAATAAAAGTGTCATCAATCATGCAGGTATTGGTAATGTTGGCATTTCAAAGTTAACTTCAACAATTGCAGGGGGCCCTACCCCTGCACGACAGAGTTTCAAGGCCACCATCACTTTGCCTGTAATTGGCCAAAGTTTAAGGGCTAGGCTATTCAATGACGAAAAGTTTAGTGATGGGGTGTATAATGACCAAGAAATGGTCCAAGCTGATTCCTCGGATAAAATTATGTTACAGAATAGCAAATGCAATGAAGATACCACCCTTACTGAACAAATTGATCAGCCAGAAAACATAAAATTGTTACAGAATCAAACACTTGATCCTGGATGCAGTACTTCTGGTGATGATCAGACCCCTTTGTTGGAAGGTACGGATGTTACTGATCAGGGAGCCTTACCTGAATCTAGTTTGAATGGTTCAACTGAAGAAACTCAAGTAAAGAGGACAGAAATTGTTCCTGCGCAGAATATTGAAGTGTTGGAGAATGCTGAGAATTCAATACAGTCGGATACTGGTAACAGATCAGCAGACCTGCATCCCTTACCTTCTCCAGTCGAAAATCCTTTGACATCAACAGATGCTGTTATGATCACAAGTAGTGAATGCAATGAAAAGGAGTTGCCTTCTGACGTCTCTGACCAATGTGATTCACAACAGGTTTCAGAAAATGATACTTCAAATAGAAAAGAGGTTTCTTTGGCCGACTCACAGGTGACCCCATGTAAATCCTCATGCCTTGAAGTTGATACAAATACAGATATTGCCAATAGGAACGAATCAATTAAAGACAAAGTTGGTTCTGATAACCACACCACCTCAGAAAACCAGGACCGTGAAGGAGGTGACACCAATGACAAAGTGCATACCTCTGTGAACAGCGAGCATATTGCCCGTGGTGGAGGTACCAGTTACCACATGCTCTTAATCCTTCTTTTTCAACAAATGGTGGAGCATATTTATAGATTCTCTAGTTATCATAACCATAGCCATAGATACTCGGTGGCTTTGTGCTTTAATTCAGTGAAGAGAGCTATTTCCCCATGCATGCCTGAACAGGATTATTCCAAGGGTCTATCATTGGGTAGTATAATGGAGTTCGATCCAATCAGGCAGCACAGATATTTTTGCCCGTGGATTGCCACAGGAAATGTCGCACCTGGATGGAAACAAACCCTAACTGCTCTACAGCGTGGAAAAAGCTCTTCACCACATTCACCTAGGAACTCTCCATCAGCGTCCCTCATTAAGGTCGATGACCCCGTTACATCGGTTCGAAATCTATTCACGTCTTCTGCGAAGAAATTGAAAAGCAGTCTAGTTTCTAACGAGAGCACCAAGCATTAG 2523 42.49 MSQDSEKRFHSIMDKLFQNAQATPNSNSASSPSSSRLAKLCDCSSSHDPSGVQLSRGKKRPYSSSALVVGELRSKSDVIEALQKHSSASVGSSDAPLCRPWDRGDLSKRLTTFKSMTWFGKPKVVNAINCARRGWVNVDMDTIACESCGARLLFSTPSSWNQQQVEKAALVFSLKLDNGHKLLCPWIDNACDEALADFPPTPPPILVNKFRERYSMLLHLSALPVISSSFLKWMKSPHLKQFLEELTLEEFGNESLNKSEIEYLGDGHDSDTAKVYYQALKLISLFGWEPRSLPYVVDCKTGSDQSLKKSTTLDSRPTVNLLNATTTENVDGNRITELSSELQSQPNSVVLDCRLCGASVGLWTFHTIPRPVEIIRLVGSTELNSESGTHDSGNKSVINHAGIGNVGISKLTSTIAGGPTPARQSFKATITLPVIGQSLRARLFNDEKFSDGVYNDQEMVQADSSDKIMLQNSKCNEDTTLTEQIDQPENIKLLQNQTLDPGCSTSGDDQTPLLEGTDVTDQGALPESSLNGSTEETQVKRTEIVPAQNIEVLENAENSIQSDTGNRSADLHPLPSPVENPLTSTDAVMITSSECNEKELPSDVSDQCDSQQVSENDTSNRKEVSLADSQVTPCKSSCLEVDTNTDIANRNESIKDKVGSDNHTTSENQDREGGDTNDKVHTSVNSEHIARGGGTSYHMLLILLFQQMVEHIYRFSSYHNHSHRYSVALCFNSVKRAISPCMPEQDYSKGLSLGSIMEFDPIRQHRYFCPWIATGNVAPGWKQTLTALQRGKSSSPHSPRNSPSASLIKVDDPVTSVRNLFTSSAKKLKSSLVSNESTKH 840
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1313438 1319208 + Lsi02G001580.1 Lsi02g00158 654900

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00158 840 MobiDBLite consensus disorder prediction 788 809 - -
Lsi02g00158 840 MobiDBLite consensus disorder prediction 561 582 - -
Lsi02g00158 840 MobiDBLite consensus disorder prediction 16 43 - -
Lsi02g00158 840 Pfam C3HC zinc finger-like 100 225 IPR012935 GO:0008270
Lsi02g00158 840 MobiDBLite consensus disorder prediction 649 681 - -
Lsi02g00158 840 MobiDBLite consensus disorder prediction 788 810 - -
Lsi02g00158 840 MobiDBLite consensus disorder prediction 1 43 - -
Lsi02g00158 840 MobiDBLite consensus disorder prediction 596 628 - -
Lsi02g00158 840 MobiDBLite consensus disorder prediction 497 540 - -
Lsi02g00158 840 PANTHER NUCLEAR-INTERACTING PARTNER OF ALK 1 827 - -
Lsi02g00158 840 MobiDBLite consensus disorder prediction 605 628 - -
Lsi02g00158 840 PANTHER NUCLEAR-INTERACTING PARTNER OF ALK 1 827 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00158 - - - csv:101206120 1278.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00158 Lsi-Chr2:1313438 Lsi02g00917 Lsi-Chr2:8816053 3.87E-57 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g375 . . . . . Bpe13g00337 Bma06g00005 . Cmo13g01086 . . . . . . Cpe20g00103 . . . . . . . . . . . . . . . . Cone16ag0270 . . Lsi02g00158 Csa01g00643 Chy12g01459 Cme12g01899 . . . . . . . . Sed08g2160 . . Cma13g01045 . Car13g00878 . . . Bhi08g01035 Tan05g2298 Cmetu12g0465 Lac10g0210 Hepe07g2419 . . Cla04g01115 Cam04g1168 Cec01g1679 Cco01g1727 Clacu04g1196 Cmu04g1175 Cre01g1474 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010799 0 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00158 Lsi_Chr02 FPKM 2.519324 1.972629 0.238236 0.0 0.0 2.557777 1.041584 6.054978 2.949847 4.553955