Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00164 ATGTATCACCATTCCTTTCAGGTCTTGAGCAAGGACAATCCTCCCTGCAAAACTTATGTGTATCGGGTAGACATCCCCGTCAATGCACATTGGATATCACTTGCCGTTGGACCGTTTGAAATCCTTGCTGACCATCAAAATGGACTTATATCACACATGTGCTCACCCGTTAACTCTTTAAAGCTCAAGCATACGGTGGAATTTTTTCATAGTGCATTCAGTTGCTATAAGGATTACCTCTCGGTGGACTTTCCATTTGGGTCATACAAACAAATCTTCATAGAGCCGGAGATTGCAGTATCATCAGCATGTTTAGGAGTTTCCATGTGTATATTTAGTTCTCATCTTTTGTTTGATGAGAAAATCATTGATCAGACCATAGATACGAGGATTAAACTTGCTTATGCTCTGGCAAGACAGTGGTTTGGCATTTATATTACGCCTGAAGCCCCAAATGACGAGTGGTTGTTGGATGGTCTTGCTGGTTTCTTGACTGATTTATTTATCAAGAAGAACTTGGGAAATAATGAGGCACGCTACCAAAGATACAAGGCCAATTGTGCTGTTTGTAGAGCAGATGATAGTGGTTTGACCACCTTGAGTTCCTCTTCTGCTTGCAAAGATTTGTATGGGACCCAACGTATTGGTATATACGGAAAAATAAGATCATGGAAGTCTGTGGCAATCCTTCAAATGTTGGAAAAGCAGATGGGGCCTGAGTCTTTCCGCAAGTTTCGTCAATTGGCCAATAAGATTGGAAACCTTGAGCGACCATTTCTTAAAGAGTTCTTTCCTCGGTGGGTAGAATCATGTGGTTGTCCGATGCTGAGGATGGGATTTTCGTACAACAAGCGGAAAAATATGGTTGAAATGGCGGTGTCACGGGAATGCACGGTTACACCAGCCACAAGTGTAGAAAATCGGGACAGTGATGCTGGATGGCCTGGTATGATGAGTATCAGGATTTATGAACTTGATGGTGTGTTTGATCATCCAGTTCTTCCAATGACTGGAGAGTCTTGGCAGCTACTAGAAATACAATGCCACTCCAAACTTGCTGCTAGACGCCTCCAGAAAACTAAAAAGGGATCAAAACCTGATGGTTCTGATGACAATGCTGATATACCTGCACTCGACATTCGCTCTAGTGTGGAATCTCCTTTGTTATGGTTGAGAGCAGACCCTGAGATGGAATACCTTGCTGAAATTCATTTTCATCAACCTGTTCAGATGTGGATCAACCAATTGGAGAAGGACAAGGATGTCATTGCTCAAGCGCAAGCAATCGCGACATTAGAGATGTTGCCTCAACCATCTTTTTCTGTTGTTAATGCTCTTAACAATTTCCTCAGAGACCCCAAGGCCTTCTGGAGAGTAAGAATTGAAGCAGCATTGGCAATGGCCAAAACAGCCTCAGAGGATACTGATTGGGCTGGTTTGCTTAATTTGATTAAATTTTTTAAAAATCAGAGGTTTGATGCAGATACCGGACTCCCCAAGCCAAATGAATTTCGTGATTTTCCTGAGTATTTTGTTCTTGAGGCCATTCCTCATGCTGTTGCTATGGTCAGAGCCACCGACCAGAAAAGCCCTAGAGAAGCCGTTGAGTTTGTTTTGCAACTTTTGAAGGGTCAGGCGGGTTGTCCCGTGAGATTAGTCGAGGTGCGCTACAATGACAACAATGGGAATCCTTACTCTGATGTTTTCTGGTTGGCTGCACTAGTCCAGTCAATTGGTGAGCTTGAATTTGGGCAACAGACCATTCTCTTTTTGGCATCGCTTCTTAAAAGGATTGATAGACTTTTGCAGTTTGACAGGCTGATGCCTAGCTATAACGGGATCTTGACTATTAGCTGCATCAGAACCTTAACCCAGATTGCACGGAAACTATCTGGACTTCTCTCTCTTGATCGTATCTTTGAACTGATACGACCTTTTCGAGATTTTAATTCCACGTGGCAAGTTCGAATTGAGGCAACCCGAGCACTTCTTGATCTTGAGTACCATTGCAACGGAATTGATGCAGCATTGTTATTGTTTATTAAATATCTAGAAGAAGAGAATTCCTTGCGAGGGCAAGTGAAGCTGGGGGTCCATGTTATGCGTTTATGTCAGATAATGAGAAGATCTGATTCAAATGATGTAGTCAATAATGACACTCTTGTTGCTTTGCTCCTCCTACTTGAAGGCCACATGGCGTTTAACAATGTCCATCTTCGTCACTACTTGTTCTGTATTTTACAAGTCCTTGCAGGAAGGCCCCCAACACTTTATGGAGTTCCTAGAGAATATAAAACATTGCATATGGGTGACACGGGAACTTGCAGTGAACAGAAGAGGATGCTAACTTCTCTCATTCCTGAATTCAATCCACCAGAACCATCATCAGTCTCTGCAGTGGCGCCTATGCCGTGTATTCCAGCAACTCTGTCATCAGAACCACTTCATACTCCCAAACTGAGGCCTGACAGTTTGGTAATTCCCGAGCTTTCCAAGGAAGGAGGAGCAATTGCAGAGGTTCCTAAGCAAGCTATGGCAATAGCCGAAGCTCCCAGAGAAGCAGCTTCTGTTTCCAATAGTCATGAGAGGAAGTTGCCGGTTGTTAAGATCAAAGTCAGATCATCTGCTGCTACAAGTAGAGCAGATGCTGATAATCTAACCACTGAAAGATCTCATGCTGCACCCCGTGAAACAGATGTTGGTCCTAGTAGTTCTGTTTCTGTTGATGCACCCCAAAGAAATATTGCCGAGGCTACAAGTATCAGCAACCATATTCTGGAGGAGGTTAACTCCTGTCATGATCGCGGGTCTCACATGACAGCCAGCATTGGCAGTGCAAAACTTATGAGTTATGGTGACGAACTCGAGAAGGAGTTCCAGTGCACTGCCGATTCCAGTAGGGCTTTTGGACATTTTCAGCTAGAAGATCCTTCATCATCGAGCATCATACAAGATAACAATATTGATGCTGATGCACAGAAGTACGCAAGTCTTCAGACACTTTCTTTACCACAGCATGATCATGGCTTAGCCTCTTCGCACTCCCGTCATGGGAAAAAGGAAAAGAAGAAAGACAAAGAAAAGAAACGTAAACGAGAAAGTCATAAAGAACATCGCAACGATCCTGAATACATCGAGCGCAAACGACTGAAGAAAGAGAAGAAACAAAAAGAAAAAGAGATGGCAAAGCTATTGAATGAAGAGGTGAAGCCACTGCCACTTGCTATGCCTCGTATTAAAGAACCACCAACCAAGTCAACACCTGTGCGGCTGGAAACAAACGAACCTAGCGGATCGAGATTAATTGTAGGAGTCCATAGTAAGCCTGAGGCATCAGAAGGTACTACTTCTGCTGCCCCCAAACTTAGAATTAAATTCAAAAATCGGACGCTGAACAATTTGTAA 3405 43.35 MYHHSFQVLSKDNPPCKTYVYRVDIPVNAHWISLAVGPFEILADHQNGLISHMCSPVNSLKLKHTVEFFHSAFSCYKDYLSVDFPFGSYKQIFIEPEIAVSSACLGVSMCIFSSHLLFDEKIIDQTIDTRIKLAYALARQWFGIYITPEAPNDEWLLDGLAGFLTDLFIKKNLGNNEARYQRYKANCAVCRADDSGLTTLSSSSACKDLYGTQRIGIYGKIRSWKSVAILQMLEKQMGPESFRKFRQLANKIGNLERPFLKEFFPRWVESCGCPMLRMGFSYNKRKNMVEMAVSRECTVTPATSVENRDSDAGWPGMMSIRIYELDGVFDHPVLPMTGESWQLLEIQCHSKLAARRLQKTKKGSKPDGSDDNADIPALDIRSSVESPLLWLRADPEMEYLAEIHFHQPVQMWINQLEKDKDVIAQAQAIATLEMLPQPSFSVVNALNNFLRDPKAFWRVRIEAALAMAKTASEDTDWAGLLNLIKFFKNQRFDADTGLPKPNEFRDFPEYFVLEAIPHAVAMVRATDQKSPREAVEFVLQLLKGQAGCPVRLVEVRYNDNNGNPYSDVFWLAALVQSIGELEFGQQTILFLASLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIARKLSGLLSLDRIFELIRPFRDFNSTWQVRIEATRALLDLEYHCNGIDAALLLFIKYLEEENSLRGQVKLGVHVMRLCQIMRRSDSNDVVNNDTLVALLLLLEGHMAFNNVHLRHYLFCILQVLAGRPPTLYGVPREYKTLHMGDTGTCSEQKRMLTSLIPEFNPPEPSSVSAVAPMPCIPATLSSEPLHTPKLRPDSLVIPELSKEGGAIAEVPKQAMAIAEAPREAASVSNSHERKLPVVKIKVRSSAATSRADADNLTTERSHAAPRETDVGPSSSVSVDAPQRNIAEATSISNHILEEVNSCHDRGSHMTASIGSAKLMSYGDELEKEFQCTADSSRAFGHFQLEDPSSSSIIQDNNIDADAQKYASLQTLSLPQHDHGLASSHSRHGKKEKKKDKEKKRKRESHKEHRNDPEYIERKRLKKEKKQKEKEMAKLLNEEVKPLPLAMPRIKEPPTKSTPVRLETNEPSGSRLIVGVHSKPEASEGTTSAAPKLRIKFKNRTLNNL 1134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1357907 1370584 + Lsi02G001640.1 Lsi02g00164 654906

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00164 1134 MobiDBLite consensus disorder prediction 1006 1121 - -
Lsi02g00164 1134 MobiDBLite consensus disorder prediction 360 374 - -
Lsi02g00164 1134 Coils Coil 1045 1070 - -
Lsi02g00164 1134 Pfam Peptidase family M1 domain 67 245 IPR014782 GO:0008237|GO:0008270
Lsi02g00164 1134 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 7 1067 IPR037813 GO:0005669
Lsi02g00164 1134 SUPERFAMILY ARM repeat 413 693 IPR016024 -
Lsi02g00164 1134 MobiDBLite consensus disorder prediction 1013 1033 - -
Lsi02g00164 1134 MobiDBLite consensus disorder prediction 357 376 - -
Lsi02g00164 1134 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 54 276 - -
Lsi02g00164 1134 MobiDBLite consensus disorder prediction 1034 1066 - -
Lsi02g00164 1134 MobiDBLite consensus disorder prediction 872 911 - -
Lsi02g00164 1134 Gene3D Neutral Protease Domain 2 43 268 IPR027268 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00164 K03128 TAF2; transcription initiation factor TFIID subunit 2 - csv:101210662 1994.93
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00164 Lsi-Chr2:1357907 Lsi04g01408 Lsi-Chr4:21837951 7.37E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g367 . . . . . . . . Cmo13g01082 . . . . . . Cpe20g00107 . . . . . . . . . . . . . . . Cone2ag0646 . . . Lsi02g00164 Csa01g00648 Chy12g01454 Cme12g01894 . . . Bda14g00912 . Bpe15g00546 Bma03g00887 . . . . Cma13g01041 . Car13g00873 . . . Bhi08g01209 . . Lac10g0216 . . . Cla04g01110 Cam04g1162 Cec01g1673 Cco01g1719 Clacu04g1190 Cmu04g1170 Cre01g1467 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010321 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00164 Lsi_Chr02 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0