Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00165 ATGAATAGTAGTAATACCAAAAATGGCCATGACCCATTTTGTAATTTGCCTCATCTTGACCATTCATTTCATCTTCCCATCTCTTTCTTCCCCTTTCCTTCTCCATTTGAGGTTGATGATCGTCAAGAAGATGATATTCTCAATTTCACTACTAATTCTTCTTCTTCTTCTCAAAATTATAATAATAATCCTCCTATTATTTCCACAAATAACAACACTCCTTCTCTTGACAAAATTCTTCCCACAAATTCAGATCAAAAGAAGAAGATGATGAAGAAAATCCCACCAAGAAAAAGATTGTCAAAAAAAGATAGACATAGCAAAATCACAACAGCTAGAGGAGTAAGAGATAGAAGAATGAGGCTTTCACTCCCAGTGGCTCAACAATTCTTTGGATTACAAGATTTGTTGGGTGTTGACAAAGGAAGCAAAACAGTTGAATGGTTGTTGATTCAAGCCAAGCCTGAAATTTTGAAACTTGCAAGAGAAAGATCATCAAATCATTCCATGATCATCATGAGTAATAATAATGCTTCTTCTTCTAATTATTCAGCTTATTCCAATTCTTCAGAGCTTGATGAAGTTGGAGTTATTATTGGTGATCAAAATTTGAACACCAATGATAATAATAATATCAAAATTAAGAAGAAGAAGAAGAAGAAGATGAGAGCCAACAAACAGCTGCCAAGGAAAACCATGGATAAAGAATTGAGAGAAAAGGCTAGAGAAAGAGCAAGAGCAAGAACTTTGGAGAAGAAAAACCAGATCTTTATTAAGGATTCTTGTTCAGATCATCCAAATTTCTCCAAAATTATTTCATCTTCTTCTTGGAGCAGTCCTTTTGAAACTACTGGTGGGGAGGAATCAGCTGGTACTCAAAGCTACAATAATAATAATAATCATCATCTCAATCTTCCCATTGAGGTTCAAAAACCAATCACTAATTCCCAATTTGATTACCAATTCCACCAAAATTTTTCTTCTTTTGATATTATTTTGCCAAAGTGGAGCCCATCTGATGATTCAACTTTCAATTTTCTGCATCAACAGCATGAATTTGAAGACTCTGATATCTTTGGATAG 1083 34.07 MNSSNTKNGHDPFCNLPHLDHSFHLPISFFPFPSPFEVDDRQEDDILNFTTNSSSSSQNYNNNPPIISTNNNTPSLDKILPTNSDQKKKMMKKIPPRKRLSKKDRHSKITTARGVRDRRMRLSLPVAQQFFGLQDLLGVDKGSKTVEWLLIQAKPEILKLARERSSNHSMIIMSNNNASSSNYSAYSNSSELDEVGVIIGDQNLNTNDNNNIKIKKKKKKKMRANKQLPRKTMDKELREKARERARARTLEKKNQIFIKDSCSDHPNFSKIISSSSWSSPFETTGGEESAGTQSYNNNNNHHLNLPIEVQKPITNSQFDYQFHQNFSSFDIILPKWSPSDDSTFNFLHQQHEFEDSDIFG 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1386697 1388257 - Lsi02G001650.1 Lsi02g00165 654907

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00165 360 ProSiteProfiles R domain profile. 235 252 IPR017888 -
Lsi02g00165 360 MobiDBLite consensus disorder prediction 85 108 - -
Lsi02g00165 360 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 33 315 IPR005333 GO:0003700
Lsi02g00165 360 PANTHER TRANSCRIPTION FACTOR TCP18 33 315 - -
Lsi02g00165 360 Coils Coil 233 253 - -
Lsi02g00165 360 ProSiteProfiles TCP domain profile. 102 160 IPR017887 -
Lsi02g00165 360 MobiDBLite consensus disorder prediction 91 106 - -
Lsi02g00165 360 Pfam TCP family transcription factor 101 254 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00165 - - - csv:105434786 375.555
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi02g00165 Lsi06g01349 CCT
Lsi02g00165 Lsi06g01349 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00165 Lsi-Chr2:1386697 Lsi09g00602 Lsi-Chr9:6568549 1.11E-20 dispersed
Lsi02g00165 Lsi-Chr2:1386697 Lsi04g00294 Lsi-Chr4:2969222 2.91E-17 wgd
Lsi02g00165 Lsi-Chr2:1386697 Lsi06g01349 Lsi-Chr6:24096487 1.48E-34 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g365 . . Bda06g00492 Bda15g00655 Bpe12g00499 . . Bma12g00942 Cmo13g01080 . Cma10g00251 . Car10g00238 . Sed08g0332 Cpe20g00287 . Bhi02g00003 Tan09g1947 Cmetu02g0652 . . . . Cla06g01487 Cam06g1641 Cec06g1701 Cco06g1699 Clacu06g1607 Cmu06g1556 Cre06g2369 . . Cone13ag0300 . Lsi02g00165 . Chy12g01453 Cme12g01893 . Blo15g00364 . . Bpe07g00732 . . . Sed08g2165 Cmo10g00270 . Cma13g01039 . Car13g00871 . . Cpe18g00742 Bhi08g01210 Tan05g2291 Cmetu12g0125 Lac10g0217 Hepe07g2413 . . Cla04g01109 Cam04g1161 Cec01g1672 Cco01g1718 Clacu04g1189 Cmu04g1168 Cre01g1466 Lsi06g01349 Csa01g00361 Chy02g02382 Cme02g01766
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013812 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 0 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24741 PF03634 TCP 7.80E-39 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00165 Lsi_Chr02 FPKM 1.547486 1.981424 31.452862 37.673141 5.699201 5.091774 4.677764 1.953475 2.222095 1.983407