Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00171 ATGGCTCGGATCTTTGAGTATTTCGTGGTTTGTGGGATCGGGCCGGAGATTCGGACTCTAGATGGGAACAAGGGATTTCATGGAGTCAGTTACTTGTATCTACCCTCTCTTCTCGACCAGTATCCTCCTTCCAACAATTCTCGTTGTCCTCCTCCACCACCTCAGCTTCCAACGTGTGTTCTACCAGCCGGGGTCGAGTTTTTTTCATCGGGATTTGATTCCACTGACGCCTGCACTTTTCCGCGGAGTTATCCGATTGTTTTGACGGAGGGCGATGGATCAAAAATTTATGTCAGTTGCATTGCTTTTAGAGACCCTGTTTGTGAGGACATTGCCGAAGCTTACCGCATTCCACCAAATTCTTATGCTGATAAATGTATCTGTATTGTTTCGCGTTCACCCAGCTTCCGTGTCCTTAAAGATGCGTTGGAGGAATTGTTTGCTTTGTGCTTCTCCAGCAGTGGAAGTAGCAAGCCTCTGTGGGATATCATAGCACACATGGTCTCCAATGTACCACTGTCTACTCCTGGGAAGGATCGGATTTTGTTTGGCATTGAGAATTGCCTTCTTTCCGTACAGGCTCCATCCAAGGATGGGCTTCCCTATGCTGATATTTCATTTCAGCCGCTTATGCAGTGCTTGGATTTGGAAAATGTAATCAAACTTTTCACTGCTGTCTTGCTGGAGAGGAGGATTCTTCTTCGATCAAACAAGTATTCACTTTTAACTCTTGTATCAGAAGCCATTTGTCATTTAATATATCCATTTAGATGGCAGACTCTAACCCAAGCTTTCTATGTTGTCCTGAAGCATGTCTACATTCCGTTACTCTTTTTCAGTGGAGTAGACTATATTGATGCTCCCACACCATATATGATGGGTCTTCATTCAGGCGTTGATACATCCTATCTGGCAATGGATGGTGTTGTTGTAGTGGACCTTGAGTTTAATTGCATCACAACTACTGAGGAAATACCACCTATTCCAGAACCAGAACTCGGATCTTTGCGTAACGAGCTGATGAAGTTATTATATCCCAATGTTGTTAGCATAGATCAAATGAGGTCTGATTTGCGTAGCGCATCTGAGCAGTACCCTAGAGGTAGCAGCAAACCTTGGGGAGAAGACCATGACCTTCAGCTTAGGTTGATATTTTTAAAATTCTTTGCATCACTCTTAAGTGGCTATCGCAATTTTATAGAAAACAATGCTACTGATGTCTTCAATACACAAGCATTCTTGAAGAAGCGTTCGCGATCAACTAATCAACCAGAAGATCCCATGATAACTCAGTTCCTGGAGTCCCAAGGGTTTTTAGACTATCTAGAGAGATGCATAGGTCCCGGTGAAAGTAATAATAATATTCTTGACAAGTTACAAGATGCACTTGGGAGGGGTCAAAATCCTCTTTCAATTCTTCCGTCATTGGTTGAACCTGAGATCATAACAATCTCTGACCCTGAGTTGGGAACATCAGGTTCTGGTGCCAAGTACACTTATGATAGATTTCCTTCGAACATCAGAACTGAGGAGCAGGAAGAAAAGAGAAAACAGATTCTAGCAGCAGCGAGTGGAGCTTTTGAATACTCTGGAAAACATAATCCTAATTCACCTTCTATGCTGATGGGTAAGGATCTGAAAGCAGAAAGCCTCAGTCCAATGGAGAGACAGGCCGAAAGAGATCGCATGGTTTTGGACATAAAAGTCAAGCTGCAGGGTCTCTGGCTACGTCTTCTGAAACTGGGTGCAACTGATGATCCTCTTTCTTCTTTTGAATACGGCACTATTCTTGCTTTGATTGAGTCTGATGCAGAGGGAATTGGTGGTAGTGGGTTTGTTGAGTGTATTAGAGAGCACATAAATACAGGATGGCTTTGTCAGTTAACCGATGAACAATTTATTGCTGTGAAAGAATTGCTAAAAACAGCAATCAGTCGTGCAACTTCACGAAATGATATATTGACAATTAGGGATGCCCTTGAAGTGTCTGGTGAAATGTACAAGAAAGACCCTAATAATGTTCCTGATTACATCCAACGCCATCTTATTTCTCTATCTATATGGGAGGAGTTAAGGTTTTGGGAAGGTTATTTTGATTATTTGATGGAACGGTCTTCAAATAAAACCGCCAATTATGCATCTCTGGTTTCTGCACAGCTAATTGTTATGGCATCGCATATGGCTGGGCTTGGGCTTCCTGACACTGATGCTTGGTACATGATTGAGACGATTGCGGAGAAAAACAGCATTGGATACAAGCAACTCATAAAGCTCCGAGGTTTCTTATCCCATATCCAGCAGCTGCGCATTAGTTATTGGGGACTCTCTTCAGTTAAGTCTCAATCCATATCTGCCCATGCATTGCCATCTCCGCGTCCCAAAGATGGATCTGATCAGAATCAGCAACCTGCTGAGGCTTCTGTTGTTGGAAGAAGCTGGGTTCAGAGCATGTTCAGCAGAGATACATCTGCAAGGATGTTGGGTCGTAGTGGCCGTTGGTCTTCTGATGCCACAGGTGAGAGTGGTACTCCTCAAAGACAGGATTTATCCACAGCTGGGCAGAAAAAAGTTCAAAGCAATATTCGCGTTCTTAGGGGTCATAGTGGAGCTGTGACGGCACTTCATTGTGTTACGAAAAGGGAGGTGTGGGACTTGGTGGGAGACCGTGAGGATGCAGGTTTTTTCATCAGTGGAAGCACGGACTGCTCGGTCAAGATATGGGATCCAAGTCTTCGTGGTTCTGAATTGCGAGCAACGTTAAAGGGTCACACAGGACCTGTTCGTGCAATTAATTCTGATCGAGGAAAAGTAGTTTCTGGGTCTGATGATCAGTCAGTTATTGTATGGGATAAGCAAACAACCCAGCTTCTAGAAGAGCTGAAAGGCCACGATGCACAGGTCAGCTGTGTGCGTATGCTATCAGGTGAACGTGTCCTTACCGCTGCGCATGATGGAACTGTGAAGATGTGGGATGTCAGAACTGATACTTGTGTGGCAACTGTTGGTCGTTGCTCTAGTGCAGTTCTATGCATGGAATATGATGACTCTACGGGAATATTGGCTGCTGGTGGTAGAGATACAGTAGCAAATATATGGGACATCCGTGCTGGCCGGCAAATGCACAAGCTTTTAGGTCATACGAAATGGATACGCTCAATAAGAATGGTAGGAGACACCATAGTTACTGGTAGTGATGATTGGACCGCTAGATTGTGGTCTGTTTCTCGAGGAACATGTGATGCTGTTCTAGCATGCCATGCTGGCCCAATATTGGCCGTTGAGTATTCTACACTGGATAAAGGAATAATAACTGGTTCAACTGATGGACTTCTCCGTTTTTGGGAAAATGAGGATGGGGGTATTAGATGTGTAAAGAATGTCACCATTCATAGTGCTGCCATACTGTCCATCAGTGCTGGGGAACATTGGTTAGGAATTGGAGCGGCAGATAACTCTATGTCTCTCTTTCATCGGCCGCAAGAAAGACTCGGTGGCTTCTCTAACACGGGTGCAAAAATGGCTGGATGGCAACTGTACAGAACCCCACAAAAGACTGCAGCCATGGTACGATGTGCATCTTCAGACCTCGAAAGGAAACGAATATGCACCGGCGGCCGTAATGGCCTTCTGAGGCTCTGGGAAGCAACAATCAACATCTGA 3660 44.51 MARIFEYFVVCGIGPEIRTLDGNKGFHGVSYLYLPSLLDQYPPSNNSRCPPPPPQLPTCVLPAGVEFFSSGFDSTDACTFPRSYPIVLTEGDGSKIYVSCIAFRDPVCEDIAEAYRIPPNSYADKCICIVSRSPSFRVLKDALEELFALCFSSSGSSKPLWDIIAHMVSNVPLSTPGKDRILFGIENCLLSVQAPSKDGLPYADISFQPLMQCLDLENVIKLFTAVLLERRILLRSNKYSLLTLVSEAICHLIYPFRWQTLTQAFYVVLKHVYIPLLFFSGVDYIDAPTPYMMGLHSGVDTSYLAMDGVVVVDLEFNCITTTEEIPPIPEPELGSLRNELMKLLYPNVVSIDQMRSDLRSASEQYPRGSSKPWGEDHDLQLRLIFLKFFASLLSGYRNFIENNATDVFNTQAFLKKRSRSTNQPEDPMITQFLESQGFLDYLERCIGPGESNNNILDKLQDALGRGQNPLSILPSLVEPEIITISDPELGTSGSGAKYTYDRFPSNIRTEEQEEKRKQILAAASGAFEYSGKHNPNSPSMLMGKDLKAESLSPMERQAERDRMVLDIKVKLQGLWLRLLKLGATDDPLSSFEYGTILALIESDAEGIGGSGFVECIREHINTGWLCQLTDEQFIAVKELLKTAISRATSRNDILTIRDALEVSGEMYKKDPNNVPDYIQRHLISLSIWEELRFWEGYFDYLMERSSNKTANYASLVSAQLIVMASHMAGLGLPDTDAWYMIETIAEKNSIGYKQLIKLRGFLSHIQQLRISYWGLSSVKSQSISAHALPSPRPKDGSDQNQQPAEASVVGRSWVQSMFSRDTSARMLGRSGRWSSDATGESGTPQRQDLSTAGQKKVQSNIRVLRGHSGAVTALHCVTKREVWDLVGDREDAGFFISGSTDCSVKIWDPSLRGSELRATLKGHTGPVRAINSDRGKVVSGSDDQSVIVWDKQTTQLLEELKGHDAQVSCVRMLSGERVLTAAHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDTVANIWDIRAGRQMHKLLGHTKWIRSIRMVGDTIVTGSDDWTARLWSVSRGTCDAVLACHAGPILAVEYSTLDKGIITGSTDGLLRFWENEDGGIRCVKNVTIHSAAILSISAGEHWLGIGAADNSMSLFHRPQERLGGFSNTGAKMAGWQLYRTPQKTAAMVRCASSDLERKRICTGGRNGLLRLWEATINI 1219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1437763 1451898 - Lsi02G001710.1 Lsi02g00171 654913

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00171 1219 MobiDBLite consensus disorder prediction 824 855 - -
Lsi02g00171 1219 Gene3D - 202 398 IPR043153 -
Lsi02g00171 1219 ProSiteProfiles Tripartite DENN domain profile. 19 452 IPR037516 -
Lsi02g00171 1219 Pfam uDENN domain 35 103 IPR005113 -
Lsi02g00171 1219 Gene3D - 1005 1218 IPR015943 GO:0005515
Lsi02g00171 1219 SMART DENN_cls 122 317 IPR001194 -
Lsi02g00171 1219 ProSiteProfiles Trp-Asp (WD) repeats profile. 1043 1082 IPR001680 GO:0005515
Lsi02g00171 1219 Pfam dDENN domain 408 458 IPR005112 -
Lsi02g00171 1219 Pfam WD domain, G-beta repeat 1038 1073 IPR001680 GO:0005515
Lsi02g00171 1219 Pfam WD domain, G-beta repeat 955 991 IPR001680 GO:0005515
Lsi02g00171 1219 Pfam WD domain, G-beta repeat 859 908 IPR001680 GO:0005515
Lsi02g00171 1219 Pfam WD domain, G-beta repeat 918 950 IPR001680 GO:0005515
Lsi02g00171 1219 ProSiteProfiles Trp-Asp (WD) repeats profile. 960 1000 IPR001680 GO:0005515
Lsi02g00171 1219 MobiDBLite consensus disorder prediction 834 855 - -
Lsi02g00171 1219 CDD WD40 860 1156 - -
Lsi02g00171 1219 SMART WD40_4 1076 1115 IPR001680 GO:0005515
Lsi02g00171 1219 SMART WD40_4 857 908 IPR001680 GO:0005515
Lsi02g00171 1219 SMART WD40_4 953 991 IPR001680 GO:0005515
Lsi02g00171 1219 SMART WD40_4 913 950 IPR001680 GO:0005515
Lsi02g00171 1219 SMART WD40_4 1036 1073 IPR001680 GO:0005515
Lsi02g00171 1219 SMART WD40_4 994 1033 IPR001680 GO:0005515
Lsi02g00171 1219 SMART WD40_4 1175 1214 IPR001680 GO:0005515
Lsi02g00171 1219 SMART WD40_4 1120 1157 IPR001680 GO:0005515
Lsi02g00171 1219 MobiDBLite consensus disorder prediction 784 809 - -
Lsi02g00171 1219 SMART dDENN_cls 377 445 IPR005112 -
Lsi02g00171 1219 ProSiteProfiles Trp-Asp (WD) repeats profile. 920 959 IPR001680 GO:0005515
Lsi02g00171 1219 PANTHER DENN DOMAIN-CONTAINING PROTEIN 3 3 1219 - -
Lsi02g00171 1219 SUPERFAMILY WD40 repeat-like 861 1214 IPR036322 GO:0005515
Lsi02g00171 1219 MobiDBLite consensus disorder prediction 794 809 - -
Lsi02g00171 1219 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 920 950 - -
Lsi02g00171 1219 PANTHER C-MYC PROMOTER BINDING PROTEIN 3 1219 - -
Lsi02g00171 1219 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 960 994 - -
Lsi02g00171 1219 SMART uDENN_cls 1 104 IPR005113 -
Lsi02g00171 1219 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1083 1115 - -
Lsi02g00171 1219 Pfam DENN (AEX-3) domain 123 315 IPR001194 -
Lsi02g00171 1219 ProSiteProfiles Trp-Asp (WD) repeats profile. 1083 1115 IPR001680 GO:0005515
Lsi02g00171 1219 ProSiteProfiles Trp-Asp (WD) repeats profile. 1005 1042 IPR001680 GO:0005515
Lsi02g00171 1219 ProSitePatterns Trp-Asp (WD) repeats signature. 1020 1034 IPR019775 -
Lsi02g00171 1219 Gene3D - 1 172 - -
Lsi02g00171 1219 PRINTS G protein beta WD-40 repeat signature 937 951 IPR020472 -
Lsi02g00171 1219 PRINTS G protein beta WD-40 repeat signature 978 992 IPR020472 -
Lsi02g00171 1219 PRINTS G protein beta WD-40 repeat signature 1060 1074 IPR020472 -
Lsi02g00171 1219 Gene3D - 847 1004 IPR015943 GO:0005515
Lsi02g00171 1219 ProSiteProfiles Trp-Asp (WD) repeats profile. 890 908 IPR001680 GO:0005515
Lsi02g00171 1219 ProSitePatterns Trp-Asp (WD) repeats signature. 978 992 IPR019775 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00171 - - - csv:101212131 2295.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00171 Lsi-Chr2:1437763 Lsi11g01064 Lsi-Chr11:18563049 5.54E-11 dispersed
Lsi02g00171 Lsi-Chr2:1437763 Lsi02g02285 Lsi-Chr2:29422484 5.67E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g344 . . . . . Bpe13g00342 Bma06g00001 . Cmo13g01072 . . . . . . Cpe20g00113 . . . . . . . . . . . . . . . Cone2ag0645 . . . Lsi02g00171 Csa01g00654 Chy12g01446 Cme12g01886 . . . . . . . . Sed08g2171 . . Cma13g01032 . Car13g00866 . . . Bhi08g01221 Tan05g2280 Cmetu12g2040 Lac10g0223 Hepe07g2408 . . Cla04g01103 Cam04g1156 Cec01g1666 Cco01g1712 Clacu04g1183 Cmu04g1163 Cre01g1461 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012064 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00171 Lsi_Chr02 FPKM 5.641293 4.534562 11.279537 10.620869 11.161256 11.45489 12.316645 21.164272 22.071117 20.694174