Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00172 ATGGAGTCCGATAAGATTAAAGGGGTTGTTGTAATCACTCTTCCGCCGCCGGATAACCCGTCGTTGGGTAAATCCATAACTGCTTTTACACTCACCGATGACTTCCCGGAACCTCCTCGCGAATCCGTTGCCGTTGGTCAAGAAATACAACAACCCAACAGCAATCATTTGACTCTTCCACCGACTCTCCCGATTCAAGTCCCTTCGAATCAGCGAAGTATCCCTTTGTCCAGGGATCTTTTTGCTGGTACTCCTAGAAAGCTTGTTGTCTTATTAGGCATTGCCCTTGTTGCTATTTATCTTTATTCTTCCAATTTTCCGGAGACCCTTCAGGAGCTGCGTAGTTCCGAGAAGAATGATGAGGATCGCCGTACATCCTTGCTGTTTCCCCTTTATTTCGAATCGGAGTTGGGTGATACCAGTGATTTCCAGCTTAAGTTGGGAAAAACTGTGGGTATAAATAAGGATGATCTGGGTGCAAAATTCAATGATGTACTTGGAGTTCCGAAGCCCAGCAAATTGATTTCTGCCACTTCAAAATCTGATTCCTCAGCCGTTTTTCCTGTGCGGGGAGATATCTATCCAGATGGATTGTATTATACTTACATAATGGCTGGAGAGCCACCAAGACCTTACTTCCTTGACATTGATACTGGGAGTGACTTGACATGGATTCAGTGTGACGCTCCTTGCACCAGTTGTGGCAAGTGCCATAATCCTCGTGTCAGTGGTAACAAGTGTTTTTTAAGCGAGGGAAGAAGTCCATTATACAAGCCAAAAAGAGAGAACATTGTATCTTTCAAGGACTCTTTGTGCATGGAAGTTCAGAGAAATTATGGTGGCAATCAGTGTGCCACCTGCCATCAGTGCGACTACGAGGTTCAATATGCCGATCAGAGCTCCTCTCTAGGGGTTCTTGTTAAAGACAAGTTTACTTTAAGGTTTTCCAATGGATCATTGACTAAATTAAATGCAATTTTCGGGTGTGCTTATGATCAGCAAGGCTTACTATTGAACACTTTGTCGAAGACTGATGGCATTCTAGGGCTAAGCAGGGCTAAAGTTAGCTTACCTTCTCAGTTGGCCAGTCAAGGGATCATAAACAATGTGGTAGGTCACTGTCTTACCGGTGATCCAGCAGGTGGTGGATATTTGTTTTTAGGTGATGATTTTGTGCCACAGTGGGGGATGGCATGGGTTGCCATGCTTGACAGCCCTTCCATAGATTTTTATCAAACAAAGGTTGTGAGAATAGATTATGGAAGCAGCTCACTGAGTCTTGATACTTGGGGAAGCAACAGGGAACGAGTAGTTTTCGATAGTGGCAGCTCATACACATACTTCACAAAAGAAGCATATTCCCAATTGGTTGCAAATCTTGAAGAACTCTCTGCGTTTGGGCTTATTATTCAAGATTCGTCAGATACCATTTGTTGGAAAACTGAATCTTCTATCGGCTTTACTCATGAGTCATGA 1476 43.7 MESDKIKGVVVITLPPPDNPSLGKSITAFTLTDDFPEPPRESVAVGQEIQQPNSNHLTLPPTLPIQVPSNQRSIPLSRDLFAGTPRKLVVLLGIALVAIYLYSSNFPETLQELRSSEKNDEDRRTSLLFPLYFESELGDTSDFQLKLGKTVGINKDDLGAKFNDVLGVPKPSKLISATSKSDSSAVFPVRGDIYPDGLYYTYIMAGEPPRPYFLDIDTGSDLTWIQCDAPCTSCGKCHNPRVSGNKCFLSEGRSPLYKPKRENIVSFKDSLCMEVQRNYGGNQCATCHQCDYEVQYADQSSSLGVLVKDKFTLRFSNGSLTKLNAIFGCAYDQQGLLLNTLSKTDGILGLSRAKVSLPSQLASQGIINNVVGHCLTGDPAGGGYLFLGDDFVPQWGMAWVAMLDSPSIDFYQTKVVRIDYGSSSLSLDTWGSNRERVVFDSGSSYTYFTKEAYSQLVANLEELSAFGLIIQDSSDTICWKTESSIGFTHES 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1453899 1457993 + Lsi02G001720.1 Lsi02g00172 654914

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00172 491 Pfam Xylanase inhibitor N-terminal 199 389 IPR032861 -
Lsi02g00172 491 Gene3D Acid Proteases 394 488 IPR021109 -
Lsi02g00172 491 Gene3D Acid Proteases 174 389 IPR021109 -
Lsi02g00172 491 PANTHER ASPARTYL PROTEASES 13 482 IPR001461 GO:0004190|GO:0006508
Lsi02g00172 491 ProSiteProfiles Peptidase family A1 domain profile. 199 491 IPR033121 -
Lsi02g00172 491 PANTHER ASPARTYL PROTEASE APCB1 13 482 - -
Lsi02g00172 491 SUPERFAMILY Acid proteases 193 466 IPR021109 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00172 - - - cmo:103497165 855.899
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00172 Lsi-Chr2:1453899 Lsi10g00785 Lsi-Chr10:10689408 2.59E-63 dispersed
Lsi02g00172 Lsi-Chr2:1453899 Lsi08g00444 Lsi-Chr8:12076789 6.55E-62 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g339 . . . . . Bpe13g00343 Bma06g00033 . Cmo13g01071 . . . . . . Cpe20g00114 . . . . . . . . . . . . . . . Cone2ag0698 . . . Lsi02g00172 Csa01g00655 Chy12g01445 Cme12g01885 . . . . . . . . Sed01g1713 . . Cma13g01031 . Car13g00865 . . . Bhi08g01222 Tan05g2279 Cmetu12g0397 Lac10g0224 Hepe07g2405 . . Cla04g01102 Cam04g1155 Cec01g1665 Cco01g1711 Clacu04g1182 Cmu04g1162 Cre01g1460 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012585 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00172 Lsi_Chr02 FPKM 9.314503 13.254145 5.235913 3.828473 6.176003 6.436561 6.38672 10.718204 10.414463 13.067587