Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00180 ATGGACGGAAAGCAAGTTTCCGGCGCCGGTCTGCCGGAGAGCATCGCAGGAATGTCGAAGAACCAACTATATGATATCATGTCTCAAATGAAGACACTGATCGAACAGAATCAGCAGCAGGCGAAACAAATCCTCATCCAAAATCCGCTATTGACCAAAGCTCTTTTCCAGGCGCAGATCATGCTTGGGATGGTACGCCCGCCTCAGATTCCAAGCATTCAGCCTTCAGCCTCACAGCATTCTCAACCATCAACACAGACAACTCCACAATCAAATATTCAGCCTACTCAAACTCCAGCTGCTCAAATAAGTTTGCAAGAACAGACAAGTGCACCACCTTTGGCCCCTCCTAGAAAACAATATCAGAACCAACCATCAATGCCTATCTCATCAACTACTCTTCCTCCTGTGAACATTCAGCCTCGGTCAACACCTCTGATTCCCCTACAGACACCGCAGCATCCCAAGGGATTTGATATCCCCCAAGCAAATCCTATTTCTGTCCCACAACCCTCTCAAATTCCAAGTGTATCTCCAATTCTTCCATCTGCTGCTCAGCCACCTTTACTTCATCAACCTCAGATTTCAACTGCCTCCAAACAGCTGCAGCAGCCATTACAAACAGCTGAAATTCACCACCTGCCGCCACAGGCACCATTGCCCCCACATTCCAGAGCACCTACGGGCCCAAATTTCCACCAGCACTACCCCCCTCAAATGGGCCACAATATGAATTACCAACCTCCTGGCATCCCACAGCATGTTTCACAACCCATGTTTCATTCAGGTACCAAACTCCCTCCTGGCCTAGGAAATTCATTTCCCCAGGGACAGTCGGGACTACCTAGTCAGCCACCCCCTCAATCAATGTATCAGGCTGGAGGTTCTAAATTAGGTACAGAATTCATGAACCAAGTTGGAACTTCAAAGCCTGCGGACAGAGGGCCTTGGATGCCTGGCCCTCCAGAAAATCCTACACTTCCACAGCAACTATCCGGACCACCACCAATACCATCGGTTCCTAGTCAGATGGGCCCTAACAATCAACCTCGTCCTGCGCCACCGTTGAGTCAGGAGATGGAGAAGATGTTACTTCAACAAGTCATGAGTCTCACACCAGAACAAATTAATCTCCTGCCTCCAGAGCAAAGAAATCAGGTGCTTCAACTACAGAAGATACTGCGCCAATGA 1191 48.87 MDGKQVSGAGLPESIAGMSKNQLYDIMSQMKTLIEQNQQQAKQILIQNPLLTKALFQAQIMLGMVRPPQIPSIQPSASQHSQPSTQTTPQSNIQPTQTPAAQISLQEQTSAPPLAPPRKQYQNQPSMPISSTTLPPVNIQPRSTPLIPLQTPQHPKGFDIPQANPISVPQPSQIPSVSPILPSAAQPPLLHQPQISTASKQLQQPLQTAEIHHLPPQAPLPPHSRAPTGPNFHQHYPPQMGHNMNYQPPGIPQHVSQPMFHSGTKLPPGLGNSFPQGQSGLPSQPPPQSMYQAGGSKLGTEFMNQVGTSKPADRGPWMPGPPENPTLPQQLSGPPPIPSVPSQMGPNNQPRPAPPLSQEMEKMLLQQVMSLTPEQINLLPPEQRNQVLQLQKILRQ 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1534632 1538492 + Lsi02G001800.1 Lsi02g00180 654922

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00180 396 MobiDBLite consensus disorder prediction 315 353 - -
Lsi02g00180 396 MobiDBLite consensus disorder prediction 247 359 - -
Lsi02g00180 396 Pfam Transcription termination and cleavage factor C-terminal 364 395 IPR026896 GO:0031124
Lsi02g00180 396 MobiDBLite consensus disorder prediction 269 307 - -
Lsi02g00180 396 Pfam Hinge domain of cleavage stimulation factor subunit 2 15 73 IPR025742 -
Lsi02g00180 396 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 1 396 - -
Lsi02g00180 396 Gene3D - 6 73 - -
Lsi02g00180 396 MobiDBLite consensus disorder prediction 71 150 - -
Lsi02g00180 396 Gene3D - 356 396 IPR038192 -
Lsi02g00180 396 MobiDBLite consensus disorder prediction 69 187 - -
Lsi02g00180 396 MobiDBLite consensus disorder prediction 165 180 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00180 - - - csv:101206596 672.93
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00180 Lsi-Chr2:1534632 Lsi08g00602 Lsi-Chr8:14296859 2.85E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g320 . . . Bda15g00516 Bpe12g00691 . . . Cmo13g01066 Cmo18g00034 . . . . . Cpe20g00120 . . . . . . . . . . . . . . . . . . . Lsi02g00180 Csa01g00663 Chy12g01440 Cme12g01878 . . . . . . . Bma08g00062 Sed08g2180 . . Cma13g01025 Cma18g00041 Car13g00860 Car18g00035 Cpe09g01139 . Bhi08g01231 Tan05g2270 Cmetu12g1774 Lac10g0235 Hepe07g2394 . . Cla04g01094 Cam04g1145 Cec01g1655 Cco01g1704 Clacu04g1173 Cmu04g1154 Cre01g1449 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005289 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00180 Lsi_Chr02 FPKM 5.77958 7.228172 12.042273 10.466544 10.566175 11.149762 10.457033 15.873688 18.737495 17.036251