Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00181 ATGACCAGAGACGGCGGCCCAAGAGGCCGAAAGAGGGGTTTCTTCAACGGCGAAGGAGCTATGGAATTTTTCCACCATTTAATGGCGGAGAAGCCTCTTCTTCCATTTCTGATACCTTTGGTTCTGATTGCTTGGTCTATTGAGAGATGGGTTTTCTCTCTCTCTAATTGGGTTCCTTTGGCTGTTGCTGTGTGGGCCACTTTACAGTATGGGAGTTATCAACGCCAATTAATTGTTGATGATTTGAACACAAAATGGAGGCGACTCATAACAAACACTTCGCCTGAAACACCTTTAGAACCCTGTGCATGGTTGAATAAACTGTTGATGGAAGTATGGCCAAATTACTTTAATCCAAAACTTTCCACAAAGTTTTCATCCACAGTAAATAAACGGTTGAAGGACCGAAAGTCAAGGCTTATTGAAAAAATTGAACTGCTGGACTTTTCTCTAGGCTCATGCCCTCCTAGCTTGGGTCTTAGTGGGACTCGATGGTCGACTTGTGGTGATGAGAGAATCATGCATTTGAGTTTCGATTGGGACACAAATGAAATGAGCATTTTGTTGCAAGCGAAACTGGCCAAGCCACTCATGGGAACTGCACGGATTGTCATAAACAGCCTCCATATAAAGGGCGATCTTGTCTTGATGCCTATTTTGGATGGGAGGGCAGTTTTATTTTCATTTATTACGACTCCTGATGTAAGAATAGGAGTTGCTTTTGGAAGTGGTGGAAGCCAATCATTACCTGCAACAGAGCTCCCTGGTGTTTCCTCCTGGCTGGTCAAAATTTTTACAGATACCCTGGTTAGAACAATGGTTGAACCTCGCAGGCGTTGTTTCTCTTTGCCACCCGTTGATCTGAGGAAAAAAGCTGTTGGTGGTATTGTATATGTGACTGTCATTTCTGCCAGAAAACTTTATAGAAGTAGTTTGAAAGGAAGCCCAACCAGAAGGCTACAAAGCTACTCTTCTAATGGTTCATTCGGAGAGCATCTTACTGATAAAGATTTGCAGACATTTGTTGAGGTTGAACTTGAAAAGCTTAGTAGAAAAACAGATGCAAGATCAGGGTCAGACCCTCAGTGGAACACAACATTCAATATGATTTTACATGAAGATACAGGAACTCTACGGTTTCATCTTTACGAGTATAATCCAAGCCACGTGAAGCATGATTACCTTGCAAGTTGTGAGGTTAAGATGAAATATGCTGCAGATGATTCCACCACATTTTGGGCAATAGGACCAGATTCCAGAGTGATAGCCAAGCATGCTGACTTCTGTGGAAAAGAAGTTGAAATGGATATTCCATTTGAAGGGGCCCATTGTGGAGAGTATAACTCTTCGAATGGCAACAACCTCCCATCGATGGTAATTTCACACCATCTCATACAAGAGAGAAATGAAATGAAAGACACCCGGCTGCGGGTGAGGCTTGTTTTAAAGGAATGGATGTTCTCGGATGGTTCACATAGTTCTAACAGGTATCATGTTAGTCCACAACAATCTCTCTATGGGGCGTCGAGTCTTCTTTCTAGCACTGGAAGAAAAATTAACATCACAGTTGTGGAAGGAAAGGATTTACCCACGAAAGACAAAAATGGAAAGTGTGATCCATATGTCAAATTGCAGTATGGAAAGGTAGTTTTCTTTCCTTCTAATTTCTCAAATATTTCACTAGCTCTCCAGCGCACAAGAACTGCTCACTCCTTCAATCCAACATGGAATCAGAAGTTTGAATTCGATGAGATAGCTGGTGGTGAATATCTCAAGTTAAAATGCCTTACTGAAGACATCTTCAGCAGCGATAACACTGGCAGTGCAAGGGTAAATCTAGAAGGATTAGTAGAAGGGTCAGTTAGAGATGTGTGGATTCCTCTAGAAAAGGTGAATTCTGGAGAATTAAGGCTTCAAATTGAAACCATCAGAGTGGATGACAATGAAGGATCAAAGGGCTCAAGCTTGGCTCCGACAAATGGTTGGATTGAACTTGTTCTACTTGAAGCAAGAGATCTTGTTGCTGCTGATCTCAGAGGGACAAGTGATCCTTATGTGAGGGTCCAATATGGAAAATTGAAGAAAAGAACCAAGGTTATGTACAAAACTCTAAGTCCCCAATGGAATCAGATTTTGGAGTTTCCTGACAATGGAAGCCCTCTGCTATTACATGTTAAAGACCACAATGCTCTACTTCCCACATCAAGTATAGGAGATTGTGTTGTGGAATATCAAGGGCTGCCTCCAAACCAAATGTTTGATAAATGGATACCACTTCAGGGGGTCAAAAGGGGAGAGATACATATCCAAATCACCAAGAGAATTCCAGAACTAGATAAGAGATCTAGTTTAGATTCAAGAACTAGTCTCGATTCCGAATTTCCCATGAACAAAGCACATCAGATTTCCAGTCAGATGAAACAAATGATGAATAAGTTACAAACTTTCATTGAAGATAGCAATGTTGAAGGACTTGCAACAGCAATGAGTGAACTGGAAAGTCTAGAGGATCTGCAAGAAGAGTACATGGTACAGCTTGAAACTGAACAAATGCTTCTAATTAACAAGATTAAGGAACTTGGTCAGGAGTTTCTCAACTCATCCCCTTCCTTAAGCAGAAGATCATCTGGATATTAA 2637 41.33 MTRDGGPRGRKRGFFNGEGAMEFFHHLMAEKPLLPFLIPLVLIAWSIERWVFSLSNWVPLAVAVWATLQYGSYQRQLIVDDLNTKWRRLITNTSPETPLEPCAWLNKLLMEVWPNYFNPKLSTKFSSTVNKRLKDRKSRLIEKIELLDFSLGSCPPSLGLSGTRWSTCGDERIMHLSFDWDTNEMSILLQAKLAKPLMGTARIVINSLHIKGDLVLMPILDGRAVLFSFITTPDVRIGVAFGSGGSQSLPATELPGVSSWLVKIFTDTLVRTMVEPRRRCFSLPPVDLRKKAVGGIVYVTVISARKLYRSSLKGSPTRRLQSYSSNGSFGEHLTDKDLQTFVEVELEKLSRKTDARSGSDPQWNTTFNMILHEDTGTLRFHLYEYNPSHVKHDYLASCEVKMKYAADDSTTFWAIGPDSRVIAKHADFCGKEVEMDIPFEGAHCGEYNSSNGNNLPSMVISHHLIQERNEMKDTRLRVRLVLKEWMFSDGSHSSNRYHVSPQQSLYGASSLLSSTGRKINITVVEGKDLPTKDKNGKCDPYVKLQYGKVVFFPSNFSNISLALQRTRTAHSFNPTWNQKFEFDEIAGGEYLKLKCLTEDIFSSDNTGSARVNLEGLVEGSVRDVWIPLEKVNSGELRLQIETIRVDDNEGSKGSSLAPTNGWIELVLLEARDLVAADLRGTSDPYVRVQYGKLKKRTKVMYKTLSPQWNQILEFPDNGSPLLLHVKDHNALLPTSSIGDCVVEYQGLPPNQMFDKWIPLQGVKRGEIHIQITKRIPELDKRSSLDSRTSLDSEFPMNKAHQISSQMKQMMNKLQTFIEDSNVEGLATAMSELESLEDLQEEYMVQLETEQMLLINKIKELGQEFLNSSPSLSRRSSGY 878
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1537898 1546982 - Lsi02G001810.1 Lsi02g00181 654923

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00181 878 CDD C2 519 628 - -
Lsi02g00181 878 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 95 284 IPR031468 GO:0008289
Lsi02g00181 878 PANTHER OS01G0128800 PROTEIN 10 876 - -
Lsi02g00181 878 Gene3D C2 domain 294 426 IPR035892 -
Lsi02g00181 878 ProSiteProfiles C2 domain profile. 500 626 IPR000008 -
Lsi02g00181 878 ProSiteProfiles C2 domain profile. 275 414 IPR000008 -
Lsi02g00181 878 Coils Coil 825 863 - -
Lsi02g00181 878 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 289 405 IPR035892 -
Lsi02g00181 878 SMART C2_3c 296 414 IPR000008 -
Lsi02g00181 878 SMART C2_3c 518 625 IPR000008 -
Lsi02g00181 878 SMART C2_3c 667 756 IPR000008 -
Lsi02g00181 878 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 656 772 IPR035892 -
Lsi02g00181 878 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 517 643 IPR035892 -
Lsi02g00181 878 Pfam C2 domain 518 628 IPR000008 -
Lsi02g00181 878 Pfam C2 domain 296 404 IPR000008 -
Lsi02g00181 878 Pfam C2 domain 663 759 IPR000008 -
Lsi02g00181 878 Gene3D C2 domain 645 774 IPR035892 -
Lsi02g00181 878 Gene3D C2 domain 508 644 IPR035892 -
Lsi02g00181 878 ProSiteProfiles C2 domain profile. 644 757 IPR000008 -
Lsi02g00181 878 CDD C2 663 759 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00181 - - - csv:101213500 1563.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00181 Lsi-Chr2:1537898 Lsi04g02114 Lsi-Chr4:28272578 1.65E-09 dispersed
Lsi02g00181 Lsi-Chr2:1537898 Lsi06g01329 Lsi-Chr6:23873869 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g316 Blo04g00823 . Bda06g00806 . . . . . Cmo13g01065 Cmo18g00035 . Cma11g00273 Car10g00217 Car11g00249 . Cpe20g00121 . . . . . . . . . . . . . . . . . Cone13ag0280 . Lsi02g00181 Csa01g00664 Chy12g01439 Cme12g01877 . Blo15g00070 . Bda14g00929 . Bpe15g00523 Bma03g00894 . Sed08g2181 Cmo10g00245 Cmo11g00278 Cma13g01024 Cma18g00042 Car13g00859 Car18g00036 Cpe09g01138 . Bhi08g01232 Tan05g2269 Cmetu12g1130 Lac10g0236 Hepe07g2393 . . Cla04g01093 Cam04g1144 Cec01g1654 Cco01g1703 Clacu04g1172 Cmu04g1153 Cre01g1448 . Csa01g00387 . Cme02g01738
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002821 1 3 2 1 1 1 4 1 2 1 1 2 3 2 2 3 2 1 2 1 2 2 2 2 2 1 2 3 2 2 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00181 Lsi_Chr02 FPKM 5.41873 4.734569 0.280927 0.313781 16.740864 16.331215 17.996698 0.0 0.0 0.0