Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00182 ATGGCTGAGTTCACTCCAAACTTTCAAAGCTTAAAGCCATCATCTTTTCCTCTAATGGATATGGATTCCAACCAAAATCCAACACTACTTCATAACCCAAATGTTAATTTTCTTGACAACAACATTCCTGTTTTGTTCAATGACAGTTTCTTTAGCAATCAAACTTCGCCTCCTTCTCCTCCTAGATTCCTGGAAAATTGGGGAGAAAATTTCCAAGGAATTTTCTCTCAAGCCAATCAGATCACTCCTACTACTACTTCACCTGTTTTTGAGCCTACAAATCCATTTGGAAATGACCTCCATGGAAGCAACAAAAGAAAGCTTGAAAATGATGCATATGAAAGCAGCTCTGGCAACTCAACCCCTCAAGTTTCTGAAAATGGGATCAAGACAAAAAATAACACTGGAAAAGGAAAACGGTCGAAAAAAGGTGACGCTAACGACGGCGAGAAACAGAGGGAAGTGGTTCATACAATGGGAATGGCAGTGATGTTGGATGAAATAATCAATTATGTGCAGTCTTTACAGAATCAAGTTGAGTTTCTGTCTATGAAACTCACAGCTGCGAGCTCCTTTCATGACTTCAACTCAGACTCAGATGCTGAGGACAAATTGAAGGCAAATGAAATGAGAGAAGGAAATGGAGGATTATTGGTTGCATCAACTCAACTTGGTCCTTTTGACTTAAGCTTTGGTTCTTATTCAACATTGCCATTCAACACCATATGA 729 39.23 MAEFTPNFQSLKPSSFPLMDMDSNQNPTLLHNPNVNFLDNNIPVLFNDSFFSNQTSPPSPPRFLENWGENFQGIFSQANQITPTTTSPVFEPTNPFGNDLHGSNKRKLENDAYESSSGNSTPQVSENGIKTKNNTGKGKRSKKGDANDGEKQREVVHTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSFHDFNSDSDAEDKLKANEMREGNGGLLVASTQLGPFDLSFGSYSTLPFNTI 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1559712 1562055 - Lsi02G001820.1 Lsi02g00182 654924

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00182 242 MobiDBLite consensus disorder prediction 83 152 - -
Lsi02g00182 242 MobiDBLite consensus disorder prediction 138 152 - -
Lsi02g00182 242 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 157 IPR024097 GO:0006355
Lsi02g00182 242 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 158 212 IPR024097 GO:0006355
Lsi02g00182 242 MobiDBLite consensus disorder prediction 83 100 - -
Lsi02g00182 242 PANTHER TRANSCRIPTION FACTOR BEE 1 158 212 - -
Lsi02g00182 242 PANTHER TRANSCRIPTION FACTOR BEE 1 2 157 - -
Lsi02g00182 242 MobiDBLite consensus disorder prediction 113 134 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00182 - - - csv:101213736 363.999
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi02g00182 Lsi06g01326 CCT
Lsi02g00182 Lsi06g01326 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00182 Lsi-Chr2:1559712 Lsi06g01503 Lsi-Chr6:25472081 2.84E-11 dispersed
Lsi02g00182 Lsi-Chr2:1559712 Lsi06g01326 Lsi-Chr6:23847576 6.26E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g314 Blo04g00825 . Bda06g00808 Bda15g00661 Bpe12g00693 . . . Cmo13g01064 Cmo18g00036 Cma10g00230 Cma11g00279 Car10g00215 Car11g00253 . Cpe20g00122 Cpe04g01400 . . . . . . . Cla06g01463 Cam06g1615 Cec06g1678 Cco06g1671 Clacu06g1579 Cmu06g1531 Cre06g2342 . . Cone13ag0303 . Lsi02g00182 Csa01g00665 Chy12g01438 Cme12g01876 Blo13g00169 Blo15g00068 . . Bpe07g01037 Bpe15g00525 . Bma08g00060 Sed08g2182 Cmo10g00243 Cmo11g00282 Cma13g01023 Cma18g00043 Car13g00858 Car18g00037 Cpe09g01137 Cpe18g00762 Bhi08g01233 Tan05g2268 Cmetu12g1509 Lac10g0238 Hepe07g2392 . . Cla04g01092 Cam04g1143 Cec01g1653 Cco01g1702 Clacu04g1171 Cmu04g1152 Cre01g1447 Lsi06g01326 Csa01g00391 Chy02g02357 Cme02g01735
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001476 1 3 3 1 3 2 4 2 2 2 3 2 4 2 2 4 2 1 4 2 2 2 2 2 2 2 2 3 3 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00182 Lsi_Chr02 FPKM 2.175059 3.40627 0.0 0.23394 3.506754 3.038423 3.790456 0.480247 0.385282 0.499482