Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00185 ATGAACAATGTCATGACTTCTTGCAAATTACGGCCGGCGTTTGCTTCTCATTGGCTCTCTGGTTCTGGCGTCAACTTGACCGATCGGTTCTTCCATCCCCGTCAGAACGAGCTCATCGGCGCAATCGCCGAAAAAAGACTTAAAGCAGCTAATTCTGCGAGTGCCGATGAAGCGGATGATGAAGATGTATCCACTGACATCTTCTTCGAACTAAGTACTTTGCAAATTGCAACTAATTTCTTTTCCGAGGCGAATAAGCTCGGCAATGGAGGGTTTGGGCCCGTCTACAAGGGGTTGATGCCAAATGGCCAACAAGTAGCAGTCAAGAAGCTGTCGTTAGATTCAAGACAAGGAGTGAGGCAATTTAGTAATGAAGTGAAACTTCTACTGAGAATTCAGCACCGAAATTTGGTCATTTTATTGGGCTGTTGTGTAGAAGGACCTGAAAAGATGCTTGTATATGAGTACCTGCCAAACAGAAGTCTTGATTACTTTATTTTTGGTATCGTGAGAGGTCTTCTCTACTTACATGAAGAGGCTCCTGCAAGAATTATACATAGAGATGTCAAAGCTAGTAACATATTATTAGATGAGCAATTGAATCCGAAAATCTCAGATTTTGGATTAGCACGACTTTTTCCTGGGGATGACACGCATTTGAATACATTTAAGATCGCTGGCACTCATGGCTATATGGCTCCAGAATATGCAATTCATGGATATTTGTCTGTGAAGAGTGATGTTTTCAGTTTTGGCATCTTGGTATTAGAGATTGTTAGTGGAAGAAAAAATTATGACGATCGACTTGGTGCACAACAAGTCGACCTCTTGGGATATGCATGGTCGCTTTACCAAGAAGGAAGGATTTTAGAATTAGCTGATCAAAGCTTAACAAAATGCAATGTAGATGAGGCAGCTATGTGCATTCAGTTGGGTTTGTTATGTTGTCAAGCAAGTGTTACAGATAGGCCTGACATGAATACCATTCATCTCATGCTTTCTAGTGATTCATTCACGTTGCCGCGACCTGGAAAACCTGGAATTCACGGTCGAGCAGCACGTCGGACAACTACCTCTACTTCGAATTTCACCAAGACAAATACTAGTACACAAACTGGCGTTACCAGAGCTTCTACTAGTAGTTTGGCAGAGGATTATTCAAGAAATTCCATTTCTGTTTCTTCTATTGATGAAGGCAGGTGA 1203 41.9 MNNVMTSCKLRPAFASHWLSGSGVNLTDRFFHPRQNELIGAIAEKRLKAANSASADEADDEDVSTDIFFELSTLQIATNFFSEANKLGNGGFGPVYKGLMPNGQQVAVKKLSLDSRQGVRQFSNEVKLLLRIQHRNLVILLGCCVEGPEKMLVYEYLPNRSLDYFIFGIVRGLLYLHEEAPARIIHRDVKASNILLDEQLNPKISDFGLARLFPGDDTHLNTFKIAGTHGYMAPEYAIHGYLSVKSDVFSFGILVLEIVSGRKNYDDRLGAQQVDLLGYAWSLYQEGRILELADQSLTKCNVDEAAMCIQLGLLCCQASVTDRPDMNTIHLMLSSDSFTLPRPGKPGIHGRAARRTTTSTSNFTKTNTSTQTGVTRASTSSLAEDYSRNSISVSSIDEGR 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1581109 1589488 - Lsi02G001850.1 Lsi02g00185 654927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00185 400 Gene3D Phosphorylase Kinase; domain 1 39 155 - -
Lsi02g00185 400 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 46 398 - -
Lsi02g00185 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Lsi02g00185 400 SMART serkin_6 81 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00185 400 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 46 398 - -
Lsi02g00185 400 MobiDBLite consensus disorder prediction 353 381 - -
Lsi02g00185 400 ProSiteProfiles Protein kinase domain profile. 81 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00185 400 MobiDBLite consensus disorder prediction 343 381 - -
Lsi02g00185 400 SUPERFAMILY Protein kinase-like (PK-like) 66 333 IPR011009 -
Lsi02g00185 400 Pfam Protein kinase domain 82 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00185 400 Gene3D Transferase(Phosphotransferase) domain 1 156 339 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00185 Lsi-Chr2:1581109 Lsi02g00644 Lsi-Chr2:5766332 3.31E-105 dispersed
Lsi02g00185 Lsi-Chr2:1581109 Lsi11g01496 Lsi-Chr11:23434550 2.75E-110 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83330 PF00069 Pkinase 7.40E-39 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00185 - - csv:101214463 609.372