Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00189 ATGGCGGGTTCATCTCTCATGGACACTCTCTTCCAGCGAACTCTCGATGACCTTATCAAAGGCCTCCGCCTTCAACTTATTGGCGAGTCCGCTTTTATCTCAAAGGCCATGGATGAGATTCGCCGCGAGATCAAATCTACGGACCCTCAAACTAAGTCCACCGCTCTGCAAAAGCTCTCCTATCTCAGCTCCCTTCACGGTATCGATATGAACTGGGCTGCTTTCCATGTCGTTGAGGTTATGTCATCCTCTCGCTTCGCTCAAAAGAAGATCGGGTACCTCGCTGCGTCCCAATCGTTTCACGAAGCCACCCCAGTTCTTCTCCTCATTACCAACCAGCTTCGGAAGGATTTAACTAGCACCAACGAATTCGAGGTTAGTCTTGCTCTTGATTGTTTGTCCAGAATTGCAACTATCGATCTTGCTAGGGACTTGACACCTGAGATTTTTACATTGTTGTCGAGTAGTAAGGTCTTTGTTAAAAAGAAGGCAATTGGTGTGGTTTTGAGGGTTTTTGGGAAATACCCAGATGCAGTTAGAGTGTGTTTTAAGCGTTTGGTTGAGAATTTAGAGAGTTCGGATCCCCGGATTTTGTCTGCAGTTGTTGGGGTCTTTTGCGAGCTTGCTTCCCAGGACCCTAGATCTTATCTTCCATTGGCCCCTGAATTTTATAGGATTTTGGCTGATAGCAAGAACAATTGGGTGCTGATTAAGGTCTTGAAGATATTTAAAAATCTTGCCCCATTGGAGCCTAGATTGGCTAGGAAAATTGTTGAACCTATAACTGAGCATATGAGAAGAACAGGGGCAAAGTCATTGATGTTTGAGTGCATTAGGACTGTGGTGACTAGCTTGTCTGACTTTGAATCAGCAGTAAGACTTGCTGTTGAGAGAACTCAAGAATTTTTGGTTGACGATGATCCGAATCTTAAGTATCTTGGATTGCACGCTCTTTCAATCCTTGTGCCGAAACATTCATGGGCAGTTTTGGAGAATAAAGAGGTTGTAATTAAATCTCTAAGTGATGTGGATCCAAATGTTAAACTTGAGTCTTTGCGGCTTGTGATGGCTATGGTTTCTGATAATAATGTAGCTGAAATTTGCAGAGTTTTGGTGAACCTAGCGCTTAAATCTGATCCTGAGTTTTGCAATGAAATTCTTGGGTCCATATTAGCCACATGTGGTGAAAATGTGTATGAAATCATTATCGACTTTGATTGGTATGTGTCACTTCTTGGAGAAATGTCCAGGATCCCACATTGCCGAAAGGGGGAGGAAATTGAAAATCAGCTTATAGATATTGGTATGAGGGTCAAGGATGCAAGGCCTACTCTTGTCATGGTTGGCCGTGATCTGCTGATTGATCCGGCATTACTTGGTAATCCTTTCATGCACAGGATACTATCAGCTGCTGCTTGGGTGTCAGGAGAATACGTGCAGTTTTCAGGCAAGCCATTCGAACTCCTAGAGGCATTGTTACAGCCTCGCAGTAATCTTTTGCCACCATCGGTTAGAGCAGTTTATGTTCAGTCAGCATTTAAAGTGACGGTTTTTTGTTTAAATTCTTACATTCAAGAGCCAAACATTGACTCCTCTTCATATGTTGATACATTGGTAGAGAATGGTTCAAAATCTATCTCTGCCAGGGAATGCCAAGATGCTTCTGATCTTTGTGAACAGGTTGAAGAGTTCAACCCGAGGGGGTCTAATCAACCAGCAAAAGTTACTTTTGCAGAAAATGATAGGGAGACATTGTCTCGTGTCCAGACATGTACATCTGCATCATTAGAGGATAATAGTTCATCTCTTGGATCGATAGTTGAGTTGTTGAACTTTATTCAGTTTTCTTTGGGCCCTTTAACGTGGAGCAATGATGTTGAATTGCTTGAGAGATCTAGAAACTTGCTCAATTTTATTGAGCTAATTAGGCAACAGATTCCTGATGGCCTAAATGAAAAGGATGGGACTTCAGAAATGGAACTTGCTGAAATTTCTAAAATAGTTGAACTGATTCTTGATGCCTTCTCCGATGACTTCGGCCCAATCTCAATAAATGCTCAAGAAAGGGTTCCGATTCCTGAAGGATTGATACTCAAGGAGAATCTTGATGATTTGGAAATGATATGTAGTGATATTCAGCTACCAGAAGGCTCTTATGCTTTTGGAAATTCTCTCTACGAGGAAAGGGTTGATTCATCTATATTATCTCAACAGAGCCAGCAAGAGTCTGAATCATCAAATGCAACCACATCTCTTCTCTCCGAACACCGTAAGCGGCATGGACTGTATTATCTTCCATCAGATAAGACTGATGATGCCTCTAATGATTATCCCCCAGCCAACGAACTCAAGTTACAAGATAATCTGGATGACGATGCTGCCCACCTTGTCAAGCTTGCAGAACGATCACTTGCATTAAAGAAAAAGTCTAATTCAGCCAAGCCTAGGCCTGTGGTGGTCAGATTGGATGAAGGAGATGAATTGCCTGTTACGAGGAAGAAGCCCCAGTTGAACGATGAACAGCTTTCTGATGCAGTACGTGATGTTCTTGTGGGTAGTGATGCAAGGCCTACTTCCTCACAAACAAACCAATCTTCCAAACCCCCTAGCAGGAGAAAAGGAAAGGAGAAACAGAATGCTGATTATCTTTCTGAATCAAAAGAAAATTTGGGCGATGCCGAAGAGCAATCCTCCAATATGGTAGATACAAGTTCGAGAAGAACACATCGACATCATGGAAAAGATGGTAAACAAGCAAGTCTTGAAAAGAACAGTGAGAAAAAGGATCAAGCTCATAAAAAAGGCAAGCGGCATAGTAGGCAAAAAGCTAAACAAAGTGGGGATGTTTCATTACCTGTCTCTTCACAGACAGTTATACCTGATTTCCTTTTATAG 2895 42.25 MAGSSLMDTLFQRTLDDLIKGLRLQLIGESAFISKAMDEIRREIKSTDPQTKSTALQKLSYLSSLHGIDMNWAAFHVVEVMSSSRFAQKKIGYLAASQSFHEATPVLLLITNQLRKDLTSTNEFEVSLALDCLSRIATIDLARDLTPEIFTLLSSSKVFVKKKAIGVVLRVFGKYPDAVRVCFKRLVENLESSDPRILSAVVGVFCELASQDPRSYLPLAPEFYRILADSKNNWVLIKVLKIFKNLAPLEPRLARKIVEPITEHMRRTGAKSLMFECIRTVVTSLSDFESAVRLAVERTQEFLVDDDPNLKYLGLHALSILVPKHSWAVLENKEVVIKSLSDVDPNVKLESLRLVMAMVSDNNVAEICRVLVNLALKSDPEFCNEILGSILATCGENVYEIIIDFDWYVSLLGEMSRIPHCRKGEEIENQLIDIGMRVKDARPTLVMVGRDLLIDPALLGNPFMHRILSAAAWVSGEYVQFSGKPFELLEALLQPRSNLLPPSVRAVYVQSAFKVTVFCLNSYIQEPNIDSSSYVDTLVENGSKSISARECQDASDLCEQVEEFNPRGSNQPAKVTFAENDRETLSRVQTCTSASLEDNSSSLGSIVELLNFIQFSLGPLTWSNDVELLERSRNLLNFIELIRQQIPDGLNEKDGTSEMELAEISKIVELILDAFSDDFGPISINAQERVPIPEGLILKENLDDLEMICSDIQLPEGSYAFGNSLYEERVDSSILSQQSQQESESSNATTSLLSEHRKRHGLYYLPSDKTDDASNDYPPANELKLQDNLDDDAAHLVKLAERSLALKKKSNSAKPRPVVVRLDEGDELPVTRKKPQLNDEQLSDAVRDVLVGSDARPTSSQTNQSSKPPSRRKGKEKQNADYLSESKENLGDAEEQSSNMVDTSSRRTHRHHGKDGKQASLEKNSEKKDQAHKKGKRHSRQKAKQSGDVSLPVSSQTVIPDFLL 964
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1609515 1612409 + Lsi02G001890.1 Lsi02g00189 654931

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00189 964 Pfam Adaptin N terminal region 31 542 IPR002553 GO:0006886|GO:0016192|GO:0030117
Lsi02g00189 964 MobiDBLite consensus disorder prediction 852 964 - -
Lsi02g00189 964 MobiDBLite consensus disorder prediction 869 892 - -
Lsi02g00189 964 MobiDBLite consensus disorder prediction 854 868 - -
Lsi02g00189 964 SUPERFAMILY ARM repeat 30 653 IPR016024 -
Lsi02g00189 964 MobiDBLite consensus disorder prediction 904 929 - -
Lsi02g00189 964 PIRSF AP3_delta 585 957 IPR017105 GO:0015031|GO:0030123
Lsi02g00189 964 PIRSF AP3_delta 1 566 IPR017105 GO:0015031|GO:0030123
Lsi02g00189 964 Gene3D - 4 561 IPR011989 -
Lsi02g00189 964 MobiDBLite consensus disorder prediction 732 752 - -
Lsi02g00189 964 MobiDBLite consensus disorder prediction 732 784 - -
Lsi02g00189 964 PANTHER DELTA ADAPTIN-RELATED 3 963 IPR017105 GO:0015031|GO:0030123
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00189 K12396 AP3D; AP-3 complex subunit delta - csv:101214944 1735.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00189 Lsi-Chr2:1609515 Lsi04g00530 Lsi-Chr4:4882703 4.23E-29 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g298 . Blo16g00133 . . . Bpe13g00358 Bma06g00048 . Cmo13g01058 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00189 Csa01g00671 Chy12g01431 Cme12g01869 . . Bda11g01772 . . . . . Sed08g2188 . . . Cma18g00047 Car13g00851 Car18g00041 Cpe09g01133 . Bhi08g01241 Tan05g2259 Cmetu12g1441 Lac10g0245 Hepe07g2382 . . Cla04g01083 Cam04g1135 Cec01g1645 Cco01g1694 Clacu04g1163 Cmu04g1144 Cre01g1440 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009579 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00189 Lsi_Chr02 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0