Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00190 ATGACTGTAAATGCCAAAACCAAAATGGCTAATGATCAGCTGAAGCATTCTCCATCTCAGTTTTCCCAAATCTTCCATTTTCTCTTCTTACTTATCGGCTTCTCAATTGGTATGGCCATCAGTTTGAACCTCAAGAGCTTCTCATCATTCTTTTCCTTTCCATCTTCACCTTCAACAACACTAGTGTTTATCAGACAACAGCAGAAGCAAACTCCGGCCTCATCGTCATCGTCACCACCAGCACTTCAACCGCCGTCTCCTTTGGTTGACTTCTCCAACATGAATCAGTTTTTTGAGGCGAACGTAGAGCCGCCTCTGATGCATAGAATGAACGATGATGAAGTGTTTTGGAGGGCATCAATGGTTCCAATGATAAAAGAGTTTCCATATGAACGTGTGCCAAAAATTGCTTTCATGTTTCTGATAAAAGGGGCATTGCCTTTAGCTCCTTTGTGGGAAATGTTCTTCAAAGGACATGAACATTTGTTTTCAATTTATGTGCATACTCATCCATTGTATAATGTTTCTTCTTCTCTGCCTCCAAACTCTGTTTTCTATGGAAGAAGAATCCCAAGCCAGGCAGTGCAATGGGGAAGACCCTCCATGATCGATGCTGAGCGCCGCCTTCTAGCGAATGCCCTTCTCGACTTTTCTAATGAAAGATTTATCCTCCTCTCTGAAACTTGTATTCCTCTCTACAACTTCACAATTGTCTACAATTACCTCATTAATTCTCAACACACCTTCGTTTCTTCCTATGACGATCCTCGAAAAATCGGTCGTGGTCGTTATAACCCCAAGATGTTTCCCATCGTGTCGATCGCTGATTGGCGAAAAGGATCGCAGTGGTTCGAAGTTGATCGAACGGTGGCCGTTGAGATAATCTCCGATAAAACATATTACCCTATTTTCAAAGACCATTGCGGACCGCCGTGTTACATGGATGAGCATTACATTCCTACGTTGGTTAATATTGTTTTGCCGGACCGGAATTCCAACAGAACCGTTACTTGGGTTGATTGGTCCAAAAACGGTCCGCATCCCGGCAGATTTGGGAGGCGGGAGATCTCGGTCGAGTTTTTGAACCGGGTCCGGTTCGGATTTAATTGTACTTATAATAATGGAAACGACACCGTTTCCCTATGCTTTCTGTTTGCTCGGAAATTCATGCCGGATTCTTTACATCCTCTGCTGAAGATTTGGCCATCTCTGTTGGAAGGTTTGCAACGGCAGCCGCACATGGCGGAGCCGACGGCGAAGGTCCTCCAGGGCGTTCAGTTTCATCAACTTAGTAGCCTTATATCTCACTTTCTTGTGTTTGGGTTAGGATTGGTTATTGGGATTAGTTTTAATTTCTCGATTAGTGGATTTTCTTCGACTTTTCAGTTCAGCCAGTGGCCAGTTACTCCGCCGCCGCTTCCGGCGGTGGTGGTGGGGTTGAGGGAATTCAGGAGCTCAAAAAATGTGGGCCAGGAGATGAGCGACGGGGAGTTGGTTCCTCGGATGAGAAAGTTACCAGTAAAGGGAACGGGGAAGGTGGCGTTCATGTTTTTAACGAGAGGAGATTTGCCGTTAAGGGCACTTTGGGAAAGATTTTTCAATGGAAATGAAGGCTTTTACTCAATTTATGTGCATTCTCATCCTTCTTTCAATGAAACTTACCCAAATAATTCTGTCTTTCATGGCCGTACCATCCCTAGTAAGGAAGTTGAATGGGGGCAGCCGAGCATGATTCAAGCAGAGCGACGTCTTTTAGCGAACGCTCTTCTCGACTTCTCTAACCAACGATTCATCCTTCTTTCCGAGTCTTGCATTCCCGTCTTCAATTTCACCACCGTCTACACTTATCTCATGGGCTCGGCCCATATCTTTGTCGAGTCCTACGACTTACCGGGCCATTTGGGCCGCAACCGCTACAGGCCCAACATGAAGCCCACAATTACCAAGGCCCAGTGGCGGAAAGGCTCTCAGTGGTTCGAAATGGACCGACGGACGGCAACGTCGGTGGTGGTGGACCAGAAGTACTTTCCACTCTTCGAAAAGCACTGCCGCCCGAGTTGCATTTCGGATGAGCACTACTTGGCGACGATGATGAGTATAGAGTTCGGGGAGAGGAATTCGAACCGGACGCTGACTTGGACCGACTGGTCGAAGCAGGGGCCTCACCCGACCGGGTTTGGGAGCGGCAACGTCACGGTTGGGCTTTTGAAAAGTATAAGGAACGGCAGCACGTGCGAGTACAATGGACAAAGCACTAGAATTTGCCATTTGTTTGCGAGAAAATTTATGGCAAGTGGTTTGGATCGGCTGCTGGAAATTGCTTCACAAGTCATGTTCATCCGTTGA 2346 46.72 MTVNAKTKMANDQLKHSPSQFSQIFHFLFLLIGFSIGMAISLNLKSFSSFFSFPSSPSTTLVFIRQQQKQTPASSSSSPPALQPPSPLVDFSNMNQFFEANVEPPLMHRMNDDEVFWRASMVPMIKEFPYERVPKIAFMFLIKGALPLAPLWEMFFKGHEHLFSIYVHTHPLYNVSSSLPPNSVFYGRRIPSQAVQWGRPSMIDAERRLLANALLDFSNERFILLSETCIPLYNFTIVYNYLINSQHTFVSSYDDPRKIGRGRYNPKMFPIVSIADWRKGSQWFEVDRTVAVEIISDKTYYPIFKDHCGPPCYMDEHYIPTLVNIVLPDRNSNRTVTWVDWSKNGPHPGRFGRREISVEFLNRVRFGFNCTYNNGNDTVSLCFLFARKFMPDSLHPLLKIWPSLLEGLQRQPHMAEPTAKVLQGVQFHQLSSLISHFLVFGLGLVIGISFNFSISGFSSTFQFSQWPVTPPPLPAVVVGLREFRSSKNVGQEMSDGELVPRMRKLPVKGTGKVAFMFLTRGDLPLRALWERFFNGNEGFYSIYVHSHPSFNETYPNNSVFHGRTIPSKEVEWGQPSMIQAERRLLANALLDFSNQRFILLSESCIPVFNFTTVYTYLMGSAHIFVESYDLPGHLGRNRYRPNMKPTITKAQWRKGSQWFEMDRRTATSVVVDQKYFPLFEKHCRPSCISDEHYLATMMSIEFGERNSNRTLTWTDWSKQGPHPTGFGSGNVTVGLLKSIRNGSTCEYNGQSTRICHLFARKFMASGLDRLLEIASQVMFIR 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1612454 1620917 + Lsi02G001900.1 Lsi02g00190 654932

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00190 781 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN 497 777 - -
Lsi02g00190 781 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN 8 406 - -
Lsi02g00190 781 Pfam Core-2/I-Branching enzyme 136 364 IPR003406 GO:0016020|GO:0016757
Lsi02g00190 781 Pfam Core-2/I-Branching enzyme 513 740 IPR003406 GO:0016020|GO:0016757
Lsi02g00190 781 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 497 777 IPR044174 GO:0016757
Lsi02g00190 781 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 8 406 IPR044174 GO:0016757
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00190 - - - csv:101207079 737.258
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00190 Lsi-Chr2:1612454 Lsi04g01440 Lsi-Chr4:22129623 1.20E-101 dispersed
Lsi05g00415 Lsi-Chr5:5242144 Lsi02g00190 Lsi-Chr2:1612454 1.18E-81 transposed
Lsi02g00190 Lsi-Chr2:1612454 Lsi06g01318 Lsi-Chr6:23759581 9.64E-123 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g296 . . . . . . . . . . Cma10g00306 . Car10g00291 . . Cpe20g00129 . . . . . . . . . . . . . . . . . Cone13ag0308 . Lsi02g00190 Csa01g00672 Chy12g01429 Cme12g01867 . . . . . . . . Sed08g2189 Cmo10g00327 . . . Car13g00850 . . . Bhi08g01242 Tan05g2258 Cmetu12g1703 Lac10g0246 Hepe07g2381 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002679 1 2 1 1 1 2 2 2 2 2 1 2 0 2 2 2 2 6 2 2 2 3 2 2 2 1 2 2 2 3 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00190 Lsi_Chr02 FPKM 4.595897 5.407844 2.967533 2.315704 14.866566 12.176807 12.351098 1.492517 1.279952 1.191768