Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00193 ATGTCTTCTTCTCCCAAATTATTACCAAAATTGAATTCCAGATCCTTCCCATTTCTTCTTTCACAACTTTATTTGAGTATTATGCTCCTCATTCTGCTCAACTCTTCTCCTGATTCCTCTGCTTATTATGATGAATGGTTCTTCAACTGCAAAGATTCGTTGAAATGCGACAGTATTCCTACGATGGAATTTCCTCTTTGGCGAAATAATGGAACAGAAACTTGTGGTGGTTATCCCGAGTCAATGAAGCTCAAATGTGATGGAGGCCGTGCAGCCATAGAAATTATGGGAGCATTTTACCAACTCCTGGGTGTTAATATAAACGACGAAATCTTTATAATAGCTGAAACTGGCTTTTCAGATCGATTTTGTTTCCCAGAAGGAAACATTTCGTCAAGTTCGGTGTATGCGATAATTTCTGTATATCATGACTGCGGGCAAGACAAAACTTCTTGTTCTGGAACTGAATTTAGCTACATGTCAATTGAAAACATAACCCGGTCTAATCTTGATGAATATTGTTCGATAAGTGCAGTAGTGCCAATTCCAGAATTGTTGATAAAAGAAATTGGTGGTGGTTGGCAAAAATTAGGGCAGCGTATGATAGCAGAGTTTAAGTCAGGGCGGAAGGTTGATGGTGAAGTATGCAGTAATTATTGCAATGTTTCTGGTGGTGTTTATGTTTATGATTTGCAATTTAATCAAACAACATGCTGCTGTCAATCTTCCATTGATGAGATTGAATTCTGTCCTTCCTCACAAGTTGTTGCAGCAACACGACACGCTTCTCCATCAGGATCGGGAAAGTCAATTACATCGAAAAAAACACTCTCTATAGGAGGCATAATTTTGACAATCTTTATCGTCATCCCTTTCATCTGCTACACAAGGAAAATGACAGTTAGCCGCTCAAACAAACAAGACATTATTGAAGAAACCATAAAAAGATATTCCACACAAATACCAAAGCGATATACTTACTCAACGCTGAAGAAAATCACAGATTCTTTCAAGAACAAGCTTGGCCAAGGAGGGTTCAGCACAGTCTACAAAGGAAAGCTACCGGATGGTCGCGAAGTTGCCGTAAAACTTCTGAATGAATCCAAAGAAAATTGCCAAGATTTTATCAATGAAGTCATAAGCATCACAACAACTTCCCATATAAACATAGTCACTTTCTTGGGGTTCTGCTACGAGCGGAACAAAAGAGCTTTGATTTATGAGTACATGCCTAAAGGGTCATTGGACAAATACATATTTCATAAAGGGCTAGAAAAAAATAAAGTTGAATTGAATTGGAAGACACTGTACAACATCATTGTGGGCGTGGCTCGAGGATTAGAATACTTGCATCGTGGCTGCAATACAAGGATTCTACATTTTGATATCAAGCCACACAACATTCTTTTGGACAATGAGTTCTGCCCCAAGATCTCGGATTTTGGGCTTGCCAAGCAATGCAGGGGAAAACTGAGTCATGTGTCCATGACAGGGGCAAAGGGGACGATAGGATTCATGGCTCCAGAAGTAATAATTAGAAGCTTTGGGAAAGTTTCACACAAGTCGGATGTTTATAGCTATGGAATGTTGGTTCTTGAGATGGTTGGTGAAAGGCAGAGTCCCAATAAAGGAGTGGGAGACAACAGTGAAGAGTATTTTCCTGATTGGATATACAAGAATCTTGAAGAATGTGAAATATATAGAAATTGTAAGCAGTGGGGAGAAACAGAGGAAGAAGAAGAAATGGCCAGAAAAATGGTGGTTGTGGGTTTGAATTGCATTCAGACTTTGCCGGACGACCGGCCGTCGATGACTGAGGTAGTGGCTATGTTGGAAGGAAGTGTTGATGGTTTACAGATTCCACCGAAACCGACCCTCCTCGGACCTCCTGCTGCAGCTGCTTCTTCTTCCACCTCATAA 1920 40.26 MSSSPKLLPKLNSRSFPFLLSQLYLSIMLLILLNSSPDSSAYYDEWFFNCKDSLKCDSIPTMEFPLWRNNGTETCGGYPESMKLKCDGGRAAIEIMGAFYQLLGVNINDEIFIIAETGFSDRFCFPEGNISSSSVYAIISVYHDCGQDKTSCSGTEFSYMSIENITRSNLDEYCSISAVVPIPELLIKEIGGGWQKLGQRMIAEFKSGRKVDGEVCSNYCNVSGGVYVYDLQFNQTTCCCQSSIDEIEFCPSSQVVAATRHASPSGSGKSITSKKTLSIGGIILTIFIVIPFICYTRKMTVSRSNKQDIIEETIKRYSTQIPKRYTYSTLKKITDSFKNKLGQGGFSTVYKGKLPDGREVAVKLLNESKENCQDFINEVISITTTSHINIVTFLGFCYERNKRALIYEYMPKGSLDKYIFHKGLEKNKVELNWKTLYNIIVGVARGLEYLHRGCNTRILHFDIKPHNILLDNEFCPKISDFGLAKQCRGKLSHVSMTGAKGTIGFMAPEVIIRSFGKVSHKSDVYSYGMLVLEMVGERQSPNKGVGDNSEEYFPDWIYKNLEECEIYRNCKQWGETEEEEEMARKMVVVGLNCIQTLPDDRPSMTEVVAMLEGSVDGLQIPPKPTLLGPPAAAASSSTS 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1664990 1668211 - Lsi02G001930.1 Lsi02g00193 654935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00193 639 Gene3D Phosphorylase Kinase; domain 1 307 409 - -
Lsi02g00193 639 Gene3D Transferase(Phosphotransferase) domain 1 410 619 - -
Lsi02g00193 639 SMART serkin_6 335 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00193 639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Lsi02g00193 639 Pfam Protein tyrosine and serine/threonine kinase 337 611 IPR001245 GO:0004672|GO:0006468
Lsi02g00193 639 PANTHER RUST RESISTANCE KINASE LR10-RELATED 33 637 IPR045874 GO:0004672
Lsi02g00193 639 MobiDBLite consensus disorder prediction 620 639 - -
Lsi02g00193 639 ProSitePatterns Protein kinases ATP-binding region signature. 341 363 IPR017441 GO:0005524
Lsi02g00193 639 SUPERFAMILY Protein kinase-like (PK-like) 314 612 IPR011009 -
Lsi02g00193 639 PANTHER - 33 637 - -
Lsi02g00193 639 ProSiteProfiles Protein kinase domain profile. 335 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00193 Lsi-Chr2:1664990 Lsi02g00204 Lsi-Chr2:1702821 0 dispersed
Lsi02g00193 Lsi-Chr2:1664990 Lsi02g00195 Lsi-Chr2:1675631 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83331 PF07714 PK_Tyr_Ser-Thr 2.10E-50 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00193 - - mcha:111008789 745.732