Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00195 ATGAAAACTTCCGTCCCTCTCTTCCTCTTCTCTTTCTTCTACACAATCCTCTGGTTTGATCTTCCGCTCTGTTTCGGCAATGTCGCCAACGAGGAATTTAAAGCTTGCGGAGTCTATTACAACTGCGGAGATTTGGTCAACATCTCGTATCCGTTTTGGGGGAATGAGCGGCAGGAGTTTTGCGGTCGGCCAGAATTCAAGCTCAATTGCAAAGACAACAAAACCACCACGATTCAAATGAATTCTATGGTATTCAATGTTCTGAGCATCAGCAAATCGGATCATAAAATGACGATAGCAAGATCAGACCTGTTCGATGATTACTGCCCTAACAATCAAGTCGAAGCAGCGACGTTGAATTACCAACTGTTCAAGTATTCTTCGAATGATGTGAATCTAACCGTATGGTACGATTGTCCGGCGATACAAGGAATTCCACGGGATTTCACGTTTGAGTGCGGATCGGAAGGGGAAAAGAGTGGGAGTGGGAGAGCGAATTATGCTTTAGAACAAAGGGCGATGAATTGGAGTTCATATATTAGAGATTGTAGAATGAAAATCGAAGTGACAATTACGATGGATGTATTGAAAGAAGGGGAAATGAACAGAACAATGGTGGTGGAAAGGGGAGTGAAAGAAGGGTTTGAAGTGGAATACGGGGATTACTCTACGATAGCATGTGAGGGATGCAAGGAATACGGCGGCGCGTGTAGTGGAAACGCGACTCAAGAGTTCCAGTGCATTTGTGGAAATGGCGATGTACATCCTTACGTTTGCCCACTTCCTGCTTCTCCGTCTGCTGGTGCTTTGGCAGCCATCAGTATGATAATAATGTCTATTATCATCATCTCCATCTACTACACGAGAAAAAGCATATTAAACAAAGACAAAATTGAGGAAATTATAAGGAGATATTCCACACAAACACCCAAGCGATATAGTTACTCAAAGCTGAAGAAAATCACAGACTCCTTCAACAACAAACTTGGCCAAGGAGGATTCAGCACAGTCTACAAAGGAAAGCTACCTGACGGACGCGACGTAGCTGTGAAACTTTTGAATGAGTCCAAAGAAAATGGCGAAGATTTTATGAATGAGGTTGTTAGCATCACCAGAACTTCGCATGTAAATATAGCCTCACTTATAGGTTTCTGCTACGAGAGGAAGAAAAGAGCTTTGATTTATGAATATATGCACAGAGGGTCATTAGATAAGTATATACCCCACAATGGGCAACAGAGAACCAACTTTAAGTTGGATTGGAATACACTTCATAGCATTATTATCGGTGTGGCACGAGGCTTAGAGTACTTGCATCGTGGTTGCAACACAAGGATTTTGCATTTTGACATCAAACCACACAACATTCTTTTGGATAGTGAGTTTTGTCCCAAGATTTCAGACTTTGGGCTTGCCAAACAATGCAAGGCCAAAGAAAGTCACGTGTCGATGACAGGGGTGAAAGGGACGGTAGGATTCATTGCACCCGAAGTAATATTCAGGAACTTTGGTAAGATTTCTCACAAGTCTGATGTTTATAGCTATGGAATGTTGGTTCTTGAAATGGTGGGAGCAAGAAAGAATCCTAATGATGGAGTGGAGCAGAGGAGTGAAGAATACTTTCCTGATTGGATATATAAGGATCTTACACAAAGTGAAATATATGGAGGCTGTTGGTGGAGCAACACTGAGGAAGAAGAAGAAATAGCAAGAAAAATGATAATTGTGGGGTTGCATTGTATTCAGACATTGCCCGATGACAGGCCGTCAATGACCGATGTGGTTGTGATGTTAGAAGGTAGTGTTGATGGCTTACAGATTCCACCAAAACCCAACTTGTTTGGACCTCCTTCCACTGATCTACTCCAAGCTGCTGCTGCTGCTGCTTCTTCTTCATTGAACTCATACTAA 1911 42.44 MKTSVPLFLFSFFYTILWFDLPLCFGNVANEEFKACGVYYNCGDLVNISYPFWGNERQEFCGRPEFKLNCKDNKTTTIQMNSMVFNVLSISKSDHKMTIARSDLFDDYCPNNQVEAATLNYQLFKYSSNDVNLTVWYDCPAIQGIPRDFTFECGSEGEKSGSGRANYALEQRAMNWSSYIRDCRMKIEVTITMDVLKEGEMNRTMVVERGVKEGFEVEYGDYSTIACEGCKEYGGACSGNATQEFQCICGNGDVHPYVCPLPASPSAGALAAISMIIMSIIIISIYYTRKSILNKDKIEEIIRRYSTQTPKRYSYSKLKKITDSFNNKLGQGGFSTVYKGKLPDGRDVAVKLLNESKENGEDFMNEVVSITRTSHVNIASLIGFCYERKKRALIYEYMHRGSLDKYIPHNGQQRTNFKLDWNTLHSIIIGVARGLEYLHRGCNTRILHFDIKPHNILLDSEFCPKISDFGLAKQCKAKESHVSMTGVKGTVGFIAPEVIFRNFGKISHKSDVYSYGMLVLEMVGARKNPNDGVEQRSEEYFPDWIYKDLTQSEIYGGCWWSNTEEEEEIARKMIIVGLHCIQTLPDDRPSMTDVVVMLEGSVDGLQIPPKPNLFGPPSTDLLQAAAAAASSSLNSY 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1675631 1679939 - Lsi02G001950.1 Lsi02g00195 654937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00195 636 Gene3D Transferase(Phosphotransferase) domain 1 398 606 - -
Lsi02g00195 636 Pfam Protein kinase domain 326 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00195 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 446 458 IPR008271 GO:0004672|GO:0006468
Lsi02g00195 636 Gene3D Phosphorylase Kinase; domain 1 295 397 - -
Lsi02g00195 636 SMART serkin_6 323 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00195 636 Pfam Wall-associated receptor kinase galacturonan-binding 41 101 IPR025287 GO:0030247
Lsi02g00195 636 ProSitePatterns Protein kinases ATP-binding region signature. 329 351 IPR017441 GO:0005524
Lsi02g00195 636 PANTHER RUST RESISTANCE KINASE LR10-RELATED 30 619 IPR045874 GO:0004672
Lsi02g00195 636 Pfam Wall-associated receptor kinase C-terminal 159 251 IPR032872 -
Lsi02g00195 636 PANTHER - 30 619 - -
Lsi02g00195 636 SUPERFAMILY Protein kinase-like (PK-like) 300 598 IPR011009 -
Lsi02g00195 636 ProSiteProfiles Protein kinase domain profile. 323 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00195 Lsi-Chr2:1675631 Lsi02g00204 Lsi-Chr2:1702821 0 dispersed
Lsi04g02189 Lsi-Chr4:28945214 Lsi02g00195 Lsi-Chr2:1675631 9.92E-83 dispersed
Lsi02g00193 Lsi-Chr2:1664990 Lsi02g00195 Lsi-Chr2:1675631 0 proximal
Lsi02g00195 Lsi-Chr2:1675631 Lsi02g00197 Lsi-Chr2:1682097 1.86E-34 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83333 PF00069 Pkinase 3.10E-47 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00195 - - csv:105434802 957.977