Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00197 ATGAGAACACATCTCACATTGACTTACTTTCTAAGCCCCAGCATCAGCAAAATCATCTTCATAGCCTTCATCTCGTTCCATTTTGCTCCATGTTTCAGCCAAGACGCCCTCCATGAATTTAAAGCATGTGGTGTGAATTACTACAATGGCAAAGACTTGGCAAACATCTCCTATCCCAAAATTGGGAGGCCAAAACTGGATTACACAATTGGAATGAATTCATTGGAATACAGCGTTCTGAAGATCAACCAGTCGGATCATCGAGTTACAATCACGAGAGAAGAGCACTTTGATAATTTTAGCGCAGTAAATAAAATGGAAACAGCAACTCTAGATTACCATGTGTTTATGTATTCTTCCAATGACCGAAACATCTCTGTCTGGTACGATTGTCCCCAAGAAGAGAAGAATTGGGAGAATTACAGATTTCCTTGTGGCTCAAAACAGGGAAAACAGGGGAGAACCAGCTATGTTTTTGAAACAAGTGGACAAATTGGAGGATGTAAAATGAAGATCGAAGTGGTAGTTATGATAAACAGGTCGAAAGGTGGAATGAACAAAACGAGGCCGGCTCTGGGGGTGGAGAAAGATAGGGAACGATGGTTCAGCTTCAGATACAAGAATCTGTATGACAGGAAAGAAGGCAGAAAGAACATGATGGGTCTATTGGAAAAGGCTACGAGACGTAGGTTCAACAACATGTTCCAGAGACTACAAGCGATGGAGGGATTGAAAGAAGGTCGAAAGAACAAACTGGGCCTGCAGGAGAAGGCTATATGGTTCGACTTCATATACAAGAGGTCCAGATATTATAGAAGGGATGAAATAGAGGCATTAAAATTCGAAGGTAGAAAGAATAGAATGAGTCTGTTGGAGAAGCCAGCAACTAGGACGAAACAAGAGTTGGAAGTTGAATACAAGAATCTGTATACGATAGCATGTGATGCATGTAGAGAAACCCATGGAAAGTGTGGAGAAAATGCAACGTACCAGTTTTACTGCATTTGTGAAACCCAAGATCAGCATCGTCCTTACGTCTGCATAGCTTCTCCTCGACCTGTTGCAATTGCTTCAGGAAGCATAATTTTAACAATCTCCATCATCATCTTCATATACTCCACAAGGAAACACGACGACAAGAAAATTGAGGAAATGATAAGGAGATATTCCACACACACACCAAAGCGGTACCGTTACTCACAGCTAAAGAAAATCACAAATTCCTTCACGAACAAGCTTGGCCAAGGAGGATTTAGCACCGTCTACAAAGGAAAACTACGAGACGGTCACGACGTGGCAGTGAAACTCTTGAATGAATCAAAAGAAAACGGCGAAGAGTTTATGAATGAAGTTGTTAGCATCACCAAAACATCGCATGTAAACATAGCCACTCTCTTGGGATTTTGCTATGAGCGAAGTAAAAGGGCTTTAGTTTATGAATATATGTCCAATGGGTCATTGGAGAAGTATATATTTCAAAGAGGGCTACAGATCAAAAATGGTGTGGAGTTGAGTTTGAGCACACTCCATAACATCGTTATTGGTGTGGGTCGAGGATTAGAGTATTTGCATTGCCGCTGCAACACAAGGATCTTGCATTTTGACATCAAACCAGACAACATTCTTTTGGACAATAATTTCTGCCCCAAGATCTCAGACTTTGGGCTTGCAAAGCAATGCATGGCCAAAGAGAGTCATATGTCAATGATAGGTATGAAAGGGACTGTAGGATTCATGGCGCCTGAAGTAATATTTAGAAATCTTGGCAAAGTTTCCCACAAGTCTGATGTTTATAGTTATGGAATGTTGGTTCTTGAGATGTTGGGTGAAAAAAAGTGTCCCAATGAAGGAGTGGGGCAGAGCAGTGAAGAGTACTTTCCTGATTGGATATATAAGGATCTTATACGACATGAAATAGATGGAGGTTCTTATCGCTGGGGCAACACAGACGAGGAAGAAGAAATGGCAAGAAAAATGATAATTGTGGGGTTGCATTGCATTCAAACTTTGCCCGATGTCAGGCCGTCGATGACTGATGTGGTTGCAATGTTAGAAGGCAGTATTGATGGCTTACAAATTCCACCAAAACCCAACTTGTATGGACCTCCTGCAACTGATCTACTCCAAGGTGCTGCTGCTTCTTCTTCATCCAACTCGTACTAA 2163 41.52 MRTHLTLTYFLSPSISKIIFIAFISFHFAPCFSQDALHEFKACGVNYYNGKDLANISYPKIGRPKLDYTIGMNSLEYSVLKINQSDHRVTITREEHFDNFSAVNKMETATLDYHVFMYSSNDRNISVWYDCPQEEKNWENYRFPCGSKQGKQGRTSYVFETSGQIGGCKMKIEVVVMINRSKGGMNKTRPALGVEKDRERWFSFRYKNLYDRKEGRKNMMGLLEKATRRRFNNMFQRLQAMEGLKEGRKNKLGLQEKAIWFDFIYKRSRYYRRDEIEALKFEGRKNRMSLLEKPATRTKQELEVEYKNLYTIACDACRETHGKCGENATYQFYCICETQDQHRPYVCIASPRPVAIASGSIILTISIIIFIYSTRKHDDKKIEEMIRRYSTHTPKRYRYSQLKKITNSFTNKLGQGGFSTVYKGKLRDGHDVAVKLLNESKENGEEFMNEVVSITKTSHVNIATLLGFCYERSKRALVYEYMSNGSLEKYIFQRGLQIKNGVELSLSTLHNIVIGVGRGLEYLHCRCNTRILHFDIKPDNILLDNNFCPKISDFGLAKQCMAKESHMSMIGMKGTVGFMAPEVIFRNLGKVSHKSDVYSYGMLVLEMLGEKKCPNEGVGQSSEEYFPDWIYKDLIRHEIDGGSYRWGNTDEEEEMARKMIIVGLHCIQTLPDVRPSMTDVVAMLEGSIDGLQIPPKPNLYGPPATDLLQGAAASSSSNSY 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1682097 1685584 - Lsi02G001970.1 Lsi02g00197 654939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00197 720 PANTHER - 34 211 - -
Lsi02g00197 720 ProSitePatterns Protein kinases ATP-binding region signature. 413 435 IPR017441 GO:0005524
Lsi02g00197 720 Gene3D Transferase(Phosphotransferase) domain 1 482 690 - -
Lsi02g00197 720 PANTHER RUST RESISTANCE KINASE LR10-RELATED 34 211 IPR045874 GO:0004672
Lsi02g00197 720 Pfam Protein kinase domain 410 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00197 720 ProSitePatterns Serine/Threonine protein kinases active-site signature. 531 543 IPR008271 GO:0004672|GO:0006468
Lsi02g00197 720 ProSiteProfiles Protein kinase domain profile. 407 688 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00197 720 PANTHER - 298 706 - -
Lsi02g00197 720 SMART serkin_6 407 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00197 720 Gene3D Phosphorylase Kinase; domain 1 379 481 - -
Lsi02g00197 720 PANTHER RUST RESISTANCE KINASE LR10-RELATED 298 706 IPR045874 GO:0004672
Lsi02g00197 720 SUPERFAMILY Protein kinase-like (PK-like) 385 685 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00197 Lsi-Chr2:1682097 Lsi02g00204 Lsi-Chr2:1702821 9.63E-24 dispersed
Lsi02g00201 Lsi-Chr2:1694178 Lsi02g00197 Lsi-Chr2:1682097 1.74E-74 dispersed
Lsi02g00206 Lsi-Chr2:1719801 Lsi02g00197 Lsi-Chr2:1682097 2.23E-13 dispersed
Lsi02g00195 Lsi-Chr2:1675631 Lsi02g00197 Lsi-Chr2:1682097 1.86E-34 proximal
Lsi02g00197 Lsi-Chr2:1682097 Lsi02g00198 Lsi-Chr2:1686219 1.09E-25 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83335 PF00069 Pkinase 2.70E-46 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00197 - - csv:105434800 635.565