Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00202 ATGGCAGGAAAACTTGATATCTGGAAAAAGGCCGTCATAGGTAAATTATTATTCTCATGGTTGAAAAGTGCATCTGCTTTGGGAACCATCATTCTCATAATCTCTATTATCATTATCTCCATCTACTACACGAGAAAAGCCATATCAAACAAAGATAAAATTGAGGAAAGTATAAGAAGTTATTCCACACAAACGCCTAAGCGATATGGTTACTCAAAGCTGAAGAAAATCACAGACTCCTTCAAGAACAAACTTGGCCAAGGAGGATTTAGCACTGTCTACAAAGGAAAGCTACCCGACAGACATGACGTAGCTGTGAAACTTTTGAATGAGTCTAGTGAAAATGGCCAAGATTTTATGAATGAAGTTGTTAGCATCACCAGAACTTCACATGTAAATATAGTCTCATTCTTAGGTTTCTGCTACGAGAGGAAGAAAAGGGCTTTGATTTATGAATATATGCCTAGAGGGTCATTAGATAAGTATATATCCCACAAAGGGCCACAGAGAAACAATGTTGAGTTGGATTGGAACACACTTTATAGGATTGTTATCGGTGTGGCGCGAGGTTTAGAGTATTTGCATCGTGGTTGCAACACAATGATTTTACATTTTGACATCAAACCACACAACATACTTTTGGATAATGATTTTTGTCCCAAGATCTCAGATTTTGGGCTTGCCAAGCAATGCAAGGCCAAAGAAAGTCATGTGTCGATGACNAATATTTTTAAGAAAGAGTTGCCAAATGCATGA 756 37.57 MAGKLDIWKKAVIGKLLFSWLKSASALGTIILIISIIIISIYYTRKAISNKDKIEESIRSYSTQTPKRYGYSKLKKITDSFKNKLGQGGFSTVYKGKLPDRHDVAVKLLNESSENGQDFMNEVVSITRTSHVNIVSFLGFCYERKKRALIYEYMPRGSLDKYISHKGPQRNNVELDWNTLYRIVIGVARGLEYLHRGCNTMILHFDIKPHNILLDNDFCPKISDFGLAKQCKAKESHVSMTNIFKKELPNA 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1695225 1696062 - Lsi02G002020.1 Lsi02g00202 654944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00202 251 SUPERFAMILY Protein kinase-like (PK-like) 54 238 IPR011009 -
Lsi02g00202 251 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Lsi02g00202 251 PANTHER RUST RESISTANCE KINASE LR10-RELATED 41 241 IPR045874 GO:0004672
Lsi02g00202 251 ProSiteProfiles Protein kinase domain profile. 79 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00202 251 Gene3D Phosphorylase Kinase; domain 1 50 153 - -
Lsi02g00202 251 SMART serkin_6 79 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00202 251 Gene3D Transferase(Phosphotransferase) domain 1 154 246 - -
Lsi02g00202 251 PANTHER - 41 241 - -
Lsi02g00202 251 ProSitePatterns Protein kinases ATP-binding region signature. 85 107 IPR017441 GO:0005524
Lsi02g00202 251 Pfam Protein kinase domain 82 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00202 Lsi-Chr2:1695225 Lsi04g00233 Lsi-Chr4:2365434 4.63E-114 dispersed
Lsi02g00202 Lsi-Chr2:1695225 Lsi02g00204 Lsi-Chr2:1702821 5.32E-115 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83338 PF00069 Pkinase 9.50E-35 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00202 - - cmo:103498644 364.385