Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00207 ATGACTATCAAAACTCCTGCAACACCAGCTTCGAAAACAGAGAGGACACCAGCATCAACACCTGGAGGACCTCGATCTAAGGAAGAGAAGATCGTTGTTACTGTGCGGTTAAGGCCTCTGAGTAAAAAGGAGCAGCAAGCGAAGGATCAAATGGCATGGGAGTGTATTGATGATAATACGATCGTGTACAAACCTCAGCCTCAGGAGCGTCAAACTCAACCGGCCTCGTTTACATTTGATAAAGTTTTCAGTCCCGCTTCTTTGACTGAGGCAGTATATGAGGAAGGAGTAAAGAATGTTGCCTTATCTGCTCTAATGGGCATCAATGCCACCATATTCGCCTATGGACAAACTAGTAGTGGAAAGACATTTACAATGAGGGGGATAACTGAGAAAGCTGTTAATGATATCTACAAACATATTAGTAATACACCCGAGAGAGATTTTACAATAAGAATTTCAGGACTGGAAATATATAATGAGAATGTTAGGGATCTATTGAATACAGAATCAGGTCGGAATCTAAAGCTTCATGATGATCCAGAGAAAGGTACGATGGTTGAGAAATTAGTAGAGGAAACGGCGAATAATGATCAACATTTGAGACATTTGATTAGCATCTGTGAGGCTCAAAGACAAGTTGGTGAAACTGCCTTAAATGACTATAGCTCTCGGTCACACCAGATAATAAGGCTGACAATTCAAAGTACCCTACGAGAAAATTCAGATTGCGTCAGATCTTTTGTGGCAAGCTTGGTAGGAAAAATTATTTTCCATTCTTTTATCTACAATGTTGTTCTTTCGTATCAACTTTTCCTCGGACTTACTAATTTCAACATTATGCAGAATTTTGTTGATCTAGCTGGAAGTGAGAGAGCTTCACAGACACATGCCGATGGTGCTAGGCTAAGAGAAGGCTGTCATATTAACCTTAGTTTGATGACGCTCACAACTGTGATCAGAAAGCTAAGTCTTGGAAAGAGAAGTGGTCATATACCTTATAGAGACTCAAAACTCACCCGCATATTGCAGCACTCCCTAGGTGGAAATGCACGAACCGCCATTATTTGCACATTGAGTCCAGCCCTGACTCATGTTGAACAATCGCGGAACACTTTGTACTTTGCCACCCGGGCAAAGGAAGTGACTAATAACGCCCAAGTTAATATGGTTGTATCGGACAAACAGTTGGTCAAACATTTACAGAAGGAAGTTGCCAGGCTAGAAGCAGAATTGCGCACTCCTGATCCAAAAAGGGAGAAAGATCTAAAAATCCAGCAGATGGAAATGGAGATTGAAGAATTAAGACGACAAAGAGACCTTGCACAATCCCAGGTTGATGAGCTCCGCAGAAAACTTGAGGAGGATCCGCAGGGTTCTAACCCAATTGAATCTGCCCGTCCTCCAGTGAAAAAGTGCTTGTCCTTTACTGGTGTGTTGTCTCAGAAACTCGACGGAAAGGACCTTGGCCGTGGTATGATATTAAGGCAGTCAATGATGAGACAATCATCTACGGCTCCTTTCACACTTATGCATGAAATTCGCAAGCTGGAACATCTCCAGGAGCAGCTTGGGGAGGAAGCTAATAGAGCCCTCGAAGTATTGCAAAAGGAGGTGGCTTGTCACAGACTGGGGAACCAAGATGCAGCAGAAACAATTGCCAAACTACAAGCTGAAATAAGAGAGATGAGATCAGTCCGTTCAGAACCAAAAGAGGTTGAGGTTGGGAGCGCTATTGCTACTAACCAGAGTGTAGGTGCTAATCTTAAGGAAGAGATAACACGGCTTCATTCTCAAGGTAGCACCATTGCCAATTTAGAGGAACAGCTTGAAAATGTTCAGAAGTCTATTGACAAGTTGGTAATGTCTCTACCAAGCAATTATCAGCAGTTCATGAGCAGTGAATCAACCCCCAAACAAAAAAGTTATATCAAAAAGAAGAAATTGCTTCCTTTGGTCTCAAGTAATGTTGCCAACCGGCAAAACTTTTTAAGATCGCCATGCTCACCTTCAACAACTTCCCAGCAAGTACTGGAGTCCGATACTGAAAATAGATCTCCTGAGAATGATGATGTCATCTCATCTGAGATTCTGCTCGAGTCTGAGAAAGAAACTCCAACAAAGAGCGAAGAAGGTGGAGATGTCTCATCAAAGGAGAACACTCCTTGTTATCGAAGATCAAGTTCTGTGAACATGAAGAAGATGCAAAAGATGTTCCAAAATGCAGCAGAAGAAAACGTAAGAAGCATAAGAGCATATGTGACAGAGTTGAAAGAACGTGTAGCTAAACTGCAGTACCAAAAACAGCTACTTGTTTGTCAGGTCCTTGAGCTAGAAGCAAATGAAGCAGCTGGCAACAAATTAGATTGTGATGAAAACACATTTGAGCAAGATGACGACCAAGTTCCGTGGCATGTAACTTTCAGGGAGCAAAGGCAGCAGATTATTGAGTTATGGGATGCTTGCTATGTCTCCATTATTCACAGATCTCAGTTCTACTTGTTATTCAAGGGCGACGAGGCTGATCAGATTTATCTGGAAGTAGAGATGAGGCGCTTAACATGGCTACAGGATCACCTAGCAGAATTTGGCAATGCTAGTCCAGCTCACGTTGGAGATGAGCCAACAATTTCTCGCTCATCAAGCATGAGGGCATTGAGACGTGAAAGAGAGTTTCTTGCAAAGAGATTAACTTCACGTTTGACAGCAGAAGAAAGAGATGCTTTGTACATTAAATGGGAAGTGCCGCTTGAAGGGAAACAGAGGAAAATCCAATTTGTAAACAAGCTTTGGACAAATCCTCACGACCCAAAACATATTCAGGACAGTGCAGAGATAGTGGCAAAGCTTGTTGGGTTTCGTGAAGGAGGCAACATGTCCAGGGAGATGTTTGAACTCAATTTTGTTGTTCCTTCCGACAAAAGACCATGGATCATGGGATGGAACCCAATTTCAAACCTTCTTAATTTGTGA 2973 42.35 MTIKTPATPASKTERTPASTPGGPRSKEEKIVVTVRLRPLSKKEQQAKDQMAWECIDDNTIVYKPQPQERQTQPASFTFDKVFSPASLTEAVYEEGVKNVALSALMGINATIFAYGQTSSGKTFTMRGITEKAVNDIYKHISNTPERDFTIRISGLEIYNENVRDLLNTESGRNLKLHDDPEKGTMVEKLVEETANNDQHLRHLISICEAQRQVGETALNDYSSRSHQIIRLTIQSTLRENSDCVRSFVASLVGKIIFHSFIYNVVLSYQLFLGLTNFNIMQNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSLGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALTHVEQSRNTLYFATRAKEVTNNAQVNMVVSDKQLVKHLQKEVARLEAELRTPDPKREKDLKIQQMEMEIEELRRQRDLAQSQVDELRRKLEEDPQGSNPIESARPPVKKCLSFTGVLSQKLDGKDLGRGMILRQSMMRQSSTAPFTLMHEIRKLEHLQEQLGEEANRALEVLQKEVACHRLGNQDAAETIAKLQAEIREMRSVRSEPKEVEVGSAIATNQSVGANLKEEITRLHSQGSTIANLEEQLENVQKSIDKLVMSLPSNYQQFMSSESTPKQKSYIKKKKLLPLVSSNVANRQNFLRSPCSPSTTSQQVLESDTENRSPENDDVISSEILLESEKETPTKSEEGGDVSSKENTPCYRRSSSVNMKKMQKMFQNAAEENVRSIRAYVTELKERVAKLQYQKQLLVCQVLELEANEAAGNKLDCDENTFEQDDDQVPWHVTFREQRQQIIELWDACYVSIIHRSQFYLLFKGDEADQIYLEVEMRRLTWLQDHLAEFGNASPAHVGDEPTISRSSSMRALRREREFLAKRLTSRLTAEERDALYIKWEVPLEGKQRKIQFVNKLWTNPHDPKHIQDSAEIVAKLVGFREGGNMSREMFELNFVVPSDKRPWIMGWNPISNLLNL 990
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1725699 1734657 + Lsi02G002070.1 Lsi02g00207 654949

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00207 990 CDD KISc_CENP_E 30 382 - -
Lsi02g00207 990 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 416 IPR027417 -
Lsi02g00207 990 Coils Coil 391 411 - -
Lsi02g00207 990 MobiDBLite consensus disorder prediction 1 30 - -
Lsi02g00207 990 SMART kinesin_4 28 390 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi02g00207 990 MobiDBLite consensus disorder prediction 1 20 - -
Lsi02g00207 990 ProSiteProfiles Kinesin motor domain profile. 30 382 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi02g00207 990 PANTHER CENTROMERE PROTEIN E 14 252 - -
Lsi02g00207 990 PANTHER CENTROMERE PROTEIN E 276 989 - -
Lsi02g00207 990 Coils Coil 517 537 - -
Lsi02g00207 990 Pfam Domain of unknown function (DUF3490) 808 970 IPR021881 -
Lsi02g00207 990 Coils Coil 596 623 - -
Lsi02g00207 990 PANTHER KINESIN-LIKE PROTEIN KIN-7A 14 252 - -
Lsi02g00207 990 PANTHER KINESIN-LIKE PROTEIN KIN-7A 276 989 - -
Lsi02g00207 990 Coils Coil 546 566 - -
Lsi02g00207 990 MobiDBLite consensus disorder prediction 683 715 - -
Lsi02g00207 990 MobiDBLite consensus disorder prediction 446 468 - -
Lsi02g00207 990 MobiDBLite consensus disorder prediction 663 682 - -
Lsi02g00207 990 MobiDBLite consensus disorder prediction 663 729 - -
Lsi02g00207 990 Gene3D Kinesin motor domain 23 413 IPR036961 -
Lsi02g00207 990 Coils Coil 418 452 - -
Lsi02g00207 990 Pfam Kinesin motor domain 36 382 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi02g00207 990 PRINTS Kinesin heavy chain signature 217 234 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi02g00207 990 PRINTS Kinesin heavy chain signature 332 353 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi02g00207 990 PRINTS Kinesin heavy chain signature 107 128 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00207 K11498 CENPE; centromeric protein E - csv:101215425 1801.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00207 Lsi-Chr2:1725699 Lsi11g00112 Lsi-Chr11:1222600 0 dispersed
Lsi09g00364 Lsi-Chr9:3757399 Lsi02g00207 Lsi-Chr2:1725699 1.72E-24 dispersed
Lsi02g00207 Lsi-Chr2:1725699 Lsi08g01346 Lsi-Chr8:21749524 9.08E-39 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g285 Blo04g00833 Blo16g00131 . . . Bpe13g00360 Bma06g00050 . Cmo13g01049 Cmo18g00040 . . . . . Cpe20g00132 . . . . . . . . . . . . . . . . . . . Lsi02g00207 Csa01g00689 Chy12g01421 Cme12g01857 . . Bda11g01773 . . Bpe15g00531 Bma03g00900 . . . . Cma13g01010 Cma18g00049 Car13g00845 Car18g00043 Cpe09g01132 . Bhi08g01257 . . . . . . Cla04g01075 Cam04g1119 Cec01g1632 Cco01g1678 Clacu04g1145 Cmu04g1126 Cre01g1427 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001397 1 1 3 3 2 2 3 2 2 1 2 2 3 2 2 3 2 2 3 2 2 2 2 3 4 2 1 10 2 2 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00207 Lsi_Chr02 FPKM 55.017616 61.755634 49.42543 46.9272 18.55555 20.743382 16.64982 72.279648 77.091316 77.359795