Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00219 ATGGAGCTAATATTTGGATTGACATGGAATATCAATCTCCTCAAGTTGCATGCTTTTACTCATCTTCTTACTGACTCTAGTAATATCGAGGAGGATATTCGTGCATTAGAACTCGATCCACCAGACGTTAATGGGGTTCCTAATCCAGATGCGAAGATGGAGGAAGTTGTGAAATCCGATAATCTTGAAGAAGTGAAGGAGAACATATCTGCTAAGGAGAAGGAAGTTGCTTCGACTGAAAATGAAGATGAAGGGGATTTGGAGTTGGATCGCAAAAGACACTTGAATGTTGTATTCATTGGTCATGTTGATGCTGGCAAGTCCACAATTGGAGGCCAAATACTTTTCCTTAGCAATCAGGTTGATGAGCGTACAATCCAAAAGTACGAAAAAGAAGCAAAAGATAAAAGCAGAGAAAGCTGGTACATGGCCTATATCATGGACACAAATGAAGAGGAGAGAGTTAAGGGGAAAACTGTTGAAGTGGGAAGAGCGCATTTTGAAACCGAGACCACAAGGTTTACGATTTTGGATGCTCCGGGTCACAAAAGTTATGTCCCAAATATGATCAGTGGGGCATCACAAGCTGATATAGGGGTTCTGGTGAGTTATTACCCTCCCAGTTTTCTGCGCCTTGGCATTCTGGTAATTTCTGCTAGGAAAGGAGAATTCGAAACTGGATATGAGAGAGGTGGACAGACTCGTGAGCATGTTTTGCTGGCAAAAACTTTGGGTGTTGCTAAGCTTCTTGTTGTAGTGAATAAGATGGATGATCACACTGTAAAATGGTCGAAAGAAAGGTATGATGAGATAGAGACTAAGATGGCACCCTTCTTGAAGTCATCTGGTTACAATGTAAAGAAAGATGTCCAATTTTTACCTATATCTGGTCTTCATGGTATTAATATGAAAACAAGAGTGGATGAGAAAGTATGTCCGTGGTGGAATGGTCCGTGCTTCTTTGAAATCCTTGATACAATTGAAGGTCCACCAAGAAATCCAAAAGATCCATTTAGGATGCCTATCATTGACAAGTTCAAGGACATGGGAACAACTATTATGGGTAAAGTCGAATCTGGCACTGTGCGTGAGGGTGATTCCTTATTGGTAATGCCAAATAAGATACAGGTGAAAGTTACTGCTGTGATGTGTGATGAAAGTAAAGTTAAGAGTGCAGGACCTGGGGAAAATCTTCGTGTTAGAATATCTGGAATTGAAGAAGAAGATATAACGTCCGGGTTTGTGCTATCAAGCATTGCAAAACCAATACCCTGTGTTTCTGAGTTCATTGCACAGTTGCAGATTCTTGAGCTGCTGGATAATGCAATATTTACAGCTGGATATAAGGCGGTACTTCACATTCATGCTGTTGTTGAAGAATGTGAGATCATAGAGCTGCTACAGCAGATTGATCCGAAGACTAGAAAACCTATGAAAAAGAAAGTTCTCTTTGTGAAGAATGGTGCAGTTATTTTGTGCCGCGTCCAGGTCAATAACTTGATCTGCATTGAGAAGTTTTCCGATGTTCCTCAGCTTGGAAGATTTACACTTCGTACTGAAGGGAAGACGGTTGCCGTAGGAAAAGTCACTGATATTCCGTATGCAAGCAATTAA 1614 40.89 MELIFGLTWNINLLKLHAFTHLLTDSSNIEEDIRALELDPPDVNGVPNPDAKMEEVVKSDNLEEVKENISAKEKEVASTENEDEGDLELDRKRHLNVVFIGHVDAGKSTIGGQILFLSNQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVSYYPPSFLRLGILVISARKGEFETGYERGGQTREHVLLAKTLGVAKLLVVVNKMDDHTVKWSKERYDEIETKMAPFLKSSGYNVKKDVQFLPISGLHGINMKTRVDEKVCPWWNGPCFFEILDTIEGPPRNPKDPFRMPIIDKFKDMGTTIMGKVESGTVREGDSLLVMPNKIQVKVTAVMCDESKVKSAGPGENLRVRISGIEEEDITSGFVLSSIAKPIPCVSEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIIELLQQIDPKTRKPMKKKVLFVKNGAVILCRVQVNNLICIEKFSDVPQLGRFTLRTEGKTVAVGKVTDIPYASN 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1799171 1814070 - Lsi02G002190.1 Lsi02g00219 654961

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00219 537 Gene3D Translation factors 335 419 - -
Lsi02g00219 537 SUPERFAMILY Translation proteins 330 422 IPR009000 -
Lsi02g00219 537 Pfam Elongation factor Tu C-terminal domain 425 532 IPR004160 -
Lsi02g00219 537 PRINTS GTP-binding elongation factor signature 96 109 IPR000795 GO:0003924|GO:0005525
Lsi02g00219 537 PRINTS GTP-binding elongation factor signature 191 202 IPR000795 GO:0003924|GO:0005525
Lsi02g00219 537 PRINTS GTP-binding elongation factor signature 175 185 IPR000795 GO:0003924|GO:0005525
Lsi02g00219 537 Pfam Elongation factor Tu GTP binding domain 92 202 IPR000795 GO:0003924|GO:0005525
Lsi02g00219 537 Pfam Elongation factor Tu GTP binding domain 213 311 IPR000795 GO:0003924|GO:0005525
Lsi02g00219 537 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 92 335 IPR000795 GO:0003924|GO:0005525
Lsi02g00219 537 Coils Coil 119 139 - -
Lsi02g00219 537 Gene3D - 67 329 IPR027417 -
Lsi02g00219 537 CDD EF1_alpha 96 331 - -
Lsi02g00219 537 CDD eRF3_C_III 424 532 - -
Lsi02g00219 537 Pfam Elongation factor Tu domain 2 350 416 IPR004161 GO:0005525
Lsi02g00219 537 Coils Coil 62 82 - -
Lsi02g00219 537 PANTHER BNAA06G12300D PROTEIN 46 528 - -
Lsi02g00219 537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 87 341 IPR027417 -
Lsi02g00219 537 PANTHER TRANSLATION FACTOR 46 528 - -
Lsi02g00219 537 Gene3D Translation factors 425 533 - -
Lsi02g00219 537 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 148 163 IPR031157 -
Lsi02g00219 537 CDD eRF3_II 337 418 - -
Lsi02g00219 537 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 427 532 IPR009001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00219 K03267 ERF3, GSPT; peptide chain release factor subunit 3 - csv:101217809 887.486
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00219 Lsi-Chr2:1799171 Lsi02g01702 Lsi-Chr2:22783343 6.49E-89 dispersed
Lsi02g00219 Lsi-Chr2:1799171 Lsi10g01288 Lsi-Chr10:17113450 1.39E-87 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g246 Blo04g00839 Blo16g00126 . . . Bpe13g00367 Bma06g00055 . Cmo13g01039 Cmo18g00045 . . . . . Cpe20g00140 . . . . . . . . . . . . . . . . . . . Lsi02g00219 Csa01g00700 Chy12g01412 Cme12g01846 . . Bda11g01780 . . Bpe15g00536 Bma03g00904 . Sed08g2749 . . Cma13g01003 Cma18g00058 Car13g00838 Car18g00051 Cpe09g01124 Cpe18g00872 Bhi08g01272 Tan05g2214 Cmetu12g0241 Lac10g0273 . . . Cla04g01062 Cam04g1105 Cec01g1619 Cco01g1666 Clacu04g1130 Cmu04g1114 Cre01g1415 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004032 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00219 Lsi_Chr02 FPKM 10.85926 12.796799 6.190159 6.527989 4.124688 4.275143 5.556015 3.64883 3.590071 4.301546