Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00223 ATGGCTGCCTCTGTTGATCCTTTGGTGGTGGGACGGGTGATCGGTGACGTTGTCGACATGTTTGTCCCGACCGCCACCATGTCGGTCTACTTCAACTCCAAGCATGTAACTAATGGCTGTGACATTAAGCCTTCTCTTGCTGTTAACCCTCCTAGGCTCGTCATTTCTGGTCATCCTTGCGATCTTTACACTCTGGTGATGACAGACCCAGATGCGCCGAGTCCCAGTGAACCCCATATGAGAGAATGGGTGCAGTGGATAATTGTAGACATTCCTGGAGGTGCAAATCTGAGCCAAGGAAAGGAGATTGTGCCGTACTCGGGTCCCCGACCGCCGATTGGAATTCACCGTTACATCCTATTGTTGTTCAAGCAAAAGGGGCCTATTGGAATGATTGATCAGCCAGCAAGCCGTGCCAATTTCAACACTCGCCTGTTTGCAAGGCATTTCAATCTCGACCTGCCAGTCGCTGCTACCTATTTCAACTCTCAGAAGGAGCCTGCTACCAAAAAATACGCTCTTGCAGCCTAA 531 50.28 MAASVDPLVVGRVIGDVVDMFVPTATMSVYFNSKHVTNGCDIKPSLAVNPPRLVISGHPCDLYTLVMTDPDAPSPSEPHMREWVQWIIVDIPGGANLSQGKEIVPYSGPRPPIGIHRYILLLFKQKGPIGMIDQPASRANFNTRLFARHFNLDLPVAATYFNSQKEPATKKYALAA 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1864174 1866009 - Lsi02G002230.1 Lsi02g00223 654965

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00223 176 PANTHER BNAA06G12320D PROTEIN 1 171 - -
Lsi02g00223 176 Gene3D - 1 172 IPR036610 -
Lsi02g00223 176 Pfam Phosphatidylethanolamine-binding protein 48 160 IPR008914 -
Lsi02g00223 176 PANTHER PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN 1 171 IPR035810 -
Lsi02g00223 176 SUPERFAMILY PEBP-like 12 165 IPR036610 -
Lsi02g00223 176 CDD PEBP_euk 25 163 IPR035810 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00223 - - - csv:101203454 361.303
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00223 Lsi-Chr2:1864174 Lsi06g00666 Lsi-Chr6:10189472 6.51E-58 dispersed
Lsi02g00223 Lsi-Chr2:1864174 Lsi01g01227 Lsi-Chr1:10467215 1.50E-53 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g228 Blo04g00843 . . . . . . . . Cmo18g00048 . . . . . . . . . . . . . . . . . . . . . Cone2ag0756 . . . Lsi02g00223 . . . . . . . . Bpe15g00518 Bma03g00909 . Sed01g1758 . . . Cma18g00062 . Car18g00054 Cpe09g01122 . Bhi08g01279 Tan05g2206 Cmetu04g3049 Lac10g0278 Hepe07g2363 . . Cla04g01058 Cam04g1100 Cec01g1615 Cco01g1660 Clacu04g1125 Cmu04g1109 Cre01g1409 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002658 1 2 1 2 1 2 3 2 1 1 2 2 2 1 2 3 2 2 2 2 2 2 2 3 2 2 2 2 2 1 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00223 Lsi_Chr02 FPKM 22.547892 25.235851 45.261166 48.141052 17.784216 15.51571 20.088444 20.433647 23.380636 22.698248