Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00224 ATGTCCGGTGATAAGCAATCAGGATTTTTCACAGAGTATGGAGAAGCAAGCCGATACCAAATTCAAGAAGTTATTGGGAAAGGAAGCTACGGAGTTGTTGGTTCTGCAATTGACACCCAGACTGGTGAAAGATTTGCCATCAAGAAAATTAATGATGTGTTTGAGCATGTATCTGATGCCATACGCATTCTCAGAGAAATTAAGCTTCTTCGGATGCTTCATCATCCGAATATTGTAGAGATAAAACATATTATGCTTCCTCCCTCAGAACGAGAATTCAAAGATATATATCTTGTTTTTGAGTTGATGAAGTCTGATCTTCACCATGTAATTAAGGCAAATAATGATCTTTCTCCAAAGCAGCATAAATTTTTTCTGTTCCAGCTTCTTAGTGGCCTAAAATATATTCATGCAGCAAATGTCCTTCATCGCGATTTGAAGCCAAAGAACATACTTGCTAATGCTGACTGCAGACTGAAGATATGTGATTTTGGACTTGCTCGTGTATCTTTTAGCGATGCGCCATCTACTATTTTTTGGACAGATTATGTTGCAACTCGATGGTATCGTGCTCCCGAACTCTGTGGATCATTTTTCTCGAGATATACCCCTGCTATAGATATATGGAGTATCGGATGCATATTTGCAGAAATGCTTACGGGGAAACCTTTGTTTCCTGGAAAAAATGTGGTTCACCAATTAGATCTAATTACCGATCTGTTTGGCACTCCTGAACCTGAGGCCATAGCGAAGATTCGGAATGAGAAGGCAAGAAGGTACCTTGGAAACATGCGTAAAAAACCACCAGTTCCATTCTCACGAAAGTTTCCTAATTCTGACCCATTGGCACTTTCTTTACTGGAACGTCTCCTGGCATTTGATCCCAAATGTCGTCTAACAGCTGCAGAGGCACTTGCTGATCCTTACTTCAACGGTATGGCGAAACCAGAACTTGAACCTTCTATTCAACCAATTTCAAAACTTGAGTTCGAGTTTGAGAGGAGGAGGTTATCAAAAGATGATGTTAGAGAGTTGATTTATGCAGAGATTTTAGAGTATCATCCCCAGATGCATCAGGAGTGTCTACGTGATGGAGATCATCCAACTACCTTTATGTATCCTAGCTCAATTAATTTCAGAATGGGCCAATGTCATAGATCAATAATCCATTTCTTCCTCTTGCTTATGCTCAGTGGCGTTGATCGATTTAAGCTTCAGTTTGCACATCTGGAAGAGCACCGTGGTAAAGGTGAAAGAATAAGTCGACTTCAAAGGCAGAACATTTCTTTACCTCGGGTGCGGGTTAGTCCTACTGAGCAGAACAACACTGAGAATAACATTGACTCTGAAAGGGGGAAAGATAAGAGTTCTCATCTCTTGAAAAGTGCTAGTATTAGTGCATCGAGGTGTGTTGGGGTCATACCAAAGGAGAAGTCTGAGGCGGAAGAAACGAGTTCTGAAGTGAAAAATGAAGCATCCTTCAGACTTAAGTTCATGTTGATATATTTAGGTACTGAAGACAGGAGGCAGAAGGTTTTGATCTGGTCACATTTCCCTGAGAAACAGCTAACTGGTTTTGAAGAGTTAAAAAATTTGATGACAATGAAGAGCCTCAGCCAGCAGTGTGGGATGATGCTATTGCTTGTCATATTCATAAGCATCCTCCTTGCTGGTTTTGTGCCATTCAGCTTTGCTTCTCCTGTCACTCGACGCTTTCGGTTTAATGTGGAGTGGAAGAGGGTGACAAGATTGTGCCATACAAAGCAACTTCTAACTGTGAATGGACAGTATCCAGGGCCAACCATTGCAGTCCATGAAGGTGATACAGTTGAAATCAAGAATATAATCTCTAGTATTGAACAAGAGCATTCTTTGCCTTTCAACATTACAGGTTTAGAAACTTTGAGCTTGCATGGGGTGAAGCAATTAAGAACAGGATGGGCAGATGGTCCAGCTTATATAACACAGTGCCCTATCAGAACAGGAGAATCATACACATATAAATTCTCAGTGATTAACCAAAGAGGGACATTGTGGTGGCACGCACATTACTCATGGCAACGTGCTTCTGTGCATGGTGAATGGTGGAATGGAGATGTGGAAGAAGTTGAAAATGAGATGTTGAAATCTGGAGGTGGACCTAACAATTCTGATGCCTATACCATTAATGGCTTGCCAGGACCTCTCTATCCTTGCTCTAGCAAAGTAAACATAATTTTCTATCATCACAATGTTCAATGCCCAGATACATTCATTTCAACAGTAGAATGGGGGAAAACTTACCTGCTGAGAGTAATTAATGGAGCACTCAACAATGAACTTTTCTTTGCCATAGCCAACCATACATTGACACTGGTGGAGATTGATGCTGCATACACAAAACCCTTCAATACCACAGCCATTATGATAGCTCCTGGCCAAACCACCACTCTTCTGCTCAATACAGATCAAATTCAAATTCCAGATCACTCCTCTGGAATCCTCTTCCCAATGGCAATCACACCTTATGTAACTTCAATTTTCCCCTTCAATAACTCCACCTCCATTGGCTTCTTAAGATACAAAAGCAGGAAAATAAATAAACTTAGCTCACAAACAAATTTCCCATCTAATCCAATACCTGAAAACCTCCCTGATATGAAGGATACAGCCTTTGCCACTGCATTTTCAAACAAACTCCATAGCCTTGATTCTCCTCTGTATCCATGTAATGTTCCTAAAACAGTTCAGAAAAGAGTGTTCATTACCATAAGCCTCAATCTCCAGAACTGCCCATCTGGGAAAACCTGCGAGGGTTTGAATGGAAAGAGCTTTTTTGCTTCTATGAACAATCAATCCTTCATTCGACCTGATTTGTCCATATTGGAATCTCATTATAGAAAGATTGCTACCAATTCGTACTCCACCGATTTTCCAGAAAGACCCATTAGGGTTTTTGATTACACTGGCGTAAACCCATTAACGAAGAACATGAACACGGAATTTGGGACTAAGCTTTTGGCGGTTCCATATGGAACAGATCTGGAAATCGTGTTTCAGGGCACGAATTTTCTGAATGTGGAGAATCATCCGATTCATGTTCATGGGCACAATTTCTTCGTTGTGGGCAGGGGATTTGGGAATTTCGACGCGGGTAGAGATCCGGCGAAGTACAATCTGGTGGATCCGCCGGAAAGAAACACGGTGGCGGTGCCGACGGGAGGGTGGGCGGCGATCAGAATTAGGGCGGATAATCCTGGAGTTTGGTTTATACATTGTCATCTTGAAGAACATACTTCTTGGGGACTTGCAATGGGACTCATAGTAACTCTTTGCATGAAAATGCCAGCAAAAGACAAAATCTGTGGACCTTTCATATGA 3360 41.46 MSGDKQSGFFTEYGEASRYQIQEVIGKGSYGVVGSAIDTQTGERFAIKKINDVFEHVSDAIRILREIKLLRMLHHPNIVEIKHIMLPPSEREFKDIYLVFELMKSDLHHVIKANNDLSPKQHKFFLFQLLSGLKYIHAANVLHRDLKPKNILANADCRLKICDFGLARVSFSDAPSTIFWTDYVATRWYRAPELCGSFFSRYTPAIDIWSIGCIFAEMLTGKPLFPGKNVVHQLDLITDLFGTPEPEAIAKIRNEKARRYLGNMRKKPPVPFSRKFPNSDPLALSLLERLLAFDPKCRLTAAEALADPYFNGMAKPELEPSIQPISKLEFEFERRRLSKDDVRELIYAEILEYHPQMHQECLRDGDHPTTFMYPSSINFRMGQCHRSIIHFFLLLMLSGVDRFKLQFAHLEEHRGKGERISRLQRQNISLPRVRVSPTEQNNTENNIDSERGKDKSSHLLKSASISASRCVGVIPKEKSEAEETSSEVKNEASFRLKFMLIYLGTEDRRQKVLIWSHFPEKQLTGFEELKNLMTMKSLSQQCGMMLLLVIFISILLAGFVPFSFASPVTRRFRFNVEWKRVTRLCHTKQLLTVNGQYPGPTIAVHEGDTVEIKNIISSIEQEHSLPFNITGLETLSLHGVKQLRTGWADGPAYITQCPIRTGESYTYKFSVINQRGTLWWHAHYSWQRASVHGEWWNGDVEEVENEMLKSGGGPNNSDAYTINGLPGPLYPCSSKVNIIFYHHNVQCPDTFISTVEWGKTYLLRVINGALNNELFFAIANHTLTLVEIDAAYTKPFNTTAIMIAPGQTTTLLLNTDQIQIPDHSSGILFPMAITPYVTSIFPFNNSTSIGFLRYKSRKINKLSSQTNFPSNPIPENLPDMKDTAFATAFSNKLHSLDSPLYPCNVPKTVQKRVFITISLNLQNCPSGKTCEGLNGKSFFASMNNQSFIRPDLSILESHYRKIATNSYSTDFPERPIRVFDYTGVNPLTKNMNTEFGTKLLAVPYGTDLEIVFQGTNFLNVENHPIHVHGHNFFVVGRGFGNFDAGRDPAKYNLVDPPERNTVAVPTGGWAAIRIRADNPGVWFIHCHLEEHTSWGLAMGLIVTLCMKMPAKDKICGPFI 1119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1876829 1889589 - Lsi02G002240.1 Lsi02g00224 654966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00224 1119 CDD CuRO_3_LCC_plant 967 1102 IPR034289 GO:0005507
Lsi02g00224 1119 ProSitePatterns Multicopper oxidases signature 1. 1080 1100 IPR033138 -
Lsi02g00224 1119 ProSiteProfiles Protein kinase domain profile. 19 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00224 1119 CDD STKc_TDY_MAPK 18 355 - -
Lsi02g00224 1119 ProSitePatterns Protein kinases ATP-binding region signature. 25 49 IPR017441 GO:0005524
Lsi02g00224 1119 MobiDBLite consensus disorder prediction 431 456 - -
Lsi02g00224 1119 CDD CuRO_1_LCC_plant 574 695 IPR034288 GO:0005507
Lsi02g00224 1119 ProSitePatterns Multicopper oxidases signature 2. 1085 1096 IPR002355 GO:0005507
Lsi02g00224 1119 SUPERFAMILY Protein kinase-like (PK-like) 15 317 IPR011009 -
Lsi02g00224 1119 Pfam Protein kinase domain 19 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00224 1119 Pfam Multicopper oxidase 975 1102 IPR011706 GO:0005507|GO:0016491
Lsi02g00224 1119 CDD CuRO_2_LCC_plant 693 854 IPR034285 -
Lsi02g00224 1119 Gene3D Transferase(Phosphotransferase) domain 1 105 333 - -
Lsi02g00224 1119 Pfam Multicopper oxidase 576 690 IPR011707 GO:0005507
Lsi02g00224 1119 Gene3D - 691 898 IPR008972 -
Lsi02g00224 1119 ProSitePatterns MAP kinase signature. 54 157 IPR003527 GO:0004707|GO:0005524|GO:0006468
Lsi02g00224 1119 MobiDBLite consensus disorder prediction 431 445 - -
Lsi02g00224 1119 SUPERFAMILY Cupredoxins 899 1103 IPR008972 -
Lsi02g00224 1119 Gene3D - 562 690 IPR008972 -
Lsi02g00224 1119 SUPERFAMILY Cupredoxins 555 688 IPR008972 -
Lsi02g00224 1119 SUPERFAMILY Cupredoxins 693 895 IPR008972 -
Lsi02g00224 1119 Gene3D - 928 1118 IPR008972 -
Lsi02g00224 1119 Pfam Multicopper oxidase 693 819 IPR001117 -
Lsi02g00224 1119 SMART serkin_6 19 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00224 1119 Gene3D Phosphorylase Kinase; domain 1 35 356 - -
Lsi02g00224 1119 PANTHER LACCASE-1 692 1102 - -
Lsi02g00224 1119 PANTHER LACCASE-1 546 693 - -
Lsi02g00224 1119 PANTHER MULTI-COPPER OXIDASE 692 1102 IPR045087 -
Lsi02g00224 1119 PANTHER MULTI-COPPER OXIDASE 546 693 IPR045087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi02g00224 Lsi06g01294 CCT
Lsi02g00224 Lsi06g01294 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00224 Lsi-Chr2:1876829 Lsi09g01365 Lsi-Chr9:21696552 0 dispersed
Lsi06g00225 Lsi-Chr6:2593680 Lsi02g00224 Lsi-Chr2:1876829 4.77E-08 transposed
Lsi02g00224 Lsi-Chr2:1876829 Lsi06g01294 Lsi-Chr6:23491733 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83341 PF00069 Pkinase 6.80E-67 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00224 K05909 - csv:101208781 964.526