Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00226 ATGAAGAACCTCCTCAAGAAGTTCCACATCATGTCCAGTGGTCAGTCTGACGATGCAGCTGAAGGGTCTACTTCATCGAGGAGCAGTAAATTAATGGAGGTTTCATCATCTGATAAGCTGCCATCTCGCTCCCGGCCGACCCATTTCAATTCGGAGCATAAACCCTTCTCGGGGTTATCCGGTTGGTTGAACTCTGTTACAAATAGGCGTAGCCCCAGTCCTCCATCGTCTTCCAATCCTACTGCAGGCGAGTTAATGGAGCCATCAGATTCAGTATCTAGCAGAGATGCTGCGATGGATACATCTAGGCATGATTCAGGGTCGAGTAACTCGAGGGATCCTGATATAGAGGAAGAGTATCAGATACAGCTTGCTTTGGAAATGAGTGCCAGGGAAGATCCTGAGGCAGCTCAGATTGAGGCTGTGAAGCAGATCAGTTTGGGGTCATGTGATCCTGATAACACTCCAGCTGAAGTTATTGCCTTCAGATACTGGAATTACAATTCTCTTAGCTATGATGACAAGATCTTGGATGGCTTTTATGACCTTTATGGAGTCTTCACCGAGTCCACCTCTGAAAGAATGCCTTCCCTAGTTGATCTGCAAGGAGCACCAATGTCTGACAGTGTCATGTGGGAAGCAGTTCTGATTAATAAAGCTGCTGATGCTAACTTATTGAAACTTGAACAGACAGCATTGGAGATGGCTATCAAGATGGGGTCGGAATCCCCAATTTCTATAAATAGTTATTTGGTGCGGAAGCTTGCTGTTTTAGTTTCAGATCATATGGGGGGACCAGTAGGTGATCCTGAAAAGATATTGAGAAAATGGAGAAATCTTAGTTACAGCTTGAAAGCAACCCTTGGCAGTATGGTTTTGCCTCTTGGCTCCCTTACTGTAGGGTTGGCCCGTCATCGTGCATTGTTATTCAAGCTTTTGGCAGATGGCGTGGGTATTCCTTGTAGGTTGGTGAAAGGACCACAGTACACTGGTTCTGATGATGTGGCGATGAACTTCGTAAAGATTGATGATGGAAGGGAGTACATTGTGGATTTAATGGCAGATCCTGGTGCACTTATTCCAGCTGATGTTGCTGGATCGCATGTAGAGTATGATGGATCCCCTTTTTCAGCCAGTCCACTTTCTAGAGATGTTGATTCCTCTCAGGCAGCATCTTCAAGCAGTGGGGTTGGCAGTTCATTAGAGGGAAATTCAGATTTTGGGATATCAGATAGGAAACCAAGGTCCCGGAATCTCAGTGCCACAAAGGAATATGATTCTCCCAGTGTCGACAAGGGGCCATCACGTGATTTTGCTAGCAAATCAAATTACCCTGGCATGCACGTTAGATCACCTTCTTGGACTGAGGGTGTTAGTTCACCTGCAGTCCGCAGAATGAAAGTAAAGGATGTTTCACAATACATGATTGATGCCGCCAAAGAGAATCCACGGTTGGCTCAGAAGCTTCATGATGTGTTGCTTGAAAGTGGTGTAGTTGCTCCTCCTAACTTGTTTACCGAGGCATACCCTGACCAAATAGATGTTATTGTTGAGTCTAAGTCACCAACTGAAGACAAGGATCAAAGTAGAAAGGTGCCTGGTCTCTGTGAAAGTGTAGATAAGAATGATCCTCGTCCAGCTAACTTTTTGCCTCCCTTGCCTCAGCCCAGACTGCATCCTAGAGCCAGCCCTACCCATGGCCAACAACAGCACCTTAAACCTCTGGAATTCAACCTTTCTCTTGATTCAAGAGAAGTAGCCGGACAACCTATAGCCTTACCATTCGAGGTAACTCCAGTGAAGTATGGGAGAAAGGTACCTGTTGCCGCAGCAGCAGCAGCTGCCGCAGCTGTTGTTGCATCATCAATGGTGGTAGCTGCAGCAAAGAGTACTGATGCAAATCTTGAAATTCCTGTAGCAGCTGCTGCCACCGCCACCGCTGCTGCAGTGGTTGCAACAACTGCAGCAGTCAACAAGCAATATGAGCAGGTTGAGGCCGATGCTGCTCTTTATGAGCAGCGTGGAAGTGGAGATAGGGAGCATGATGCTTGTGGAGAAAATTCAGAGGGTGAACGAATATCAGATAGATCGGTTGGTAACGAAAGCACAAAATCCGATATGACCCTTGATGACGTTGCAGAATGCGAGATCCCATGGGAAGAAATTTCCTTGGGAGAGCGTATTGGACTTGGATCATATGGGGAGGTCTATCGTGGAGATTGGCATGGAACTGAGGTAGCTGTGAAGAGGTTTCTAGACCAGGACATTTCTGGCGAATCTCTTGAAGAATTTAAAAGTGAGGTTCGAATTATGAAAAGGCTTCGGCATCCGAATGTTGTTCTCTTCATGGGAGCTGCTGAGTGGATGGCTCCAGAAGTGCTGAGGAATGAACCTTCAGATGAAAAGTGCGACGTTTATAGTTATGGAGTCATACTATGGGAGCTGTCTACAATGCAACAACCATGGGGAGGAATGAACCCAATGCAAGTTGTTGGGGCTGTTGGCTTTCAGCATCGCCGTCTTGACATCCCAGACAATTTGGATCCTGCCATTGCCGACATTATTAGGAAATGCTGGCAAACAGATCCAAGATTAAGACCTTCATTTGCGGAGATTATGGCTGCGCTAAAGCCGCTGCAGAAGCCAATGTCGAGTTCTCAAGTACCGAGACCAAATGCTCCTGCAGGTAGTAGTCGTGACAAGGCTCGATTATTGCAAGCTGTCGAAGACCCATCAGGCTAG 2742 46.64 MKNLLKKFHIMSSGQSDDAAEGSTSSRSSKLMEVSSSDKLPSRSRPTHFNSEHKPFSGLSGWLNSVTNRRSPSPPSSSNPTAGELMEPSDSVSSRDAAMDTSRHDSGSSNSRDPDIEEEYQIQLALEMSAREDPEAAQIEAVKQISLGSCDPDNTPAEVIAFRYWNYNSLSYDDKILDGFYDLYGVFTESTSERMPSLVDLQGAPMSDSVMWEAVLINKAADANLLKLEQTALEMAIKMGSESPISINSYLVRKLAVLVSDHMGGPVGDPEKILRKWRNLSYSLKATLGSMVLPLGSLTVGLARHRALLFKLLADGVGIPCRLVKGPQYTGSDDVAMNFVKIDDGREYIVDLMADPGALIPADVAGSHVEYDGSPFSASPLSRDVDSSQAASSSSGVGSSLEGNSDFGISDRKPRSRNLSATKEYDSPSVDKGPSRDFASKSNYPGMHVRSPSWTEGVSSPAVRRMKVKDVSQYMIDAAKENPRLAQKLHDVLLESGVVAPPNLFTEAYPDQIDVIVESKSPTEDKDQSRKVPGLCESVDKNDPRPANFLPPLPQPRLHPRASPTHGQQQHLKPLEFNLSLDSREVAGQPIALPFEVTPVKYGRKVPVAAAAAAAAAVVASSMVVAAAKSTDANLEIPVAAAATATAAAVVATTAAVNKQYEQVEADAALYEQRGSGDREHDACGENSEGERISDRSVGNESTKSDMTLDDVAECEIPWEEISLGERIGLGSYGEVYRGDWHGTEVAVKRFLDQDISGESLEEFKSEVRIMKRLRHPNVVLFMGAAEWMAPEVLRNEPSDEKCDVYSYGVILWELSTMQQPWGGMNPMQVVGAVGFQHRRLDIPDNLDPAIADIIRKCWQTDPRLRPSFAEIMAALKPLQKPMSSSQVPRPNAPAGSSRDKARLLQAVEDPSG 913
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1899950 1915214 + Lsi02G002260.1 Lsi02g00226 654968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00226 913 Pfam Protein tyrosine and serine/threonine kinase 723 786 IPR001245 GO:0004672|GO:0006468
Lsi02g00226 913 Pfam Protein tyrosine and serine/threonine kinase 787 876 IPR001245 GO:0004672|GO:0006468
Lsi02g00226 913 MobiDBLite consensus disorder prediction 1 116 - -
Lsi02g00226 913 MobiDBLite consensus disorder prediction 16 44 - -
Lsi02g00226 913 Gene3D Phosphorylase Kinase; domain 1 698 787 - -
Lsi02g00226 913 MobiDBLite consensus disorder prediction 673 707 - -
Lsi02g00226 913 ProSiteProfiles Protein kinase domain profile. 722 913 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00226 913 MobiDBLite consensus disorder prediction 520 538 - -
Lsi02g00226 913 MobiDBLite consensus disorder prediction 380 406 - -
Lsi02g00226 913 SUPERFAMILY Protein kinase-like (PK-like) 709 883 IPR011009 -
Lsi02g00226 913 MobiDBLite consensus disorder prediction 51 88 - -
Lsi02g00226 913 MobiDBLite consensus disorder prediction 880 913 - -
Lsi02g00226 913 MobiDBLite consensus disorder prediction 97 116 - -
Lsi02g00226 913 ProSitePatterns Protein kinases ATP-binding region signature. 728 749 IPR017441 GO:0005524
Lsi02g00226 913 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 785 - -
Lsi02g00226 913 Gene3D Transferase(Phosphotransferase) domain 1 788 882 - -
Lsi02g00226 913 MobiDBLite consensus disorder prediction 520 570 - -
Lsi02g00226 913 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 784 911 - -
Lsi02g00226 913 Pfam Ethylene-responsive protein kinase Le-CTR1 157 360 - -
Lsi02g00226 913 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 784 911 - -
Lsi02g00226 913 MobiDBLite consensus disorder prediction 673 699 - -
Lsi02g00226 913 MobiDBLite consensus disorder prediction 378 460 - -
Lsi02g00226 913 Coils Coil 654 674 - -
Lsi02g00226 913 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 1 785 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00226 Lsi-Chr2:1899950 Lsi04g01431 Lsi-Chr4:22044056 1.12E-56 dispersed
Lsi02g00226 Lsi-Chr2:1899950 Lsi01g01250 Lsi-Chr1:10677564 1.58E-21 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83342 PF14381 EDR1 4.40E-74 CL0125 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00226 - - csv:101209024 1400.57