Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00230 ATGTGGATGATGGGTTACAATGACGCTGCAGATTTGAACTTCCCTTCCGATAACTCTTTCAATTCTCGCAAACTTAGACCTCTCATTCCTCGCCCTCTCTCTTCTTCTTCTTCCTCTTCCTCCATTAATAATCTCATCCCCACCAACGATTTCTTCTCCCAATTTCATCACATGGCGACGGTTACGGATCAAAGTAAGAGAGAGTTGAATAATGTGTCGTTGTCACCGCCTGTGGTGGTCAGTTCACGGTGGAATCCGACGCCTGAGCAGTTGAGAGTGTTGGAGGAATTGTATCGGCGAGGGACTCGAACTCCGTCCGCCGATCAAATTCAACATATCACTGCTCAGCTTCGTCGTTATGGTAAGATTGAAGGTAAGAATGTGTTCTATTGGTTTCAAAATCATAAAGCTAGAGAGCGACAGAAACGTCGTCGTCAGATGGAATCCGCCATCACTGCTGCCGACGACCACTCCACTCGCGACGGCGAAATCCTTGAAAGGAAAGATTCAGGGTCGGGCAGCACAGTGTATGAAGAACAGACCAAAAACTGGGTGCCCTCTACAAACTGCAGTACACTTCCGGAGGAATCTGTTCCAATTCAAAGGGCGGCAAAAGGTAGTGTAATAGGAGGAGCAGATTGCAGGACAGAAAATGGATGGATTCAATTTGAGGAATTGCACCAAATAAGGAATAACAACACCACCAACAACAACAATTTTGCTGAAAAGAATAGCAATAACATCAACAACAATATTAAAAATTCAGCCTCCTTGCCATTGATTCATTGTCCGACAGCCGCTCTCCGTGACGGCAGCGGCAGCCAACTAATGATGAACATTGCCCCCATCACCACCACAGCCACAGTAACAACAATAATGCACCCAAAATCTCATAGAAGAACTAATATTTCAGGTAATTTTAATATAATTGGACCCTATACTCAAAATGGGGTTGAAGAATTGGAAGAAATAGAAGAAGAATTAGAAGGAGAAGAAAGGTGTGGGGAATCTGAAACCCTACAACTTTTTCCATTGTGCAGTGACACAAGAAATGGTGAGATTATTGGAGGCAAAAATGGGTGTGAAACAGACGTGGAAAATTCAGCCATGAATAGTACTAATCTGACTCCACTTCAGTTCTTTGAATTCCTTCCATTGAAGAATTGA 1167 43.62 MWMMGYNDAADLNFPSDNSFNSRKLRPLIPRPLSSSSSSSSINNLIPTNDFFSQFHHMATVTDQSKRELNNVSLSPPVVVSSRWNPTPEQLRVLEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKRRRQMESAITAADDHSTRDGEILERKDSGSGSTVYEEQTKNWVPSTNCSTLPEESVPIQRAAKGSVIGGADCRTENGWIQFEELHQIRNNNTTNNNNFAEKNSNNINNNIKNSASLPLIHCPTAALRDGSGSQLMMNIAPITTTATVTTIMHPKSHRRTNISGNFNIIGPYTQNGVEELEEIEEELEGEERCGESETLQLFPLCSDTRNGEIIGGKNGCETDVENSAMNSTNLTPLQFFEFLPLKN 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1934707 1937954 - Lsi02G002300.1 Lsi02g00230 654972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00230 388 MobiDBLite consensus disorder prediction 143 168 - -
Lsi02g00230 388 SUPERFAMILY Homeodomain-like 82 148 IPR009057 -
Lsi02g00230 388 Gene3D - 81 148 - -
Lsi02g00230 388 CDD homeodomain 83 143 IPR001356 GO:0003677
Lsi02g00230 388 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 39 388 IPR044555 GO:0003700|GO:0099402
Lsi02g00230 388 Coils Coil 231 251 - -
Lsi02g00230 388 MobiDBLite consensus disorder prediction 141 179 - -
Lsi02g00230 388 Pfam Homeodomain 82 141 IPR001356 GO:0003677
Lsi02g00230 388 SMART HOX_1 79 146 IPR001356 GO:0003677
Lsi02g00230 388 ProSiteProfiles 'Homeobox' domain profile. 87 142 IPR001356 GO:0003677
Lsi02g00230 388 Coils Coil 318 338 - -
Lsi02g00230 388 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 39 388 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi02g00230 Lsi06g01287 CCT
Lsi02g00230 Lsi06g01287 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00606 Lsi-Chr1:4880194 Lsi02g00230 Lsi-Chr2:1934707 6.92E-27 dispersed
Lsi02g00230 Lsi-Chr2:1934707 Lsi10g01325 Lsi-Chr10:17468044 1.40E-28 dispersed
Lsi01g00272 Lsi-Chr1:2431624 Lsi02g00230 Lsi-Chr2:1934707 1.59E-16 transposed
Lsi02g01365 Lsi-Chr2:18450158 Lsi02g00230 Lsi-Chr2:1934707 7.19E-30 transposed
Lsi03g01692 Lsi-Chr3:28214776 Lsi02g00230 Lsi-Chr2:1934707 4.62E-16 transposed
Lsi04g01814 Lsi-Chr4:25353981 Lsi02g00230 Lsi-Chr2:1934707 3.78E-14 transposed
Lsi07g01059 Lsi-Chr7:15961952 Lsi02g00230 Lsi-Chr2:1934707 1.03E-13 transposed
Lsi02g00230 Lsi-Chr2:1934707 Lsi06g01287 Lsi-Chr6:23429509 1.02E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24744 PF00046 Homeodomain 1.60E-19 CL0123 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00230 - - csv:101209268 508.449