Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi02g00230 | ATGTGGATGATGGGTTACAATGACGCTGCAGATTTGAACTTCCCTTCCGATAACTCTTTCAATTCTCGCAAACTTAGACCTCTCATTCCTCGCCCTCTCTCTTCTTCTTCTTCCTCTTCCTCCATTAATAATCTCATCCCCACCAACGATTTCTTCTCCCAATTTCATCACATGGCGACGGTTACGGATCAAAGTAAGAGAGAGTTGAATAATGTGTCGTTGTCACCGCCTGTGGTGGTCAGTTCACGGTGGAATCCGACGCCTGAGCAGTTGAGAGTGTTGGAGGAATTGTATCGGCGAGGGACTCGAACTCCGTCCGCCGATCAAATTCAACATATCACTGCTCAGCTTCGTCGTTATGGTAAGATTGAAGGTAAGAATGTGTTCTATTGGTTTCAAAATCATAAAGCTAGAGAGCGACAGAAACGTCGTCGTCAGATGGAATCCGCCATCACTGCTGCCGACGACCACTCCACTCGCGACGGCGAAATCCTTGAAAGGAAAGATTCAGGGTCGGGCAGCACAGTGTATGAAGAACAGACCAAAAACTGGGTGCCCTCTACAAACTGCAGTACACTTCCGGAGGAATCTGTTCCAATTCAAAGGGCGGCAAAAGGTAGTGTAATAGGAGGAGCAGATTGCAGGACAGAAAATGGATGGATTCAATTTGAGGAATTGCACCAAATAAGGAATAACAACACCACCAACAACAACAATTTTGCTGAAAAGAATAGCAATAACATCAACAACAATATTAAAAATTCAGCCTCCTTGCCATTGATTCATTGTCCGACAGCCGCTCTCCGTGACGGCAGCGGCAGCCAACTAATGATGAACATTGCCCCCATCACCACCACAGCCACAGTAACAACAATAATGCACCCAAAATCTCATAGAAGAACTAATATTTCAGGTAATTTTAATATAATTGGACCCTATACTCAAAATGGGGTTGAAGAATTGGAAGAAATAGAAGAAGAATTAGAAGGAGAAGAAAGGTGTGGGGAATCTGAAACCCTACAACTTTTTCCATTGTGCAGTGACACAAGAAATGGTGAGATTATTGGAGGCAAAAATGGGTGTGAAACAGACGTGGAAAATTCAGCCATGAATAGTACTAATCTGACTCCACTTCAGTTCTTTGAATTCCTTCCATTGAAGAATTGA | 1167 | 43.62 | MWMMGYNDAADLNFPSDNSFNSRKLRPLIPRPLSSSSSSSSINNLIPTNDFFSQFHHMATVTDQSKRELNNVSLSPPVVVSSRWNPTPEQLRVLEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKRRRQMESAITAADDHSTRDGEILERKDSGSGSTVYEEQTKNWVPSTNCSTLPEESVPIQRAAKGSVIGGADCRTENGWIQFEELHQIRNNNTTNNNNFAEKNSNNINNNIKNSASLPLIHCPTAALRDGSGSQLMMNIAPITTTATVTTIMHPKSHRRTNISGNFNIIGPYTQNGVEELEEIEEELEGEERCGESETLQLFPLCSDTRNGEIIGGKNGCETDVENSAMNSTNLTPLQFFEFLPLKN | 388 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 1934707 | 1937954 | - | Lsi02G002300.1 | Lsi02g00230 | 654972 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi02g00230 | 388 | MobiDBLite | consensus disorder prediction | 143 | 168 | - | - | |
Lsi02g00230 | 388 | SUPERFAMILY | Homeodomain-like | 82 | 148 | IPR009057 | - | |
Lsi02g00230 | 388 | Gene3D | - | 81 | 148 | - | - | |
Lsi02g00230 | 388 | CDD | homeodomain | 83 | 143 | IPR001356 | GO:0003677 | |
Lsi02g00230 | 388 | PANTHER | WUSCHEL-RELATED HOMEOBOX 1-RELATED | 39 | 388 | IPR044555 | GO:0003700|GO:0099402 | |
Lsi02g00230 | 388 | Coils | Coil | 231 | 251 | - | - | |
Lsi02g00230 | 388 | MobiDBLite | consensus disorder prediction | 141 | 179 | - | - | |
Lsi02g00230 | 388 | Pfam | Homeodomain | 82 | 141 | IPR001356 | GO:0003677 | |
Lsi02g00230 | 388 | SMART | HOX_1 | 79 | 146 | IPR001356 | GO:0003677 | |
Lsi02g00230 | 388 | ProSiteProfiles | 'Homeobox' domain profile. | 87 | 142 | IPR001356 | GO:0003677 | |
Lsi02g00230 | 388 | Coils | Coil | 318 | 338 | - | - | |
Lsi02g00230 | 388 | PANTHER | WUSCHEL-RELATED HOMEOBOX 1-RELATED | 39 | 388 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Lsi02g00230 | Lsi06g01287 | CCT | |
Lsi02g00230 | Lsi06g01287 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g00606 | Lsi-Chr1:4880194 | Lsi02g00230 | Lsi-Chr2:1934707 | 6.92E-27 | dispersed | |
Lsi02g00230 | Lsi-Chr2:1934707 | Lsi10g01325 | Lsi-Chr10:17468044 | 1.40E-28 | dispersed | |
Lsi01g00272 | Lsi-Chr1:2431624 | Lsi02g00230 | Lsi-Chr2:1934707 | 1.59E-16 | transposed | |
Lsi02g01365 | Lsi-Chr2:18450158 | Lsi02g00230 | Lsi-Chr2:1934707 | 7.19E-30 | transposed | |
Lsi03g01692 | Lsi-Chr3:28214776 | Lsi02g00230 | Lsi-Chr2:1934707 | 4.62E-16 | transposed | |
Lsi04g01814 | Lsi-Chr4:25353981 | Lsi02g00230 | Lsi-Chr2:1934707 | 3.78E-14 | transposed | |
Lsi07g01059 | Lsi-Chr7:15961952 | Lsi02g00230 | Lsi-Chr2:1934707 | 1.03E-13 | transposed | |
Lsi02g00230 | Lsi-Chr2:1934707 | Lsi06g01287 | Lsi-Chr6:23429509 | 1.02E-56 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24744 | PF00046 | Homeodomain | 1.60E-19 | CL0123 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi02g00230 | - | - | csv:101209268 | 508.449 |