Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00230 ATGTGGATGATGGGTTACAATGACGCTGCAGATTTGAACTTCCCTTCCGATAACTCTTTCAATTCTCGCAAACTTAGACCTCTCATTCCTCGCCCTCTCTCTTCTTCTTCTTCCTCTTCCTCCATTAATAATCTCATCCCCACCAACGATTTCTTCTCCCAATTTCATCACATGGCGACGGTTACGGATCAAAGTAAGAGAGAGTTGAATAATGTGTCGTTGTCACCGCCTGTGGTGGTCAGTTCACGGTGGAATCCGACGCCTGAGCAGTTGAGAGTGTTGGAGGAATTGTATCGGCGAGGGACTCGAACTCCGTCCGCCGATCAAATTCAACATATCACTGCTCAGCTTCGTCGTTATGGTAAGATTGAAGGTAAGAATGTGTTCTATTGGTTTCAAAATCATAAAGCTAGAGAGCGACAGAAACGTCGTCGTCAGATGGAATCCGCCATCACTGCTGCCGACGACCACTCCACTCGCGACGGCGAAATCCTTGAAAGGAAAGATTCAGGGTCGGGCAGCACAGTGTATGAAGAACAGACCAAAAACTGGGTGCCCTCTACAAACTGCAGTACACTTCCGGAGGAATCTGTTCCAATTCAAAGGGCGGCAAAAGGTAGTGTAATAGGAGGAGCAGATTGCAGGACAGAAAATGGATGGATTCAATTTGAGGAATTGCACCAAATAAGGAATAACAACACCACCAACAACAACAATTTTGCTGAAAAGAATAGCAATAACATCAACAACAATATTAAAAATTCAGCCTCCTTGCCATTGATTCATTGTCCGACAGCCGCTCTCCGTGACGGCAGCGGCAGCCAACTAATGATGAACATTGCCCCCATCACCACCACAGCCACAGTAACAACAATAATGCACCCAAAATCTCATAGAAGAACTAATATTTCAGGTAATTTTAATATAATTGGACCCTATACTCAAAATGGGGTTGAAGAATTGGAAGAAATAGAAGAAGAATTAGAAGGAGAAGAAAGGTGTGGGGAATCTGAAACCCTACAACTTTTTCCATTGTGCAGTGACACAAGAAATGGTGAGATTATTGGAGGCAAAAATGGGTGTGAAACAGACGTGGAAAATTCAGCCATGAATAGTACTAATCTGACTCCACTTCAGTTCTTTGAATTCCTTCCATTGAAGAATTGA 1167 43.62 MWMMGYNDAADLNFPSDNSFNSRKLRPLIPRPLSSSSSSSSINNLIPTNDFFSQFHHMATVTDQSKRELNNVSLSPPVVVSSRWNPTPEQLRVLEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKRRRQMESAITAADDHSTRDGEILERKDSGSGSTVYEEQTKNWVPSTNCSTLPEESVPIQRAAKGSVIGGADCRTENGWIQFEELHQIRNNNTTNNNNFAEKNSNNINNNIKNSASLPLIHCPTAALRDGSGSQLMMNIAPITTTATVTTIMHPKSHRRTNISGNFNIIGPYTQNGVEELEEIEEELEGEERCGESETLQLFPLCSDTRNGEIIGGKNGCETDVENSAMNSTNLTPLQFFEFLPLKN 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1934707 1937954 - Lsi02G002300.1 Lsi02g00230 654972

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00230 388 MobiDBLite consensus disorder prediction 143 168 - -
Lsi02g00230 388 SUPERFAMILY Homeodomain-like 82 148 IPR009057 -
Lsi02g00230 388 Gene3D - 81 148 - -
Lsi02g00230 388 CDD homeodomain 83 143 IPR001356 GO:0003677
Lsi02g00230 388 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 39 388 IPR044555 GO:0003700|GO:0099402
Lsi02g00230 388 Coils Coil 231 251 - -
Lsi02g00230 388 MobiDBLite consensus disorder prediction 141 179 - -
Lsi02g00230 388 Pfam Homeodomain 82 141 IPR001356 GO:0003677
Lsi02g00230 388 SMART HOX_1 79 146 IPR001356 GO:0003677
Lsi02g00230 388 ProSiteProfiles 'Homeobox' domain profile. 87 142 IPR001356 GO:0003677
Lsi02g00230 388 Coils Coil 318 338 - -
Lsi02g00230 388 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 39 388 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00230 - - - csv:101209268 508.449
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi02g00230 Lsi06g01287 CCT
Lsi02g00230 Lsi06g01287 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00606 Lsi-Chr1:4880194 Lsi02g00230 Lsi-Chr2:1934707 6.92E-27 dispersed
Lsi02g00230 Lsi-Chr2:1934707 Lsi10g01325 Lsi-Chr10:17468044 1.40E-28 dispersed
Lsi01g00272 Lsi-Chr1:2431624 Lsi02g00230 Lsi-Chr2:1934707 1.59E-16 transposed
Lsi02g01365 Lsi-Chr2:18450158 Lsi02g00230 Lsi-Chr2:1934707 7.19E-30 transposed
Lsi03g01692 Lsi-Chr3:28214776 Lsi02g00230 Lsi-Chr2:1934707 4.62E-16 transposed
Lsi04g01814 Lsi-Chr4:25353981 Lsi02g00230 Lsi-Chr2:1934707 3.78E-14 transposed
Lsi07g01059 Lsi-Chr7:15961952 Lsi02g00230 Lsi-Chr2:1934707 1.03E-13 transposed
Lsi02g00230 Lsi-Chr2:1934707 Lsi06g01287 Lsi-Chr6:23429509 1.02E-56 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g212 . . . Bda15g00511 Bpe12g00698 . . . Cmo13g01029 Cmo18g00054 . Cma11g00311 . Car11g00287 Sed12g2115 Cpe20g00149 Cpe04g01371 Bhi02g00135 Tan09g1827 Cmetu02g0991 . Hepe09g0388 . . Cla06g01422 Cam06g1576 Cec06g1636 Cco06g1628 Clacu06g1538 Cmu06g1492 Cre06g2301 Cone2ag0760 . . . Lsi02g00230 Csa01g00712 Chy12g01399 Cme12g01833 Blo13g00175 . . . . . . Bma08g00054 Sed08g2754 . Cmo11g00316 Cma13g00993 Cma18g00071 Car13g00827 Car18g00062 Cpe09g01115 . Bhi08g01290 Tan05g2195 Cmetu12g1142 Lac10g0287 Hepe07g2356 . . Cla04g01050 Cam04g1093 Cec01g1608 Cco01g1654 Clacu04g1119 Cmu04g1103 Cre01g1402 Lsi06g01287 Csa01g00431 Chy02g02313 Cme02g01686
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi02g00230 CCT,ECH 1 196 Wox Gene Family AT3G18010 54.9 2.5e-47 186.4
Lsi06g01287 CCT,ECH 20 187 Wox Gene Family AT3G18010 57.8 3.1e-42 169.5
Lsi03g01692 . 25 257 Wox Gene Family AT3G03660 52.1 4.7e-47 185.3
Lsi07g01059 . 1 276 Wox Gene Family AT4G35550 51.2 8.5e-72 267.3
Lsi04g01814 . 1 189 Wox Gene Family AT4G35550 62.9 4.5e-57 218.4
Lsi08g01489 . 125 278 Wox Gene Family AT1G46480 57.7 3.6e-40 161.8
Lsi02g00230 CCT,ECH 1 196 Wox Gene Family AT3G18010 54.9 2.5e-47 186.4
Lsi06g01287 CCT,ECH 20 187 Wox Gene Family AT3G18010 57.8 3.1e-42 169.5
Lsi08g01489 . 125 278 Wox Gene Family AT1G46480 57.7 3.6e-40 161.8
Lsi03g01692 . 25 257 Wox Gene Family AT3G03660 52.1 4.7e-47 185.3
Lsi07g01059 . 1 276 Wox Gene Family AT4G35550 51.2 8.5e-72 267.3
Lsi04g01814 . 1 189 Wox Gene Family AT4G35550 62.9 4.5e-57 218.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004252 3 1 2 3 2 1 2 1 1 1 1 1 3 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24744 PF00046 Homeodomain 1.60E-19 CL0123 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00230 Lsi_Chr02 FPKM 5.166164 5.582346 6.825525 6.374884 3.16327 3.731313 4.394573 12.457173 11.672827 12.944942