Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00231 ATGCGTGAGATTCTGCACATTCAAGGAGGGCAATGTGGGAACCAAATTGGCTCGAAGTACGCCGGAAATTCAGAATTGCAGCTGGAGAGAGCGAATGTGTATTACAATGAAGCTAGTGGGGGAAGGTACGTGCCGAGGGCGGTGCTGATGGACCTCGAACCGGGAACAATGGATGCTGTTAGGACAGGGCCGTACGGGCAGATTTTCCGACCTGACAACTTCGTGTTCGGGCAATCCGGCGCAGGCAACAATTGGGCTAAAGGCCATTACACAGAAGGTGCAGAGCTTATTGATTCAGTTCTTGATGTTGTGAGGAAAGAAGCTGAGAACTGTTTTCAAGTGTGCCATTCACTTGGAGGTGGAACAGGGTCAGGAATGGGAACTCTTCTAATCTCCAAAATTAGGGAAGAATATCCAGATAGAATGATGCTCACTTTCTCAGTGTTTCCATCTCCAAAGGTGTCAGATACTGTTGTAGAACCATATAATGCTACTCTTTCAGTTCATCAATTGGTAGAGAATGCTGATGAATGTATGGTTCTTGACAATGAAGCACTCTATGACATTTGTTTTAGGACCCTCAAACTCACAACCCCAAGTTTTGGGGACTTAAACCATCTAATTTCAGCAACAATGAGTGGAGTTACCTGTTGTTTGAGATTCCCTGGCCAGCTGAATTCTGACCTCCGAAAACTGGCTGTGAACTTAATCCCTTTCCCCCGACTCCACTTCTTCATGGTCGGATTCGCGCCTCTGACCTCTCGTGGATCGCAACAGTACAGAGCACTAACTGTTCCTGAACTGACACAACAGATGTGGGATGCCAAGAACATGATGTGTGCGGCCGATCCACGTCACGGCCGATATCTTACGGCATCTGCCATGTTTCGAGGTAAAATGAGTACCAAAGAAGTCGACGAGCAGATGATGAATGTGCAGAACAAAAACTCTTCTTATTTTGTAGAATGGATACCAAACAATGTGAAATCTAGTGTTTGTGACATTCCACCTAAAGGATTCCCATTAGCTTCCACTTTTGTTGGAAACTCAACTTCAATACAAGAGATGTTTAGAAGAGTGAGTGAGCAATTCACAGCCATGTTTAGAAGGAAGGCCTTCTTACATTGGTATACTGGAGAGGGAATGGATGAAATGGAGTTTACTGAAGCAGAAAGCAACATGAATGATCTTGTTGCTGAGTATCAACAATATCAAGACGCCACAGCTGATGAAGACATTGACTATGAAGATGATGTTGGGGATGCCGAAAATTGA 1275 44.78 MREILHIQGGQCGNQIGSKYAGNSELQLERANVYYNEASGGRYVPRAVLMDLEPGTMDAVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSVCDIPPKGFPLASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADEDIDYEDDVGDAEN 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1969051 1971445 + Lsi02G002310.1 Lsi02g00231 654973

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00231 424 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 119 125 IPR017975 GO:0005525|GO:0005874|GO:0007017
Lsi02g00231 424 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 222 IPR036525 -
Lsi02g00231 424 Coils Coil 387 407 - -
Lsi02g00231 424 SMART Tubulin_C_4 225 362 IPR018316 -
Lsi02g00231 424 PRINTS Beta-tubulin signature 290 308 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lsi02g00231 424 PRINTS Beta-tubulin signature 92 110 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lsi02g00231 424 PRINTS Beta-tubulin signature 356 367 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lsi02g00231 424 PRINTS Beta-tubulin signature 391 409 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lsi02g00231 424 PRINTS Beta-tubulin signature 224 237 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lsi02g00231 424 PRINTS Beta-tubulin signature 25 42 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lsi02g00231 424 PRINTS Beta-tubulin signature 191 203 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lsi02g00231 424 PRINTS Beta-tubulin signature 72 83 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lsi02g00231 424 PRINTS Beta-tubulin signature 308 322 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lsi02g00231 424 PRINTS Beta-tubulin signature 209 218 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lsi02g00231 424 PRINTS Beta-tubulin signature 326 349 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lsi02g00231 424 PRINTS Beta-tubulin signature 244 260 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lsi02g00231 424 SMART Tubulin_4 31 223 IPR003008 GO:0005525
Lsi02g00231 424 Pfam Tubulin C-terminal domain 240 361 IPR018316 -
Lsi02g00231 424 Gene3D Tubulin/FtsZ, GTPase domain 1 241 IPR036525 -
Lsi02g00231 424 PRINTS Tubulin signature 155 168 IPR000217 GO:0005874|GO:0007017
Lsi02g00231 424 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Lsi02g00231 424 PRINTS Tubulin signature 169 189 IPR000217 GO:0005874|GO:0007017
Lsi02g00231 424 PRINTS Tubulin signature 349 377 IPR000217 GO:0005874|GO:0007017
Lsi02g00231 424 SUPERFAMILY Tubulin C-terminal domain-like 223 408 IPR008280 -
Lsi02g00231 424 Pfam Tubulin/FtsZ family, GTPase domain 3 190 IPR003008 GO:0005525
Lsi02g00231 424 PANTHER TUBULIN BETA-6 CHAIN 1 415 - -
Lsi02g00231 424 CDD beta_tubulin 2 405 - -
Lsi02g00231 424 Gene3D Helix hairpin bin 353 409 IPR023123 -
Lsi02g00231 424 Gene3D - 242 352 IPR037103 -
Lsi02g00231 424 PANTHER TUBULIN 1 415 IPR000217 GO:0005874|GO:0007017
Lsi02g00231 424 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00231 K07375 TUBB; tubulin beta - csv:101220108 827.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00231 Lsi-Chr2:1969051 Lsi08g01314 Lsi-Chr8:21511266 0 dispersed
Lsi02g00231 Lsi-Chr2:1969051 Lsi01g01519 Lsi-Chr1:13237434 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g211 . . . . Bpe12g00705 . . . Cmo13g01028 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00231 Csa01g00713 Chy12g01398 Cme12g01832 . . . . . . . . . . . . . . . . . Bhi08g01291 Tan05g2194 Cmetu12g0801 Lac10g0288 . . . Cla04g01048 Cam04g1092 Cec01g1607 Cco01g1653 Clacu04g1118 Cmu04g1102 Cre01g1401 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000127 7 8 7 13 9 7 3 7 7 7 7 7 11 7 7 12 6 15 3 7 7 7 6 8 1 6 8 9 9 2 220
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00231 Lsi_Chr02 FPKM 0.0 1.134042 11.058148 13.535443 44.56765 38.346512 46.543606 1.20962 1.410249 0.551925