Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00236 ATGGGGAGCAGCGACGACTATAAATTCATGGAGATTAGAGATGCTATTGCCTCCATAAACCAGAAGGTTAACCTTATTGGCGTTATCATCGAGTTTGGTTTCCCCAGGCGAACTAAGGGCACTGATTGCTTTTGTGCTGTAAAAATTGTTGACCAATCTCATAAAAAACCTGGAATTACTGCAAATATTTTTGCTGAAAGTTTGGAAAAGCTTCCCCATGTTGCTTCAGCAGGAGATATCATTGAACTTTCGCATGTTACGATGAAAACTCATCAGGGGGAAATATATGCTGTCTTCAATAAGAAGTTTTCTTCATTTGCTTTGTATGAAGGAAAAGATGGATCGGGCTTTCTACCATATGACGTATCACCAAAATTTCGATGCAGAGATCTTGATAAAAAGTTTATTATGAGTCTGAGGGATTGGCTGGTTGGTTTTGAACTTGATGAAGGATCAACCAACTTTTCATTTCTGAGAGATTTGAAGGAAAGCGAACATGTAAATTTGATCGGCAAGGCATGGCCCAGGTTAGCAAATGAAATTGGTTATGTACATCAATTGGGACCATTGGTTTTGCCAAGAGATATATTATGTACATTACCTCCTGTTGGCTCTATCTTGAGGTTGATCTTTGACAAAGGGATTGAGAAGCAGAGTTTATCCATGCTCAACACTGGTAAATGGATGAAATTTATGAACGTCTTATGTGAAATGCAAGTTGGATCTTTCCAAATTGTGGTGACGACATTTTCAAAGCTTCGTTATACATCGAATGAAGATATTGCCATACAATTGCACCAAAGATCATACGAGGAGCGTTTAGCATCAGTTTTGGGGAGAATTCCTTTTTGGAGCTTTCCTTCGCCTTCGCCCATTACAGAGGTTGATCACAATAATGAACCATTTGCCACATTGATGGATGTTTTGACATATTCAAAGGCCAAGGACTTCCGCTCTCCTGAAGGGACTTACCGGGTTAGGCTGTGCCTAGAAGATCCAACTGCAAGAATCCATGCCCTATTATACTCGGAAGATGGATACAAATTCTTTGGTGGCTATCTGTCAATTGATGCTTTGACGAGGAAACGAAACAAGTTACTTGGGGTTTCAGCAAGTGAGAAAAATGAGGCCAGTACAAGTAATCCTCCATGGGTGCAGTGCTGCTTAAAATCTTATTACCTTAACAAACAAGACGTATGGGGAAGTAGACAGTACAGAATATTTGGCACTCGGCTGGTAGCAGATTAA 1248 40.14 MGSSDDYKFMEIRDAIASINQKVNLIGVIIEFGFPRRTKGTDCFCAVKIVDQSHKKPGITANIFAESLEKLPHVASAGDIIELSHVTMKTHQGEIYAVFNKKFSSFALYEGKDGSGFLPYDVSPKFRCRDLDKKFIMSLRDWLVGFELDEGSTNFSFLRDLKESEHVNLIGKAWPRLANEIGYVHQLGPLVLPRDILCTLPPVGSILRLIFDKGIEKQSLSMLNTGKWMKFMNVLCEMQVGSFQIVVTTFSKLRYTSNEDIAIQLHQRSYEERLASVLGRIPFWSFPSPSPITEVDHNNEPFATLMDVLTYSKAKDFRSPEGTYRVRLCLEDPTARIHALLYSEDGYKFFGGYLSIDALTRKRNKLLGVSASEKNEASTSNPPWVQCCLKSYYLNKQDVWGSRQYRIFGTRLVAD 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2015841 2023875 + Lsi02G002360.1 Lsi02g00236 654978

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00236 415 PANTHER PROTECTION OF TELOMERES 1 190 414 IPR028389 GO:0000723|GO:0043047
Lsi02g00236 415 PANTHER PROTECTION OF TELOMERES 1 4 172 IPR028389 GO:0000723|GO:0043047
Lsi02g00236 415 SUPERFAMILY Nucleic acid-binding proteins 8 146 IPR012340 -
Lsi02g00236 415 SMART Telo_bind_a_2 9 144 IPR011564 GO:0000723|GO:0000781|GO:0003677
Lsi02g00236 415 CDD hPOT1_OB1_like 7 142 - -
Lsi02g00236 415 Pfam Telomeric single stranded DNA binding POT1/CDC13 9 143 IPR011564 GO:0000723|GO:0000781|GO:0003677
Lsi02g00236 415 Gene3D - 8 147 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00236 - - - cmo:103502471 731.48
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g195 Blo04g00855 . . . . . . . . . . . . . . Cpe20g00155 . . . . . . . . . . . . . . . Cone2ag0767 . . . Lsi02g00236 Csa01g00718 . . . . . . . Bpe15g00507 Bma03g00921 . . . . . . . . . . . . . . . . . Cla04g01043 Cam04g1088 Cec01g1601 Cco01g1649 Clacu04g1114 Cmu04g1097 Cre01g1396 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008940 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 1 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00236 Lsi_Chr02 FPKM 6.966007 7.311866 5.611801 5.607549 4.767098 5.268102 4.79872 4.155208 3.94292 4.327551