Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00238 ATGCAACTGCAAACTCGCAGACTTCAGTTAATTTTTCTAATTTTATGTCTATGTTCTCTCTTCATCAACGCCCGTCCCTTTCTCATCGTCATCTCTCAAGATGACCTCAAGGATGGTGCCCCGCCGGACGACTCCTCCGATTCCGCCAACTCCGACTCCGCCGAGTGGGATGAGTTCGGGGAACCCGAATCTCAAAACTCTGCCCTCGAGCTTGACCCCGGTTCTTGGCGCCCAATTTTTGAACCGGATTCCCCCGCTTCCGCTCCCGACGCGCCCGAGGATCTGTACTACACTGCTTTAGGGAAAATGATGTCCGCGGTCAGTTCCGGTGACCTGAGGTTGATGGAGGATGCGGTAACGGATATTGATCAAGCTGCTGCGGAGAGTGGGGATCCGCACGCGCAATCGGTGCTAGGGTTATTGTATGGAATGGGGATGATGAAGGAAACCAATAAAGCTAAGGCGTTTATGTATCACCATTTTGCCGCTGAAGGGAATAAGCAATCTAAGATGGCTCTTGCTTATATTTACTTCAGGCAAGAAATGTATGAGAAAGCAGTCAAGCTTTATGCTGAATTAGCAGAGGTAGCCATTAATAGTTTATTAGTTTCCAAGGATTCTCCAGTAATTGAACCTGTGAGAATCCATAATGGAGCTGAAGAGAACAAGCAGGCCTTGAGAAAGTCTCGAGGAGAAGAGGATGAGGACTTCCAAATTTTGGAATATCAGGCGCAGAAGGGTAATGCTGGAGCTATGTACAGAATTGGGCTATTTTACTACTTTGGACTTAGAGGGTTGAGGCGTGATCATGCAAAAGCATTGTCCTGGTTTTCCAAGGCCGTGGAGAAAGGTGAACCAAAGTCTATGGAACTACTTGGAGAGATATATGCAAGGGGGGCCGGAGTCGAAAGGGATTATACTAAAGCACTTCAATGGCTAACTCGTGCATCCAAGCAGCCGTCGTTTACTGCTTATAATGGCATGGGATATTTATACGTTAAGGGTTATGGAGTGGAGAAAAACTATACCAAGGTAAGGTTCCCATTATTTTCTGCCAAGGAGTACTTTGAGAAAGCTGCTGAAAATGACGAGTCTGGTGGTCATTATAATCTAGGAGTTATGTATCTTAAAGGCATTGGAGTAAAGAGAGATGTGAAGAAGGCATGTACTCATTTTATAATGGCTGCAAATGCTGGACAACCAAAGGCATTCTACCAGCTGGCAAAGATGTTTCATACTGGTGTTGGGCTCAAGAGGAATATTCCTATGGCTAGTGCATTATACAAATTAGTTGCTGAACGAGGGCCTTGGAGTTCATTGTCTAGATGGGCATTGGAATCATATCTGAAAAGTGATATTGGCAAGGCATTCTTCTTGTACGCAAGAATGGCGGAGCTAGGATATGAGGTGGCACAAAGCAATGCAGCATGGATACTTGACAAATATGGAGAACAAAGCATGTGTCTGGGAGAATCTGGCTTTTGCACGGATGCAGAAAGACATCAGAGAGCTCATTCTCTTTGGTGGCAAGCTTCCGAGCAAGGCAACGAACATGCTGCTTTACTGATTGGGGATGCATATTACTACGGTCGGGGAACTGACGTAGATTATGATCGTGCTGCGGAAGCATACATGCATGCCAAATCCCAACTAAATGCACAAGCTATGTTCAACCTTGGTTACATGCATGAACATGGTCTAGGCCTTCCATTTGATCTCCACCTAGCCAAACGTTACTATGACCAAGCTCTGGAACTTGATCCAGCTGCCAGGTTGCCTGTCAAGTTGGCCCTAGTTAGCCTATGGTTAAGGAAGAATCATGCCGACAGTTTTCTGGTCCATGTGATTGATTCGCTGCCAGAAGTGTATCCAAAAATTGACGCATGGGTAGAGGATGTTCTGTTGGAGGAAGGAAATGCAACAATTCTAACTTTATTTGCTTGCCTACTCACTGTCCTATATCTTAGAGAGCGACAACGGAGGCATGCCGCTGTTCGGGCTGCTGCTGCGGCGGCTGAGGCTGTGCCACTCCATCCAAATGACCATGTGCCTCCACAAAACTAA 2064 46.27 MQLQTRRLQLIFLILCLCSLFINARPFLIVISQDDLKDGAPPDDSSDSANSDSAEWDEFGEPESQNSALELDPGSWRPIFEPDSPASAPDAPEDLYYTALGKMMSAVSSGDLRLMEDAVTDIDQAAAESGDPHAQSVLGLLYGMGMMKETNKAKAFMYHHFAAEGNKQSKMALAYIYFRQEMYEKAVKLYAELAEVAINSLLVSKDSPVIEPVRIHNGAEENKQALRKSRGEEDEDFQILEYQAQKGNAGAMYRIGLFYYFGLRGLRRDHAKALSWFSKAVEKGEPKSMELLGEIYARGAGVERDYTKALQWLTRASKQPSFTAYNGMGYLYVKGYGVEKNYTKVRFPLFSAKEYFEKAAENDESGGHYNLGVMYLKGIGVKRDVKKACTHFIMAANAGQPKAFYQLAKMFHTGVGLKRNIPMASALYKLVAERGPWSSLSRWALESYLKSDIGKAFFLYARMAELGYEVAQSNAAWILDKYGEQSMCLGESGFCTDAERHQRAHSLWWQASEQGNEHAALLIGDAYYYGRGTDVDYDRAAEAYMHAKSQLNAQAMFNLGYMHEHGLGLPFDLHLAKRYYDQALELDPAARLPVKLALVSLWLRKNHADSFLVHVIDSLPEVYPKIDAWVEDVLLEEGNATILTLFACLLTVLYLRERQRRHAAVRAAAAAAEAVPLHPNDHVPPQN 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2024774 2028937 - Lsi02G002380.1 Lsi02g00238 654980

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00238 687 MobiDBLite consensus disorder prediction 38 91 - -
Lsi02g00238 687 SUPERFAMILY HCP-like 448 589 - -
Lsi02g00238 687 Gene3D Tetratricopeptide repeat domain 56 197 IPR011990 GO:0005515
Lsi02g00238 687 SUPERFAMILY HCP-like 124 195 - -
Lsi02g00238 687 SUPERFAMILY HCP-like 352 476 - -
Lsi02g00238 687 Gene3D Tetratricopeptide repeat domain 213 347 IPR011990 GO:0005515
Lsi02g00238 687 Gene3D Tetratricopeptide repeat domain 350 444 IPR011990 GO:0005515
Lsi02g00238 687 Pfam Sel1 repeat 553 587 IPR006597 -
Lsi02g00238 687 Pfam Sel1 repeat 132 165 IPR006597 -
Lsi02g00238 687 Pfam Sel1 repeat 519 541 IPR006597 -
Lsi02g00238 687 Pfam Sel1 repeat 250 284 IPR006597 -
Lsi02g00238 687 Pfam Sel1 repeat 450 468 IPR006597 -
Lsi02g00238 687 Pfam Sel1 repeat 368 399 IPR006597 -
Lsi02g00238 687 Pfam Sel1 repeat 287 320 IPR006597 -
Lsi02g00238 687 Pfam Sel1 repeat 405 435 IPR006597 -
Lsi02g00238 687 Pfam Sel1 repeat 324 363 IPR006597 -
Lsi02g00238 687 Gene3D Tetratricopeptide repeat domain 445 609 IPR011990 GO:0005515
Lsi02g00238 687 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 4 668 IPR044623 GO:0030433
Lsi02g00238 687 SMART sel1 132 167 IPR006597 -
Lsi02g00238 687 SMART sel1 286 321 IPR006597 -
Lsi02g00238 687 SMART sel1 401 436 IPR006597 -
Lsi02g00238 687 SMART sel1 322 364 IPR006597 -
Lsi02g00238 687 SMART sel1 517 552 IPR006597 -
Lsi02g00238 687 SMART sel1 249 285 IPR006597 -
Lsi02g00238 687 SMART sel1 553 588 IPR006597 -
Lsi02g00238 687 SMART sel1 365 400 IPR006597 -
Lsi02g00238 687 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 4 668 - -
Lsi02g00238 687 SUPERFAMILY HCP-like 230 344 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00238 K14026 SEL1, SEL1L; SEL1 protein - csv:101221047 1259.59
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g193 . . Bda06g00823 . . . . Bma12g01247 Cmo13g01021 Cmo18g00058 . . . . . Cpe20g00156 . . . . . . . . . . . . . . . . . . Cone19ag0338 Lsi02g00238 Csa01g00719 Chy12g01393 Cme12g01827 . Blo15g00056 . . Bpe07g01051 . . . Sed08g2761 . . Cma13g00986 Cma18g00076 Car13g00822 Car18g00067 Cpe09g01111 . Bhi08g01299 Tan05g2186 Cmetu12g0492 . Hepe07g2351 . . Cla04g01042 Cam04g1087 Cec01g1600 Cco01g1648 Clacu04g1113 Cmu04g1096 Cre01g1395 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006564 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00238 Lsi_Chr02 FPKM 3.523718 4.138825 4.794724 4.747622 3.725341 4.010371 3.505661 7.577277 7.857308 8.135255