Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00239 CCCGTATGTGCTTTTGCAGTTGCAATGCCAGTAGAGCTCAAGCTTTCTCGAACTAATCGTATCTACCGGCCTTCTGAACATCTTCAAGGCCAGATCATTGTTAATTCTCGTTCCTCGATTTCCCATAGTGGAATTCGCCTCGCTCTCAATGGATCCGTCAATTTGCAGGTTCGTGGAGGATCTGCGGGAGTTATTGAGTCAGTTTACGGTGTCATCAAGCCTATTGTGATAGTGAATAGGAGCATTGAGGTAAGACCATCTGGAAAGCTTGCTTCAGGTACAACCGAGGTAAATTAG 297 45.79 PVCAFAVAMPVELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEVN 98
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2029805 2030704 + Lsi02G002390.1 Lsi02g00239 654981

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00239 98 PANTHER VACUOLAR PROTEIN SORTING 26 RELATED 10 97 IPR028934 GO:0006886
Lsi02g00239 98 Pfam Vacuolar protein sorting-associated protein 26 17 94 IPR028934 GO:0006886
Lsi02g00239 98 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 26C 10 97 - -
Lsi02g00239 98 Gene3D - 5 98 IPR014752 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00239 K25730 VPS26C; vacuolar protein sorting-associated protein 26C - csv:101221283 156.762
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g192 . . . . . . . . Cmo13g01020 . . . . . . Cpe20g00157 . . . . . . . . . . . . . . . Cone2ag0768 . . . Lsi02g00239 Csa01g00720 Chy12g01392 Cme12g01826 . . . . . Bpe15g00506 Bma03g00922 . . . . Cma13g00985 . Car13g00821 . . . . . . . . . . Cla04g01041 Cam04g1086 Cec01g1599 Cco01g1647 Clacu04g1112 Cmu04g1095 Cre01g1394 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009617 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00239 Lsi_Chr02 FPKM 48.621372 56.541828 37.411938 36.294724 61.78199 59.69693 61.327698 26.632706 27.34585 27.683903