Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00246 ATGCAAACCCAGATGGGAACTCGTTTCCTCTCTTTGTTGCTGATGGGATTCTGTCTTCTACTTCCCACTGTCAAACCAGATCTTGCTTCTGATACAACAGCTCTTTTGGCCCTTCGTTCTGCTGTGGGTGGCCGAACTCTTATCCTCTGGAATGTCACTGATCAGAACCCCTGTTCTTGGCCTGGTATTCAATGCGAGGACAACCGTGTCACTGTTCTTCGTCTTCCCGGAGCGGCGCTGTTCGGTCAATTACCGAATGGGATTTTTGGGAACTTGACTCACCTTCGTACTCTCAGCCTTCGGCTCAATGCTCTTTCTGGTCAGCTCCCCTCAGATCTCTCTGCCTGCATTAATCTTCGCAACCTCTATTTGCAAGGTAATGAGTTTTCAGGCCTTGTCCCTGATTTCTTGTTCCAGCTTCGTGACCTTGTTCGTCTTAATTTGGCCTCTAACAACTTTTCTGGGGAGATCTCTTTCGGGTTCAACAATTTGACCCGTCTCAAGACTCTGTTCCTTGAGAAAAATCACCTCTCTGGGTCTATCCCGGACTTGAAGATCCCTCTGGATCAGTTCAACGTTTCTAACAATCAGTTAAATGGGTCGGTTCCTAAGGGATTGCAGTCGTTTTCTTCGAGTTCCTTTTTGGGGAATTCTCTTTGTGGGCGTCCTCTTGAGTCTTGCTCTGGTGATCTTGCTGTGCCGACAGGGGAGGTTGGGAACAATGGCGGCTCTGGACACAAGAAAAAATTGTCAGGGGGAGCCATTGCTGGGATTATCATTGGATCTGTACTGGGTTTTGTGTTGATACTTGTAATCTTAATGCTTTTGTGTCGAAAGAAGAGTGCTAAGAAAACGAGTTCAGTCGATGTAGCCACAGTAAAGCATCCTGAAGTGGAAATTCAGGGCGCTAAGCCAGCTGAGGAGATCGGAAATGGGGGTTACAGTAATGGTTATACTGTGCCAGCCACTGCTGCTGCTGCTTCTGCTGCAACAGTGGCGGCCGGGACTGCAAAGGGGGAAGTGAATGCCAATGGTACTGGGACTAAAAAATTGGTGTTTTTTGGCAATGCTGCAAGGGTGTTTGATTTGGAGGATCTTTTGAGGGCTTCAGCTGAAGTGTTAGGGAAAGGAACCTTTGGGACTGCTTACAAAGCAGTTTTGGAAGTGGGTTCTGTGGTGGCTGTGAAGAGGTTGAAGGATGTTACTATAACAGAGAGGGAATTCAGAGAGAAGATTGAAGCTGTTGGATCTATGGATCATGAAAATTTGGTCCCTCTCAGGGCTTACTATTTCAGTAGAGATGAGAAGCTTCTTGTCTATGATTACATGGCCATGGGAAGCTTATCTGCTCTTTTACATGGAAATAAAGGAGCTGGTAGGACTCCATTGAATTGGGAAATCAGATCTGGAATTGCCCTTGGAGCTGCTCGTGGCATTGAATATCTGCATTCTCAAGGCCCTAATGTTTCCCATGGAAACATAAAATCTTCCAATATTCTTCTAACAAAATCCTATGATGCTCGAGTCTCCGATTTCGGTTTAGCACATCTTGTTGGACCACCTTCCAGCCCCACCAGGGTTGCTGGTTACCGTGCACCAGAGGTCACCGATCCTCGTAAAGTATCCCACAAGGCTGACGTCTATAGCTTTGGTGTATTGCTTTTGGAGCTTTTGACAGGAAAGGCTCCTACCCACTCCCTTTTAAACGAGGAAGGAGTCGATCTACCCAGATGGGTGCAGTCAGTTGTTAGGGAGGAGTGGACTTCTGAAGTATTCGACCTCGAGCTTCTTAGGTACCAAAACGTCGAGGAGGAGATGGTTCAACTATTGCAGCTTGCAGTTGATTGCGCAGCTCAGTATCCTGATAAACGTCCCGCAATGTCCGAAGTCACAAAGCGTATAGAAGAACTTCGCCAATCCAGCGTTCACGAAGCTGTCAATCCACAACCCGACGCTGCTCATGATTCAGACGATGCGTCTTCTAGGTGA 1989 47.21 MQTQMGTRFLSLLLMGFCLLLPTVKPDLASDTTALLALRSAVGGRTLILWNVTDQNPCSWPGIQCEDNRVTVLRLPGAALFGQLPNGIFGNLTHLRTLSLRLNALSGQLPSDLSACINLRNLYLQGNEFSGLVPDFLFQLRDLVRLNLASNNFSGEISFGFNNLTRLKTLFLEKNHLSGSIPDLKIPLDQFNVSNNQLNGSVPKGLQSFSSSSFLGNSLCGRPLESCSGDLAVPTGEVGNNGGSGHKKKLSGGAIAGIIIGSVLGFVLILVILMLLCRKKSAKKTSSVDVATVKHPEVEIQGAKPAEEIGNGGYSNGYTVPATAAAASAATVAAGTAKGEVNANGTGTKKLVFFGNAARVFDLEDLLRASAEVLGKGTFGTAYKAVLEVGSVVAVKRLKDVTITEREFREKIEAVGSMDHENLVPLRAYYFSRDEKLLVYDYMAMGSLSALLHGNKGAGRTPLNWEIRSGIALGAARGIEYLHSQGPNVSHGNIKSSNILLTKSYDARVSDFGLAHLVGPPSSPTRVAGYRAPEVTDPRKVSHKADVYSFGVLLLELLTGKAPTHSLLNEEGVDLPRWVQSVVREEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAAQYPDKRPAMSEVTKRIEELRQSSVHEAVNPQPDAAHDSDDASSR 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2085090 2088446 - Lsi02G002460.1 Lsi02g00246 654988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00246 662 ProSiteProfiles Protein kinase domain profile. 368 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00246 662 PANTHER OS05G0588300 PROTEIN 10 657 - -
Lsi02g00246 662 SUPERFAMILY Protein kinase-like (PK-like) 372 634 IPR011009 -
Lsi02g00246 662 Gene3D Ribonuclease Inhibitor 29 186 IPR032675 -
Lsi02g00246 662 Pfam Protein kinase domain 371 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00246 662 Pfam Leucine rich repeat N-terminal domain 29 65 IPR013210 -
Lsi02g00246 662 MobiDBLite consensus disorder prediction 637 662 - -
Lsi02g00246 662 ProSitePatterns Protein kinases ATP-binding region signature. 374 396 IPR017441 GO:0005524
Lsi02g00246 662 PANTHER INACTIVE RECEPTOR KINASE-RELATED 10 657 - -
Lsi02g00246 662 Gene3D Ribonuclease Inhibitor 187 230 IPR032675 -
Lsi02g00246 662 Gene3D Transferase(Phosphotransferase) domain 1 443 659 - -
Lsi02g00246 662 CDD STKc_IRAK 374 637 - -
Lsi02g00246 662 Gene3D Phosphorylase Kinase; domain 1 335 442 - -
Lsi02g00246 662 SUPERFAMILY L domain-like 30 212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00246 Lsi-Chr2:2085090 Lsi05g00350 Lsi-Chr5:4467542 0 dispersed
Lsi02g00246 Lsi-Chr2:2085090 Lsi06g00909 Lsi-Chr6:18797364 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83343 PF00069 Pkinase 1.70E-38 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00246 - - csv:101222458 1153.66