Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00250 ATGAGCTCGCATGTCCGAAATGTGCGGAAGGATAGGTCTAAGTTACCCGCATCAAGTGCTCGACAAGAATGGGTACCGAGAGGATCCACGACAACCACTACTACCACAACTACGACTATTCATGTGGATCAGCCATTGAACGTCAATTTGAATGATAATCGGAGTGGGCTAGAGCAAAATTCTAGTCCTCCTCATCCAGTTTATCGAGACAGAGGTAATCATGGTCCAAGGGTTCATGTGGGTCCTCGAAGAAATCAGAGAAAAGACAAGGAAAAAGATAAGGAGAGAAGTGGGGATCAGGGTGAAAAGGAGGTGAGAATCTCCAACTTGCCTCAGCTAGTTCATGAAATTCAGGAAAAATTGATGAAGGGCACTGTTGAGTGCATGATTTGTTATGATATGGTTCGGAGATCTGCACCCATATGGTCTTGTTCAAGCTGCTTTTGCATTTTTCATTTAACTTGCATCAAGAAATGGGCTAGAGCACCCACTTCCACCGACTTGGTAGCTGAGAAGAATCAGGGATTAAATTGGCGTTGTCCTGGATGCCAATCTGTGCAGCTTACATCTTCGAAGGAGATTCGATATGTTTGTTTCTGTGGAAAAAGGCAGGATCCCCCTTCTGACTTGTATTTGACACCCCATTCTTGTGGGGAACCGTGTGGCAAGCCACTTGATCGAGAGATGCTGGTTGCAGGTGGAAGCAAGGAGGATCTTTGCCCCCATAATTGTGTCTTGCAGTGCCATCCGGGTCCCTGCCCTCCTTGCAAGGCATTTGCTCCTCCTTGTTTATGCCCTTGTGGCAAGAAGTTGATCACAACACGCTGTTCAGATAGGAAATCCACTTTAACTTGTGGTCAGCGTTGTGAAAAACTCCTGGATTGTGGACGTCACCGGTGTGAAAAAATCTGCCACTTGGGTACCTGTGATCCTTGTCAGGTTCTAGTTAGTGCCTCTTGCTTTTGCAAGAAAAAGAAAGAGCTTGTTCTTTGTGGAAGCATGACTTTGAAGGGTGAAGTAAATACAGAAGATGGTGTTTTCCCCTGTAGTTCCATATGCGGGAAGAGTCTTAACTGCGGCAATCATGTCTGCCGTGAAATTTGTCATCCAGGACCCTGTGGAGGTTGTGATTTAATGCCTGACATGATTAAGACGTGTTATTGTGGGAAAACACGATTGCAGGACGAAAGGACAAGTTGTTTGGACCCAATCCCAACATGCTCTGAGCTCTGTGAGAAACTATTACCTTGTGGGAAGCACCGTTGTAAGGATGTCTGTCACGCTGGAGATTGTGCACCTTGCTTGGTTCAAGTTGTGCAAAAATGCCGATGTGGATCAACTTCTCGAAATGTGGAATGCTACAAGACTTCCAGCCCAACTGACATATTCACTTGTGAAAAGCCATGCGGGTGGAAGAAGAATTGTGGAAGGCACAGGTGCAGTGAGAGATGCTGTCCTCTATCAAACTCCAGCTATAATCATTTAGGAGATTGGGATCCACACTTTTGCGTAATGAGGTGTGGGAAGAAACTAAGGTGTCGCCAGCACTCTTGTCAATCACTATGTCATAGTGGCCATTGCTCTCCATGTCCCGAGACAATCTTCACAGACTTGACATGTGCTTGTGGTAAAACTTCAATTCCTCCACCACTGCCTTGTGGAACGCCACCCCCATCATGTCAACTCCCATGTTCGGTCCCTCAGCCATGTGGCCATTGTTCTACTCATAGTTGCCACTTTGGTGACTGCCCACCCTGTACAGTTCCAATAGCCAAGGAGTGCATCGGTGGACATGTAGTTCTTAGGAACATTCCTTGCGGTTCAAGGGACATCAGATGCAACAAGCTATGTGGGAAAACTAGGCAGTGTGGGATGCATGCCTGCAACAGAACTTGTCACCCGCCGCCGTGTGACACTGCTGCTGGATCTGATTTGGGTCAGAAAACTTCCTGTGGCCAGACATGTGGTGCGCCTCGAAGAGATTGCAGGCATACATGTACTGCACCATGTCACCCGTCTGCTCCTTGCCCCGATGCAAGATGTGAATTCCCTGTTATCATCACTTGTTCATGTGGCCGAATAACAGCATCTGTTCCTTGCGATGCTGGAGGGAGTAGTATTGGTTTTAATACTGATACTCTGTATGCTTCAATTATCCAAAAATTACCTGTTCCACTTCAACCCATCGAGGTAACTGGCAAAAAGATTCCACTAGGACAAAGAAAACTGACATGTGATGATGAATGCTCTAAGCTGGAGAGGAATCGGGTTCTTGCAGATGCTTTTGATATCAATCCCCCAAATTTGGATGCCCTTCACTTCGGGGATAGTTCTGCTTCTGAATTGCTTGCAGACCTCTTTAGACGTGATTCAAAATGGGTATTGGCCTTGGAGGAGAGATGCAAATTCTTGGTCCTTGGAAAGAATAGAGGAACAATGAGTGGCCTTAAAGTTCATGTTTTCTGTCCAATGCCCAAGGATAAGAGAGATGCTGTCAGGCTGATTGCTGAGAGGTGGAAGCTTGCGATCAATTCTGTTGGCTGGGAGCCCAAACGTTTCATTACTATTCATGTTACTCCTAAATCAAAAGTTCCATCTCGGGTGCTTGGTATTAAGGGCTCAACTACCACGAGTACTCTACATCCACCAGCTTATGATCCTTTAGTAGATATGGATCCTAGGCTAGTTGTTTCTTTTCCAGATTTGCCTAGGGAATCAGACATTAGTGCATTAGTCTTGAGGTTTGGTGGGGAATGTGAATTAGTATGGTTGAACGACAAGAATGCTTTGGCTGTCTTCAGTGATCCTGCTCGAGCAGCTACTGCAATGAGAAGGTTGGATCATGGGACAGCGTATCATGGAGCCAGTGCTCTTCAAAATGGTGGTGCATCAGCATCATCCAATTCAAATGCTTGGGGAGGAGGGGAGAATGCAAAGGAAGGTGGAGCAGCAAAGAGTAGTAATCCATGGAAAAGGGCCGTAGTTCAGGATTCTAGTTGGAAGGACACTTCATGGGGCAATGAAGAATGGTCCGGTCCATCTATCGACGTCCAAGCATCCGTATGGAAAAGAGAAGCTCCACTTTCTACTTCACTTAATCGGTGGCACACATTAGACACTGAATCTGCTCTGAGTTCTTCCACTCAATCTCCCGAACACAATCTTGGCAATCTGGTAGGCCATTCCTCTTTAGGATCTGAATCAGGTACAAGTAGGAGCTTGAGCTCTGGAGGAGGAATGCAGGTTGTAACAGATGATGGAACAAACATGTCGGAAGTGGCAGACGATTGGGAGAAAGCTTACGACTGA 3309 46.33 MSSHVRNVRKDRSKLPASSARQEWVPRGSTTTTTTTTTTIHVDQPLNVNLNDNRSGLEQNSSPPHPVYRDRGNHGPRVHVGPRRNQRKDKEKDKERSGDQGEKEVRISNLPQLVHEIQEKLMKGTVECMICYDMVRRSAPIWSCSSCFCIFHLTCIKKWARAPTSTDLVAEKNQGLNWRCPGCQSVQLTSSKEIRYVCFCGKRQDPPSDLYLTPHSCGEPCGKPLDREMLVAGGSKEDLCPHNCVLQCHPGPCPPCKAFAPPCLCPCGKKLITTRCSDRKSTLTCGQRCEKLLDCGRHRCEKICHLGTCDPCQVLVSASCFCKKKKELVLCGSMTLKGEVNTEDGVFPCSSICGKSLNCGNHVCREICHPGPCGGCDLMPDMIKTCYCGKTRLQDERTSCLDPIPTCSELCEKLLPCGKHRCKDVCHAGDCAPCLVQVVQKCRCGSTSRNVECYKTSSPTDIFTCEKPCGWKKNCGRHRCSERCCPLSNSSYNHLGDWDPHFCVMRCGKKLRCRQHSCQSLCHSGHCSPCPETIFTDLTCACGKTSIPPPLPCGTPPPSCQLPCSVPQPCGHCSTHSCHFGDCPPCTVPIAKECIGGHVVLRNIPCGSRDIRCNKLCGKTRQCGMHACNRTCHPPPCDTAAGSDLGQKTSCGQTCGAPRRDCRHTCTAPCHPSAPCPDARCEFPVIITCSCGRITASVPCDAGGSSIGFNTDTLYASIIQKLPVPLQPIEVTGKKIPLGQRKLTCDDECSKLERNRVLADAFDINPPNLDALHFGDSSASELLADLFRRDSKWVLALEERCKFLVLGKNRGTMSGLKVHVFCPMPKDKRDAVRLIAERWKLAINSVGWEPKRFITIHVTPKSKVPSRVLGIKGSTTTSTLHPPAYDPLVDMDPRLVVSFPDLPRESDISALVLRFGGECELVWLNDKNALAVFSDPARAATAMRRLDHGTAYHGASALQNGGASASSNSNAWGGGENAKEGGAAKSSNPWKRAVVQDSSWKDTSWGNEEWSGPSIDVQASVWKREAPLSTSLNRWHTLDTESALSSSTQSPEHNLGNLVGHSSLGSESGTSRSLSSGGGMQVVTDDGTNMSEVADDWEKAYD 1102
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2121759 2127682 + Lsi02G002500.1 Lsi02g00250 654992

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00250 1102 MobiDBLite consensus disorder prediction 1042 1088 - -
Lsi02g00250 1102 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 21 1050 IPR034078 GO:0003700
Lsi02g00250 1102 SUPERFAMILY RING/U-box 117 187 - -
Lsi02g00250 1102 MobiDBLite consensus disorder prediction 1 107 - -
Lsi02g00250 1102 MobiDBLite consensus disorder prediction 1042 1102 - -
Lsi02g00250 1102 CDD NF-X1-zinc-finger 507 546 - -
Lsi02g00250 1102 ProSiteProfiles Zinc finger PHD-type profile. 125 186 IPR019787 -
Lsi02g00250 1102 CDD NF-X1-zinc-finger 651 700 - -
Lsi02g00250 1102 CDD NF-X1-zinc-finger 407 455 - -
Lsi02g00250 1102 SMART znfxneu3 359 378 IPR000967 GO:0005634|GO:0008270
Lsi02g00250 1102 SMART znfxneu3 570 588 IPR000967 GO:0005634|GO:0008270
Lsi02g00250 1102 SMART znfxneu3 417 436 IPR000967 GO:0005634|GO:0008270
Lsi02g00250 1102 SMART znfxneu3 662 683 IPR000967 GO:0005634|GO:0008270
Lsi02g00250 1102 SMART znfxneu3 295 314 IPR000967 GO:0005634|GO:0008270
Lsi02g00250 1102 SMART znfxneu3 240 258 IPR000967 GO:0005634|GO:0008270
Lsi02g00250 1102 SMART znfxneu3 513 532 IPR000967 GO:0005634|GO:0008270
Lsi02g00250 1102 SMART znfxneu3 623 653 IPR000967 GO:0005634|GO:0008270
Lsi02g00250 1102 MobiDBLite consensus disorder prediction 23 62 - -
Lsi02g00250 1102 MobiDBLite consensus disorder prediction 959 1012 - -
Lsi02g00250 1102 MobiDBLite consensus disorder prediction 1 17 - -
Lsi02g00250 1102 CDD RING-CH-C4HC3_NFX1 127 184 - -
Lsi02g00250 1102 MobiDBLite consensus disorder prediction 959 974 - -
Lsi02g00250 1102 Coils Coil 1094 1102 - -
Lsi02g00250 1102 Pfam NF-X1 type zinc finger 242 257 IPR000967 GO:0005634|GO:0008270
Lsi02g00250 1102 Pfam NF-X1 type zinc finger 623 638 IPR000967 GO:0005634|GO:0008270
Lsi02g00250 1102 Pfam NF-X1 type zinc finger 359 376 IPR000967 GO:0005634|GO:0008270
Lsi02g00250 1102 Pfam NF-X1 type zinc finger 578 587 IPR000967 GO:0005634|GO:0008270
Lsi02g00250 1102 Pfam NF-X1 type zinc finger 295 313 IPR000967 GO:0005634|GO:0008270
Lsi02g00250 1102 Pfam NF-X1 type zinc finger 417 434 IPR000967 GO:0005634|GO:0008270
Lsi02g00250 1102 Pfam NF-X1 type zinc finger 475 486 IPR000967 GO:0005634|GO:0008270
Lsi02g00250 1102 Pfam NF-X1 type zinc finger 507 531 IPR000967 GO:0005634|GO:0008270
Lsi02g00250 1102 Pfam NF-X1 type zinc finger 655 680 IPR000967 GO:0005634|GO:0008270
Lsi02g00250 1102 ProSiteProfiles Zinc finger RING-type profile. 128 184 IPR001841 -
Lsi02g00250 1102 CDD NF-X1-zinc-finger 217 278 - -
Lsi02g00250 1102 MobiDBLite consensus disorder prediction 991 1012 - -
Lsi02g00250 1102 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 21 1050 - -
Lsi02g00250 1102 CDD NF-X1-zinc-finger 285 333 - -
Lsi02g00250 1102 MobiDBLite consensus disorder prediction 70 103 - -
Lsi02g00250 1102 CDD NF-X1-zinc-finger 349 392 - -
Lsi02g00250 1102 CDD NF-X1-zinc-finger 560 608 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00250 K12236 NFX1; transcriptional repressor NF-X1 - csv:101210254 2155.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00250 Lsi-Chr2:2121759 Lsi03g00305 Lsi-Chr3:3714338 5.43E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g162 Blo04g00860 . . . . . Bma06g00071 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00250 . . . . . . . . . Bma03g00927 . . . . . . . . . . Bhi08g01330 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011037 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24746 PF01422 zf-NF-X1 1.10E+02 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00250 Lsi_Chr02 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0