Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00252 ATGGCTATCGTCCGTGATCGCCGCCACTTAAACCTCCGCCTTCCCGACCTCTCCGACTGCCGTCCCCGCTTCCCTCTCCCCCTTCCTCCCTCCTCTGCCCCCGCCCCTCCCGCCGCCCCCTCCGCCATCTCCTCCTCCGACCTCGACAAGCTCCAAGTCCTCGGCCACGGCAACGGCGGCACCGTCTACAAAGTCCGCCACAAACGCACCTCCACCACTTACGCTCTCAAAGTCGTCCATGGCGACTGCGATCCCACCGTCCGTCGCCAAGTTTTCAGAGAGATGGAAATTCTCCGCCGTACTGATTCTCCCTATGTCGTTCAGTGCCATGGAATCTTCGAGAAGCCTTCTGGAGATGTAACGATTTTGATGGAGTATATGGATCTAGGATCGCTTGATTCGCTCTTGAAAAAGAATTCGACGTTGTCAGAAGCGACGCTCGCTCACGTATCGCGTCAAGTTCTTAACGGACTTCATTATCTTCATTCTCACAAAATCATTCATCGCGATATTAAACCGTCGAATCTGTTGGTGAATAAGAATATGGAGGTTAAGATTGCCGATTTTGGAGTTAGTAAAATTATGTGCAGGACTTTGGATGCTTGCAATTCCTACGTCGGAACTTGCGCTTATATGAGTCCGGAGCGGTTCGATCCAGAGACTTACGGCGGAAATTACAACGGTTACGCCGGCGATATTTGGAGTTTGGGGCTTACTCTTCTGGAACTTTATTTAGGTCATTTTCCTTTTCTTCCGCCTGGACAGAGACCGGATTGGGCGACTCTGATGTGTGCGATTTGCTTCGGTGAACCACCGACGCTGCCGGAGAATGCGTCGGAGGAGTTTCGGAGCTTTGTTGAGTGTTGCTTGCAGAAGGAATCGAGCAAGAGGTGGACGGCGGCGCAATTGTTAACGCATCCGTTTGTATGCAGGGAATCATCAAGGTCCGACCGATGA 957 52.35 MAIVRDRRHLNLRLPDLSDCRPRFPLPLPPSSAPAPPAAPSAISSSDLDKLQVLGHGNGGTVYKVRHKRTSTTYALKVVHGDCDPTVRRQVFREMEILRRTDSPYVVQCHGIFEKPSGDVTILMEYMDLGSLDSLLKKNSTLSEATLAHVSRQVLNGLHYLHSHKIIHRDIKPSNLLVNKNMEVKIADFGVSKIMCRTLDACNSYVGTCAYMSPERFDPETYGGNYNGYAGDIWSLGLTLLELYLGHFPFLPPGQRPDWATLMCAICFGEPPTLPENASEEFRSFVECCLQKESSKRWTAAQLLTHPFVCRESSRSDR 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2139037 2139993 - Lsi02G002520.1 Lsi02g00252 654994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00252 318 MobiDBLite consensus disorder prediction 23 37 - -
Lsi02g00252 318 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 5 313 - -
Lsi02g00252 318 ProSitePatterns Protein kinases ATP-binding region signature. 54 77 IPR017441 GO:0005524
Lsi02g00252 318 ProSiteProfiles Protein kinase domain profile. 48 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00252 318 Gene3D Transferase(Phosphotransferase) domain 1 130 318 - -
Lsi02g00252 318 MobiDBLite consensus disorder prediction 23 43 - -
Lsi02g00252 318 CDD PKc_MAPKK_plant_like 47 309 - -
Lsi02g00252 318 PANTHER SERINE/THREONINE-PROTEIN KINASE C01C4.3-RELATED 5 313 - -
Lsi02g00252 318 SUPERFAMILY Protein kinase-like (PK-like) 47 310 IPR011009 -
Lsi02g00252 318 SMART serkin_6 48 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00252 318 Pfam Protein kinase domain 50 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00252 318 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Lsi02g00252 318 Gene3D Phosphorylase Kinase; domain 1 37 128 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00252 Lsi-Chr2:2139037 Lsi07g00631 Lsi-Chr7:6766995 2.84E-110 dispersed
Lsi02g00252 Lsi-Chr2:2139037 Lsi06g00302 Lsi-Chr6:3461235 4.38E-75 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83344 PF00069 Pkinase 1.20E-65 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00252 K20604 - csv:101203133 601.668