Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00252 ATGGCTATCGTCCGTGATCGCCGCCACTTAAACCTCCGCCTTCCCGACCTCTCCGACTGCCGTCCCCGCTTCCCTCTCCCCCTTCCTCCCTCCTCTGCCCCCGCCCCTCCCGCCGCCCCCTCCGCCATCTCCTCCTCCGACCTCGACAAGCTCCAAGTCCTCGGCCACGGCAACGGCGGCACCGTCTACAAAGTCCGCCACAAACGCACCTCCACCACTTACGCTCTCAAAGTCGTCCATGGCGACTGCGATCCCACCGTCCGTCGCCAAGTTTTCAGAGAGATGGAAATTCTCCGCCGTACTGATTCTCCCTATGTCGTTCAGTGCCATGGAATCTTCGAGAAGCCTTCTGGAGATGTAACGATTTTGATGGAGTATATGGATCTAGGATCGCTTGATTCGCTCTTGAAAAAGAATTCGACGTTGTCAGAAGCGACGCTCGCTCACGTATCGCGTCAAGTTCTTAACGGACTTCATTATCTTCATTCTCACAAAATCATTCATCGCGATATTAAACCGTCGAATCTGTTGGTGAATAAGAATATGGAGGTTAAGATTGCCGATTTTGGAGTTAGTAAAATTATGTGCAGGACTTTGGATGCTTGCAATTCCTACGTCGGAACTTGCGCTTATATGAGTCCGGAGCGGTTCGATCCAGAGACTTACGGCGGAAATTACAACGGTTACGCCGGCGATATTTGGAGTTTGGGGCTTACTCTTCTGGAACTTTATTTAGGTCATTTTCCTTTTCTTCCGCCTGGACAGAGACCGGATTGGGCGACTCTGATGTGTGCGATTTGCTTCGGTGAACCACCGACGCTGCCGGAGAATGCGTCGGAGGAGTTTCGGAGCTTTGTTGAGTGTTGCTTGCAGAAGGAATCGAGCAAGAGGTGGACGGCGGCGCAATTGTTAACGCATCCGTTTGTATGCAGGGAATCATCAAGGTCCGACCGATGA 957 52.35 MAIVRDRRHLNLRLPDLSDCRPRFPLPLPPSSAPAPPAAPSAISSSDLDKLQVLGHGNGGTVYKVRHKRTSTTYALKVVHGDCDPTVRRQVFREMEILRRTDSPYVVQCHGIFEKPSGDVTILMEYMDLGSLDSLLKKNSTLSEATLAHVSRQVLNGLHYLHSHKIIHRDIKPSNLLVNKNMEVKIADFGVSKIMCRTLDACNSYVGTCAYMSPERFDPETYGGNYNGYAGDIWSLGLTLLELYLGHFPFLPPGQRPDWATLMCAICFGEPPTLPENASEEFRSFVECCLQKESSKRWTAAQLLTHPFVCRESSRSDR 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2139037 2139993 - Lsi02G002520.1 Lsi02g00252 654994

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00252 318 MobiDBLite consensus disorder prediction 23 37 - -
Lsi02g00252 318 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 5 313 - -
Lsi02g00252 318 ProSitePatterns Protein kinases ATP-binding region signature. 54 77 IPR017441 GO:0005524
Lsi02g00252 318 ProSiteProfiles Protein kinase domain profile. 48 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00252 318 Gene3D Transferase(Phosphotransferase) domain 1 130 318 - -
Lsi02g00252 318 MobiDBLite consensus disorder prediction 23 43 - -
Lsi02g00252 318 CDD PKc_MAPKK_plant_like 47 309 - -
Lsi02g00252 318 PANTHER SERINE/THREONINE-PROTEIN KINASE C01C4.3-RELATED 5 313 - -
Lsi02g00252 318 SUPERFAMILY Protein kinase-like (PK-like) 47 310 IPR011009 -
Lsi02g00252 318 SMART serkin_6 48 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00252 318 Pfam Protein kinase domain 50 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00252 318 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Lsi02g00252 318 Gene3D Phosphorylase Kinase; domain 1 37 128 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00252 K20604 MKK9; mitogen-activated protein kinase kinase 9 [EC:2.7.12.2] - csv:101203133 601.668
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00252 Lsi-Chr2:2139037 Lsi07g00631 Lsi-Chr7:6766995 2.84E-110 dispersed
Lsi02g00252 Lsi-Chr2:2139037 Lsi06g00302 Lsi-Chr6:3461235 4.38E-75 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi06g00302 CCT 28 353 MAP Kinase Kinase Gene Family AT4G26070 70.8 1.6e-136 482.6
Lsi11g00177 CCT 27 410 MAP Kinase Kinase Gene Family AT4G26070 56.2 1.6e-115 412.9
Lsi11g00218 . 26 332 MAP Kinase Kinase Gene Family AT4G26070 52.9 3.9e-98 355.1
Lsi06g00302 CCT 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.3 2.2e-133 472.2
Lsi11g00177 CCT 1 308 MAP Kinase Kinase Gene Family AT4G29810 63.3 3.4e-110 395.2
Lsi11g00218 . 10 312 MAP Kinase Kinase Gene Family AT4G29810 59.4 6.2e-104 374.4
Lsi03g01358 . 36 486 MAP Kinase Kinase Gene Family AT5G40440 73.9 5.8e-207 717.2
Lsi07g00631 . 1 368 MAP Kinase Kinase Gene Family AT1G51660 70.8 8.7e-128 453.8
Lsi07g00631 . 1 368 MAP Kinase Kinase Gene Family AT3G21220 69.6 4.0e-130 461.5
Lsi02g00252 . 41 311 MAP Kinase Kinase Gene Family AT3G21220 54.6 2.5e-84 309.3
Lsi11g00218 . 1 335 MAP Kinase Kinase Gene Family AT5G56580 79.7 2.4e-159 558.5
Lsi08g00359 . 5 335 MAP Kinase Kinase Gene Family AT5G56580 64.6 1.9e-119 426.0
Lsi06g00302 CCT 7 352 MAP Kinase Kinase Gene Family AT5G56580 59.4 2.5e-119 425.6
Lsi02g00252 . 1 313 MAP Kinase Kinase Gene Family AT1G18350 63.3 9.9e-109 390.2
Lsi07g00631 . 77 336 MAP Kinase Kinase Gene Family AT1G18350 52.8 2.9e-76 282.3
Lsi02g00252 . 1 297 MAP Kinase Kinase Gene Family AT3G06230 52.6 9.8e-82 300.4
Lsi02g00252 . 1 309 MAP Kinase Kinase Gene Family AT1G73500 67.1 1.2e-114 409.8
Lsi07g00631 . 77 336 MAP Kinase Kinase Gene Family AT1G73500 52.5 4.5e-77 285.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011011 1 1 0 0 0 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83344 PF00069 Pkinase 1.20E-65 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00252 Lsi_Chr02 FPKM 20.972906 25.60685 59.779942 57.950691 12.579427 12.253574 10.96533 55.577278 59.120377 56.173931