Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00257 ATGCTGGCTGATCTCTCTTCTCCTTCACTTCCTTGTTTCGAGCCTTTGTCTAATTGCTTTGAAAACAATGGAACCAATAACAAAAGAAAAAGAAGACCTGCTGGAACTCCAGACCCAGATGCAGAGGTGGTTTCTCTCTCTCCAAAAACTCTATTGGAATCAGATCGTTACGTATGTGAGATCTGTAATCAAGGGTTTCAGAGAGATCAGAATCTACAGATGCATCGACGTCGGCACAAGGTGCCGTGGAAGTTGTTGAAAAGAACGGAGGCGACGGCCGTAGTGAGAAAACGAGTGTTCGTTTGCCCGGAACCGAGCTGCTTACACCATAACCCTACTCATGCTTTGGGAGATTTGGTAGGAATAAAGAAGCACTTTAGAAGAAAACATAGTAACCATAAGCAATGGGTTTGTGAAAAATGCTCTAAAGGATATGCTGTTCAATCTGATTACAAAGCTCATCTCAAAACCTGTGGAACTAGAGGCCATTCTTGTGATTGTGGTCGAGTTTTCTCCAGGGTTGAGAGTTTCATAGAACATCAAGATAGTTGCAAATTGGGTCATCATCATCATCAACAATCAGAACAAAAAATTCCATGTTTATCTAGAACAGCTTCAAGTCCAACTCCAAGCCCTTCTTCAGATACAAATTTCAGCTTCTTAAACCAAAACCAAAACCAAACATTTAGTACTACAATTGATCATCATCATCATCATCATGGAGCTGAAACATATTCAACAAAAACAGCGATAATTCCCCAAAGAATTATTAGCCATAATCATCATCAAAATTTAGACCTTCAACTTTCCACAAATTCAACTTCCATTCATGTTTCAGTTTCTCCAAAAAGACATGAAAATTACTCAACCCATTTGCAACTTTCTATTGGTTCTTGCAATTATGGTGAGAAAAATGATCATGATAATCATAGCAATAATAATGATAATAATGATGATGATGATGAGAAATTGGGTTTTTTGAGGCTGAAAGAGGAAGCTAAAGAGCAAATGAGAGTGGCAATGGAAGAGAAAGCTTTGGCTGAAGAAGCAAGAAATGAAGCTAAGAAGCAAATTGAAATGGCTGAAAAGGAATTGATAAATGCCAAGAGAATGAGACAACAAGCTCAAGCTGAATTACAAAGAGCTCTTGCTTTGAAAGAACATGCCATCAAGAAAATCAACTCCACCATTCTCCAAATCACTTGCCAAGTTTGTAGGCAACAGTTTCATCCTTTGCCTAAAATTTGA 1248 38.3 MLADLSSPSLPCFEPLSNCFENNGTNNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRTEATAVVRKRVFVCPEPSCLHHNPTHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDSCKLGHHHHQQSEQKIPCLSRTASSPTPSPSSDTNFSFLNQNQNQTFSTTIDHHHHHHGAETYSTKTAIIPQRIISHNHHQNLDLQLSTNSTSIHVSVSPKRHENYSTHLQLSIGSCNYGEKNDHDNHSNNNDNNDDDDEKLGFLRLKEEAKEQMRVAMEEKALAEEARNEAKKQIEMAEKELINAKRMRQQAQAELQRALALKEHAIKKINSTILQITCQVCRQQFHPLPKI 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2194024 2196861 - Lsi02G002570.1 Lsi02g00257 654999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00257 415 MobiDBLite consensus disorder prediction 23 43 - -
Lsi02g00257 415 Gene3D Classic Zinc Finger 35 100 - -
Lsi02g00257 415 MobiDBLite consensus disorder prediction 303 322 - -
Lsi02g00257 415 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Lsi02g00257 415 PANTHER OS03G0310200 PROTEIN 14 410 IPR039288 GO:0009630
Lsi02g00257 415 Coils Coil 330 392 - -
Lsi02g00257 415 SMART c2h2final6 100 130 IPR013087 -
Lsi02g00257 415 SMART c2h2final6 136 163 IPR013087 -
Lsi02g00257 415 SMART c2h2final6 57 79 IPR013087 -
Lsi02g00257 415 MobiDBLite consensus disorder prediction 195 221 - -
Lsi02g00257 415 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 14 410 - -
Lsi02g00257 415 SUPERFAMILY beta-beta-alpha zinc fingers 56 156 IPR036236 -
Lsi02g00257 415 MobiDBLite consensus disorder prediction 197 221 - -
Lsi02g00257 415 MobiDBLite consensus disorder prediction 299 322 - -
Lsi02g00257 415 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00015 Lsi-Chr2:219800 Lsi02g00257 Lsi-Chr2:2194024 1.09E-171 dispersed
Lsi02g00257 Lsi-Chr2:2194024 Lsi09g00719 Lsi-Chr9:8267896 1.73E-138 dispersed
Lsi02g00257 Lsi-Chr2:2194024 Lsi08g01410 Lsi-Chr8:22345397 1.38E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24748 None None None None Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00257 K25871 - csv:101210748 746.888