Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00262 ATGCATTTCTTTTGCCGAGGGTTCTACTGTGGCGTATTTTCATTTTCTAGCTCTGGAGCCATGGATCATACAAAGCTCCAGAAGATGGCTGGTGCAGTTCGCACTGGTGGAAAAGGTAGCGTGAGAAGGAAGAAGAAGGCTGTTCACAAGACAACTACCACAGACGATAAAAGGCTTCAAAGTACCTTGAAGAGAATAGGAGTTAATGCAATTCCTGCAATTGAGGAAGTCAACATTTTCAAGGATGATGTAGTTATTCAATTTACTAACCCGAAAGTTCAGGCTTCTATTGCGGCAAACACATGGGTTGTTAGTGGTTCTCCTCAAACAAAAAAATTGCAGGATATTCTGCCTGGAATTATCAACCAACTGGGGCCTGATAACTTGGACAATCTGAGGAAGTTGGCTGAGCAGTTCCAGAAGCAAGCACCTGGAGCAGGTGCTGGTGCTGGTGCAGCAGCAGCAGCCAATGCTGAGGATGACGATGATGATGTTCCCGACCTCGTCGAAGGGCAGACCTTCGAAGCTGCTGCGGAAGAGAGTCAAGCCTCCTAG 555 46.85 MHFFCRGFYCGVFSFSSSGAMDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPGAGAGAGAAAAANAEDDDDDVPDLVEGQTFEAAAEESQAS 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2248508 2251978 + Lsi02G002620.1 Lsi02g00262 655004

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00262 184 Gene3D - 68 124 IPR038187 -
Lsi02g00262 184 ProSiteProfiles NAC A/B domain profile. 53 117 IPR002715 -
Lsi02g00262 184 PANTHER TRANSCRIPTION FACTOR BTF3 FAMILY MEMBER 17 184 IPR039370 -
Lsi02g00262 184 MobiDBLite consensus disorder prediction 142 184 - -
Lsi02g00262 184 SMART NAC_2 56 111 IPR002715 -
Lsi02g00262 184 PANTHER NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT BETA 17 184 - -
Lsi02g00262 184 Pfam NAC domain 56 111 IPR002715 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00262 K01527 EGD1, BTF3; nascent polypeptide-associated complex subunit beta - csv:101204598 277.715
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00038 Lsi-Chr2:388367 Lsi02g00262 Lsi-Chr2:2248508 1.25E-73 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g977 . . Bda06g00836 . . . . Bma12g01254 Cmo13g01002 Cmo18g00069 . . . . . Cpe20g00045 . . . . . . . . . . . . . . . . . . . Lsi02g00262 Csa01g00514 Chy12g01570 Cme12g02028 . Blo15g00047 . . Bpe07g01061 . . . . . . Cma13g01108 Cma18g00092 Car13g00801 Car18g00082 Cpe09g01098 . Bhi08g01334 Tan05g2153 . Lac10g0316 Hepe07g2327 . . Cla01g01469 . Cec01g1577 Cco01g1625 . . Cre01g1374 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002043 5 3 3 2 3 1 4 2 1 1 1 1 4 2 2 3 1 3 4 1 1 2 2 2 2 2 1 4 2 1 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00262 Lsi_Chr02 FPKM 8.221344 7.90546 17.79141 18.232185 31.022102 26.78171 27.237152 1.41123 1.632649 2.104005