Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00263 ATGCTTATTCTGGAAGGCCTTCTCAAGCTTCCGGAAAACAGGGAATGTGCTGACTGCCGGTGCAAGGCTCCACGGTGGGCAAGTGTAAACCTTGGAATTTTTATATGTATGCAATGCTCGGGTATTCATCGGAGTCTTGGAGTACATATTTCAAAGGTACGGTCTACTACTCTTGATACATGGCTACCGGAACAGGTTGCTTTTATGCAGTCTATGGGAAATGAGAGATCGAATTGTTACTGGGAAGCAGAACTTCCACCAAATTTTGATAGGAGAGGGCAAATGTTCATTCGTGCCAAGTACGAAGAGAAAAGGTGGGTTTCTAAGAACAGAACATGCCCAGCTCCACAAATAGGTGGAATGAGAAGTATTTATTGTGATTCGATTGAAACTGGACCCAAATGCTCCATTTCAAAGAAGATGAGGAACTTTTCCCTTGAGGAAGAGATTCTCACAAAGCACGTGTCAAAATCAACTCCCACAGTAGTAAAAGCACGCGGGAATTCTTTAGATATGAAGAACCATATGATTGCTTCAGCTCCTCCAAAAGGCCCTACATTTGTGAAAGAAACTGATCCATCAACAAAAAGTACAAATGGATCCCCAGATCTCTTCAAATATGTCCAAGATGCAAAACAGGACTGCTCTAGTCTTCTTCAAGGCACCTGCTTCATGCGAGTTTTCGTTCATTCTTCTTTCACGTCCTTCAAAAACACTCTTTGTGGACACAGCCTCCTTATTGTTGACTTGGGCCCACATTCGATCCCCAGAGCAGCTTCGAAGGTCTGCCCTTCGACGAGGTCGGGAACATCATCATCGTCATCCTCAGCATTGGCTGCTGCTGCTGCACCAGCACCAGCACCTGCTCCAGGTGCTTGCTTCTGGAACTGCTCAGCCAACTTCCTCAGATTGTCCAAGTTATCAGGCCCTAAAAATTTACACGCAAACAAGTCGTATATTATTAGCACCGCAGAATATCCTGCAATTCTGAGAGAAGAAAGAAAAATATTAGAGCGGCATAGAATTGCATTAACTCCTATTCTCTTCAAGTGCGAACTGCACCAGCCATCTTCTGGAGCTTTGTATGATCCATCTGCACAACATAGGAACAAGGATAAGATTTATGAGGAAAATAGAAGGATAATATTTATGAGAATTGAAAACTTGAAAAGTGATCAAGGACTTGACTCGGACTTGTATTATTAG 1206 43.2 MLILEGLLKLPENRECADCRCKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVAFMQSMGNERSNCYWEAELPPNFDRRGQMFIRAKYEEKRWVSKNRTCPAPQIGGMRSIYCDSIETGPKCSISKKMRNFSLEEEILTKHVSKSTPTVVKARGNSLDMKNHMIASAPPKGPTFVKETDPSTKSTNGSPDLFKYVQDAKQDCSSLLQGTCFMRVFVHSSFTSFKNTLCGHSLLIVDLGPHSIPRAASKVCPSTRSGTSSSSSSALAAAAAPAPAPAPGACFWNCSANFLRLSKLSGPKNLHANKSYIISTAEYPAILREERKILERHRIALTPILFKCELHQPSSGALYDPSAQHRNKDKIYEENRRIIFMRIENLKSDQGLDSDLYY 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2249148 2258516 - Lsi02G002630.1 Lsi02g00263 655005

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00263 401 Pfam Putative GTPase activating protein for Arf 4 109 IPR001164 GO:0005096
Lsi02g00263 401 PRINTS HIV Rev interacting protein signature 32 49 IPR001164 GO:0005096
Lsi02g00263 401 PRINTS HIV Rev interacting protein signature 13 32 IPR001164 GO:0005096
Lsi02g00263 401 PRINTS HIV Rev interacting protein signature 53 74 IPR001164 GO:0005096
Lsi02g00263 401 SMART arf_gap_3 5 114 IPR001164 GO:0005096
Lsi02g00263 401 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD15-RELATED 3 216 - -
Lsi02g00263 401 SUPERFAMILY ArfGap/RecO-like zinc finger 3 109 IPR037278 -
Lsi02g00263 401 Gene3D Arf GTPase activating protein 1 114 IPR038508 -
Lsi02g00263 401 CDD ArfGap 4 101 - -
Lsi02g00263 401 ProSiteProfiles ARF GTPase-activating proteins domain profile. 1 114 IPR001164 GO:0005096
Lsi02g00263 401 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 3 216 IPR044520 GO:0005096
Lsi02g00263 401 MobiDBLite consensus disorder prediction 178 201 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00263 K12486 SMAP; stromal membrane-associated protein - csv:101211239 392.119
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00263 Lsi-Chr2:2249148 Lsi04g01282 Lsi-Chr4:20241871 6.80E-34 dispersed
Lsi11g00273 Lsi-Chr11:2785781 Lsi02g00263 Lsi-Chr2:2249148 2.48E-11 dispersed
Lsi02g00263 Lsi-Chr2:2249148 Lsi02g00943 Lsi-Chr2:9334771 9.53E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g969 . . . . . . . . Cmo13g01001 Cmo18g00070 . . . . . Cpe20g00174 . . . . . . . . . . . . . . . . . . . Lsi02g00263 Csa01g00743 Chy12g01370 Cme12g01802 . . . . . . . . Sed08g2788 . . Cma13g00966 Cma18g00093 Car13g00800 Car18g00083 Cpe09g01097 . Bhi08g01335 Tan05g2152 Cmetu12g1789 Lac10g0317 Hepe07g2326 . . Cla01g01468 Cam01g1537 Cec01g1576 Cco01g1624 Clacu01g1561 Cmu01g1451 Cre01g1373 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011457 0 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 0 1 1 1 1 1 2 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00263 Lsi_Chr02 FPKM 8.515107 8.973275 10.218155 11.486434 7.996112 8.39131 9.962449 8.068317 8.545624 11.86377